ISCce1
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAVC01000008 | ND | Clostridium cellulolyticum | Clostridium cellulolyticum H10 ctg231 |
DNA section
IS Length : 1293 bp
Ends
IR Length : 14/28
IRL : TGCTAGAGAATTGACTTCACTTGACAGTATCTGAATAATGTTGGGCAATA
IRR : TGTCCTGAACGGTACTTGGGTTGACACTCCTCTGGGAAATATTAAGTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTAAAACAGG | GTAAAAA | TGACCTGTGT | 7 |
DNA sequence
TGCTAGAGAATTGACTTCACTTGACAGTATCTGAATAATGTTGGGCAATATCTCCTCTGGACAATAATTAAATTGTAGGAGGAGATTTCAATTATGACAG
CACAAGATCGTATAGTTAAAAACAAAATGAGCCTGATTGAGTTGGCCGAATATCTTCAAAACGTAAGTGAAGCATGTAAAATTCATGGAGTCAGCAGACA
GCACTTCTATGATATTAAGAAAGCTTACGAGGAAAATGGTCTGGAAGGATTAAAGGACAAGACCAGAAGAAAGCCTTGTATGAAAAACAGGGTTGCTCCA
GAAACTGAGGAAGCCGTATTAAGAATAGCATATGAAAAGCCGGCATACGGGCAGCTCAGGGCAAGTAACGAACTGAGAAAACAAGGAGTTCTTGTATCAG
CCGGAGGGGTAAGATCAATCTGGCAGAGATATAATATAGAAACCTTTGACAAGAGACTCAAAAAGCTTGAAGAAAAGGCTGCCAAGGAAGGCATACTTTA
CACTGAAGATCAGCTCGCTGCTCTGGAAAAGGCACAGCAGGAAAAGAATATATCCATAGACGAGATAGATACCCAGCACCCGGGATATTTGCTGGCACAG
GACACTTTCTATGTGGGCTATATCAAAGGTGTTGGACGTATATATCAGCAAACTGCCATAGATACTTATTCGGCAGTGGGATTCGCAAAATTATATACAG
CCAAGGTACCAGTAACAGCAGCAGATATATTAAATGACAGAGTCTTACCGTTCTTTGAGAATCATATGATACCGATAATGAGAGTACTCACAGACAGAGG
AACGGAGTACTGTGGAGCACCTGAGAAACACTTGTATGAGTTATTTCTGCAGATGAACGACATTGAGCACACAATGACAAAGGCTAAAAGCCCTCAAACA
AACGGTATATGCGAGCGTTTTAACCAAACAATTCTGAATGAATTTTATAAACCCGCATTCCGAAGGACAATGTATAAATCAGTTGAACAAATGCAGGAGG
ATTTGGATTTTTATATGCTGGAATACAACGAAGAGCGAACACATCAGGGGAAAAGGTGTAAAGGCAAGACGCCGATGCAGACATTTCTTGACAGCTTGCC
TCTTGCCCGAGAGAAGCTCCTGAATGATCCTGCGAGTTAATTTGTAGGGTCTAGCCCGCCCGGCGATGAGGGCAAAAAAGATATCAGACCAGGCGCCGGT
TTGACATAGAAAGGCACCTCCATATTGGAAGTGCCGAATAAACAAAACTTAATATTTCCCAGAGGAGTGTCAACCCAAGTACCGTTCAGGACA
CACAAGATCGTATAGTTAAAAACAAAATGAGCCTGATTGAGTTGGCCGAATATCTTCAAAACGTAAGTGAAGCATGTAAAATTCATGGAGTCAGCAGACA
GCACTTCTATGATATTAAGAAAGCTTACGAGGAAAATGGTCTGGAAGGATTAAAGGACAAGACCAGAAGAAAGCCTTGTATGAAAAACAGGGTTGCTCCA
GAAACTGAGGAAGCCGTATTAAGAATAGCATATGAAAAGCCGGCATACGGGCAGCTCAGGGCAAGTAACGAACTGAGAAAACAAGGAGTTCTTGTATCAG
CCGGAGGGGTAAGATCAATCTGGCAGAGATATAATATAGAAACCTTTGACAAGAGACTCAAAAAGCTTGAAGAAAAGGCTGCCAAGGAAGGCATACTTTA
CACTGAAGATCAGCTCGCTGCTCTGGAAAAGGCACAGCAGGAAAAGAATATATCCATAGACGAGATAGATACCCAGCACCCGGGATATTTGCTGGCACAG
GACACTTTCTATGTGGGCTATATCAAAGGTGTTGGACGTATATATCAGCAAACTGCCATAGATACTTATTCGGCAGTGGGATTCGCAAAATTATATACAG
CCAAGGTACCAGTAACAGCAGCAGATATATTAAATGACAGAGTCTTACCGTTCTTTGAGAATCATATGATACCGATAATGAGAGTACTCACAGACAGAGG
AACGGAGTACTGTGGAGCACCTGAGAAACACTTGTATGAGTTATTTCTGCAGATGAACGACATTGAGCACACAATGACAAAGGCTAAAAGCCCTCAAACA
AACGGTATATGCGAGCGTTTTAACCAAACAATTCTGAATGAATTTTATAAACCCGCATTCCGAAGGACAATGTATAAATCAGTTGAACAAATGCAGGAGG
ATTTGGATTTTTATATGCTGGAATACAACGAAGAGCGAACACATCAGGGGAAAAGGTGTAAAGGCAAGACGCCGATGCAGACATTTCTTGACAGCTTGCC
TCTTGCCCGAGAGAAGCTCCTGAATGATCCTGCGAGTTAATTTGTAGGGTCTAGCCCGCCCGGCGATGAGGGCAAAAAAGATATCAGACCAGGCGCCGGT
TTGACATAGAAAGGCACCTCCATATTGGAAGTGCCGAATAAACAAAACTTAATATTTCCCAGAGGAGTGTCAACCCAAGTACCGTTCAGGACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1047 bp | 348 aa | 94 | 1140 | + | No |
Chemistry : DDE
ORF sequence :
MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKAYEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVL
VSAGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDTQHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKL
YTAKVPVTAADILNDRVLPFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERFNQTILNEFYKPAFRRTMYKSVEQM
QEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDSLPLAREKLLNDPAS
VSAGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDTQHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKL
YTAKVPVTAADILNDRVLPFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERFNQTILNEFYKPAFRRTMYKSVEQM
QEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDSLPLAREKLLNDPAS
Blast result :
Comments
ISCce1 is 76% aa similar to ISSde2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank.