ISCce1

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAVC01000008 ND Clostridium cellulolyticum
Clostridium cellulolyticum H10 ctg231
DNA section
IS Length : 1293 bp

Ends


IR Length : 14/28

IRL : TGCTAGAGAATTGACTTCACTTGACAGTATCTGAATAATGTTGGGCAATA
IRR : TGTCCTGAACGGTACTTGGGTTGACACTCCTCTGGGAAATATTAAGTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
CTAAAACAGGGTAAAAATGACCTGTGT7

DNA sequence

TGCTAGAGAATTGACTTCACTTGACAGTATCTGAATAATGTTGGGCAATATCTCCTCTGGACAATAATTAAATTGTAGGAGGAGATTTCAATTATGACAG
CACAAGATCGTATAGTTAAAAACAAAATGAGCCTGATTGAGTTGGCCGAATATCTTCAAAACGTAAGTGAAGCATGTAAAATTCATGGAGTCAGCAGACA
GCACTTCTATGATATTAAGAAAGCTTACGAGGAAAATGGTCTGGAAGGATTAAAGGACAAGACCAGAAGAAAGCCTTGTATGAAAAACAGGGTTGCTCCA
GAAACTGAGGAAGCCGTATTAAGAATAGCATATGAAAAGCCGGCATACGGGCAGCTCAGGGCAAGTAACGAACTGAGAAAACAAGGAGTTCTTGTATCAG
CCGGAGGGGTAAGATCAATCTGGCAGAGATATAATATAGAAACCTTTGACAAGAGACTCAAAAAGCTTGAAGAAAAGGCTGCCAAGGAAGGCATACTTTA
CACTGAAGATCAGCTCGCTGCTCTGGAAAAGGCACAGCAGGAAAAGAATATATCCATAGACGAGATAGATACCCAGCACCCGGGATATTTGCTGGCACAG
GACACTTTCTATGTGGGCTATATCAAAGGTGTTGGACGTATATATCAGCAAACTGCCATAGATACTTATTCGGCAGTGGGATTCGCAAAATTATATACAG
CCAAGGTACCAGTAACAGCAGCAGATATATTAAATGACAGAGTCTTACCGTTCTTTGAGAATCATATGATACCGATAATGAGAGTACTCACAGACAGAGG
AACGGAGTACTGTGGAGCACCTGAGAAACACTTGTATGAGTTATTTCTGCAGATGAACGACATTGAGCACACAATGACAAAGGCTAAAAGCCCTCAAACA
AACGGTATATGCGAGCGTTTTAACCAAACAATTCTGAATGAATTTTATAAACCCGCATTCCGAAGGACAATGTATAAATCAGTTGAACAAATGCAGGAGG
ATTTGGATTTTTATATGCTGGAATACAACGAAGAGCGAACACATCAGGGGAAAAGGTGTAAAGGCAAGACGCCGATGCAGACATTTCTTGACAGCTTGCC
TCTTGCCCGAGAGAAGCTCCTGAATGATCCTGCGAGTTAATTTGTAGGGTCTAGCCCGCCCGGCGATGAGGGCAAAAAAGATATCAGACCAGGCGCCGGT
TTGACATAGAAAGGCACCTCCATATTGGAAGTGCCGAATAAACAAAACTTAATATTTCCCAGAGGAGTGTCAACCCAAGTACCGTTCAGGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1047 bp348 aa941140+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKAYEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVL
VSAGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDTQHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKL
YTAKVPVTAADILNDRVLPFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERFNQTILNEFYKPAFRRTMYKSVEQM
QEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDSLPLAREKLLNDPAS

 

Blast result :
Comments
ISCce1 is 76% aa similar to ISSde2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank.