ISCausp2

  • Family IS1595
  • Group ISNha5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010338 ND Caulobacter sp.
Caulobacter sp. K31
DNA section
IS Length : 7915 bp

Ends


IR Length : 25/26

IRL : CGCCATTGTGGAGCAAACGCACCAAGTGGCCTGAGACCTAAGTTATTGTT
IRR : CGCCATTGTGGAGCAAACGCACCTAGGCACTGAATCGGGGGTCCGGGGGT

Insertion site


Left flankDirect repeatRight flankDR Length
TCGGCGAACGAGCGGCTTTCGGCGCCGTAGAGGGTG8

DNA sequence

CGCCATTGTGGAGCAAACGCACCAAGTGGCCTGAGACCTAAGTTATTGTTCTTGCTACGTTCTAAGCATGAGCAACGATGTCATTCCCTGGGATGCCGAC
CAACCCAACGTCCTGCACGCCCTTACAAGGAAGCGTGCCGAGATCGCCGGCCAGATCGAGCACAACCAACTCACCCTCCGTCATCTGATCGCCGAACTCG
ACCACGTCGATGCGACGATCCGCATCTTCAACCCGGCCGTCGATATTGGCGCGATCCGATCAAAGCCGGTTCCGCCGCGCCATGCGGCGTTCAAGGGTGA
AGTGACGCGGGTCGTCTTCAAGACGCTTCGGGAAGCGACGGCGCCGGTCACGTCTCGCGACATAGCAATACGCCTGATGAACGAGCGGGGCCTGAACCCA
GACGACAAGGAGTTGTCCGTCATCATGGTCAAACGCGTGTGCGCCTGCCTGCGAGTGCAGAAGAACAAGGGCTTGATCCGCAACGCTGAGAGCTTCGGCA
ATCTGCAAGGCTGGGAGGCTGTGCGATGACACCCTTTCGTACTGGCGCGCTCCGGTTCACCCGTGGGCGCCACGCCTACATCGTCGCGCCGGCGTATGAC
GGCGACGGCTACATCGGGCTCCGAGATGGACGGATCATAGCTAGGGCATCGGAGCGTGCGGATGTGACCCGCGCGCTGATCGTTCGGTATAACCTGTAGA
GCTTCTTGGTCGCGATCTTCGCTCCACACCGAATACTGCGGAGGCTGTGCAGTCGTCTGGGGTGCGAGCCCGGCCGCATCGGACTGGTCAGCGGCGCCCG
AATTTCTTAGAGCTTGGCCGTTATCCCTGGATTGAAATCTGCTATTCTCGCTGAGTAGTAGAGGGACGCTCCATGCCATCGACGACCGATTTCCAAGAAT
TTCTCGACAGCGAAGCCCCAGATGGCGCTCAAGAGCGCGCCGATCTGGCCGCCTGCGCCTCTGGCCCAGACGATATAGGAAGGTATTCTAGCGTAATTGC
TCCGAACGGCGCCCTGATCGTCAGCGGTGGTGGGGAGACTACGTTAGCGCTTACCTCTCCGAAGGCCAAGGCGGCGTTCTTGGCGATACTTGAAGGTGAA
GTTAGCGAGCCTGGAGCGACCCTGGAGGGCGACGCTGAATTCGAACGGTCCATGCAGAAAGACGACTAGGCGTCGCCGAAGTTCGAACAGGTGCCTAATC
GTCGAGGACGGGAATGCGATGGAAGCAGACTTCCGGTGCCTCCCATTCCTCCACTAACCCATTAGCGTTTCGCCACGCGGTAGTAATCAAGCCCATCCCA
TCGATGTCTACTACGAGCATTTTTTCACTACCGCTGTTCCAGCGGACAACGTCGCCGATGCGGATCGCAGGCTCTCGCTGATCACGGAAATCTTCAGCGC
GCTTAACGAGGCGTAAGTCGTTTTCGTTGTGTCTTTGGGTGTGAAACATCGGGGATTGTATAACCTGTGAGTGAGCCAACCTTCAAAGCCGGCGATACGG
TGCGCCTAAAGTCCGACACGGTCCTAATGACAGTGGAAAGGCTCTTCCCAACAGAAGACGACAGTTGGGAGTATGTCTGCGTATGGCGAGCAGACAACAA
GACGCTTCGAGAGCGTTATGCGGAAGTTTTACTTGAGGCGGCAAAAAGGCCGAGGCACCGATCCGTGCCTATACGCAGGGGCTAGTCGCAAGCGTCGAAA
CTGAAGCCTTATAGGAAAAGAATCCTATAAGGCTTTGGGCTTAAAGTCAAGAAACGCGTCATAGTAGGTCGCCCGCCGGCGAGTGGCGGCCATTTTTATG
CTGACGAGGGGCTATATACCTGGGCGGGTTGCTGCCTGAATCAGGTATTTTTTCACAGTATCATCTAACGCCAGCACCGTCGTGTAGCGCAGTGTCACCG
TTTCGCCCGTTCCATTGGCATACCTATCGAGTCCCCAAGACATAATTGGCTTTACTCGCCTAAGAACGTCGGCCTTCATAGCGAACGGAACAACACGGCC
GATTTCATCATCGAACACTCCTCCGTGTCCAGAGTTTACGTTAAAAGACGCAACGGAAAAGTCGCGCATTTTAACTGTATTATCAAAATAGAATCCTTCG
ACATAATGCTTGGTTACCGGAGTAAAGCTACCAATCTGGTGTGTTCCTCCGAAGATGTTCATCACCTTAGCGCCATCGCCAATTACCGAATGCGCCTGGC
GAACCGATGGTTCTGTCGCCGCAACGAGAGCCTCCAGATCACCTCCACGCGTGCGTTCAAGGTGCCGAAGCTCGGCGGTCTGGGGCTGGGGCTCGATGCC
CAAGTTTCGATCGATTGTTCTTTTGAACGTGTCGTAGAGCAGGGCCTTGCCAGCCTCAGGCGCGATCTGCACCGACGTGCCGAGCGCTGAAATTCCGTCC
AGATAGACGCGGAACTTCGAAAGAACGCTCCCCTCTTCGAGGGCAAAAGCCTTTACCGCAGACCGGCCGGTGAAATCGCCTCGCCGTCGAATTTTACCTG
TTTCAATGTAGTTGGCGACCAGGGATAGCGATAGAGAAAAGCCAGCCAGAGAAGTGTAGCCGTCATACGCGGGCATCGCGTGAAATGAGGCGTCGCCACC
ATCTAGTTCTAATTGGAAAGGAACTTCTACCAGCACCGTGGGCGCCCCATCTCAACCAAGCAAGCTTCACTGAAGCCGCTCCACGGACGACATTGCAACT
GAAATTTGCCCGTCAGACGATAACGACGGGCACGCTCTCAACTTCCTGAGATGAAAATTCCAAGCGCAGGACGAGTTTCAGCACGCGCCAATGATCACCG
GAGGTCCAGTTAATCACCCGCATTCGCGGCCCCTTGAACTCGAACTCGTGCATGTGAAGCCGCACCACATGCCTATCTTGGATGCCTTTTTCATAGGGAG
AGTCATGCGTGAACATAAGTTCGAATGCCGGAACCTCTTCTGGCCGAACGGGAAATCCTTCTCTAACCTGAGATAGCAAGCCGCACCAATGTATGAACGC
CGAGTTCAACATCGTAACTGGAAGAAATATTCTATCTTCCTGAGATGGCCCCATGTCACCGAGAAATACGGTGTCGGAACTACCAACGATCATCCTGTGC
TTTATGGTATCGTTGATACTAAATTCCACTAAGTACCCATCAGCAGCAAGATTAATTGACCTATCTGCTCCGCACATATCTCGAACGCGGTCAAAGACGT
GATCAGGTAATGGAGTTATAGACTTCCAATTTATACAGATATTTTTTGCGGCTCCCTGAGACGCGTTTCTTGCCACTATTGGGAATGGAATGCTTAGTGG
GGGCGCATTGTCTGGATATAAACTCCACGTAAAATCAATTATGTTCGAAGGAGTTTTGGGGGTGATGCGAGCCCTAGCCCCCAGAACTCTTGCTGCGCGC
ATCTCCTTTACCGTCAAGTAGGTTGCAAATGCCGCGCCCAGCGATCCGAGCGAGGCAACGGCAGCTACGATCTTGTCCCACGAGGCTGAGGTGGTGGTGC
TTATAATCCCCCCCAGGATACCGGCAGCCAATCCGCAGCATGCAACCAGAATCCAAAGGTCCCAGCGAGGATGCTCGCCCGCCGGCCCAGGATGACTCTC
TCGTTTTTTGTCAGGCAACATCTATGAACCCCTGAGCAGAGTCTCCCATCAACCCTACGTCGAGGCAACTCGATGGCGCTCATTTGATTTGCCGGTCGTA
TTCCTAAGCGCCGATCAGCGGCGCGGCGGACGACTGATCGCAGCCGAACGACGAGTAGGTGTTCTCGTCGACGTTCAGATACAGCTCCGGCGTCGTGCCT
TTCACGCCGCCCGTGTTGTAGACGAACAAGATCGGCTCGCTGGCACCCATGTAGCCACCGCAGACCGTTGTATCACCGTCCTTCTCTTTATACGCCCAGG
CCCTCGACACCGAGACCACCCGGCCAACCTTGGCCGAGATCAGCTTCTCCAGCCGGCCCAGCCAGATCGACTTCTCCTCGTTGTTGACCGTGATGGTCTG
CCTCAGGCCAACGGGAGGAATGTAGTGGACGTCGTCAAAAGTGGTGTGCTGCTCAGGATCGACACGCGCCGGCACCGGCCCCCCGGCGGTGATGTCACTG
GCCGACGATGTGATAATCGGCTTGGCGACCGAAGCTGCCTGCCTGGTCGCGGGAGCTGGTGCGGTCGGTGAATTGATCACCTTTGGCGCCGGCACCGGAC
GCAGCACCCAAACTGCCGCCAGGAAAACGCCGGCGAAGATCGACGTCACCAATATCGCGAACCGCATTTCCCGCCCCCAAAAACCAATATCATCACTATA
GTGACTGGCTCTAGGTTGAGGATTCGTTGCCGCTGCCCCCTATGCGTTTGGGGCAGGCCCTCGGGATAAATGTGCGCCGGCTTCGTAAGGAGCGCGGGCT
GAGCCAGGAGGCGTTGGCCGACGCCGTCGGGCTTGCGCCGACCTATGTCGGGCAGATCGAGCGCGGCCTCAGAAACCCGACCCTGGATGTCGTGGAGCGC
TTTGCGGACGTTCTAGGCGCGGAGGCGCTGGACCTTCTGCGAGTTAGCCCTGACCCGAGATGAGCTTTTGGCGGATCACTTCTGCGTCCGGCGCATCTGC
ATCGAACGGCAGATCGTAAGCCATCAGGTCGACCGTTCGGACTCCCAGGGCCGCAAGACATTGAATCAGAAACACCCCGGAGAAGGTGCCTCTGGCCACC
TTGTTGCGGATATTGCGCTCGTTGTCGTCAACACCCAGGGGCCTCAGGCGCTCGACCATGTCGGCGTAAGTAAGTCCCTTTCGCACCATCTCTATACGGA
CTATCCGGTGCGCAACGTCGTTCCAGGCGGCCACGCGCATCTCCTATGGAGCTATAGCATCATATATGATGCTTTTTGATTGACAAACGCGCCCTGCGTC
GTGCAAAGGCATCATATATGATGCTTATGCACGGAAAGGCAGTTTGCGACAACACTTTCTCCTCAGCGCTAAGGCGCGGACGCTAGGCGTCGTCGAGATC
GCTCGTATGAGCGATGACGAAGCTTACGCCGCGTTCCGGGCGGTTCGCTTCGCGGACAACGGAGGAGAGGCCTACTGCGCTCACTGCGGGTGCGATGCCG
TTTACGAGTACGCGGCGCGGCGCATTTTCAAATGTAAGGCGTGCGAGAAGCAGTTCTCGCTAACATCGGGCACGATTTTCGCCAGCCGGAAGCTGGCGAT
CCGCGACATCCTGACGGCGATCGCGCTGTTCGTGAACGGTGCCAACGGCCACGCTGCGCTGCGGATGGGCCGCGACCTCAATGTCTCGTACAAGACCGCG
TTCGTCCTACTGCATAAGCTGCGCGAGGTGATGGGGTCGCTTAAGCCAAAGGAAATGCTCACCGGGCAAGTCGAAATTGACGGTGTATGGGTTGGCGGCC
ACGTCAAAGGACCAAACCTCAAAATCGAGCAGAAAGAGCGGCGCCGGAAGAAGGCGGGGGGCGAGCCGGAATATCCACCCAAAAATGAGGCTAAGCGCTT
CTCGGTCGTAACCATGCGGGAACGTCGCGAAGGGGGCCGCTCACTATCCTTCGTGTTTAAGAGCGAAAGCCAGGGCGTCAAATCCGTCCTGGAGAACGTT
GATCCAGCCGCTGAGGTGATCACGGACGGTGGGCCGCATTGGGGGCAGCTTGTGCTTCGGTATGCCAATACCAGCCAGGTGAACCATTCCATTGGCCACG
TTATCGATGGCGTCCATATCAACGGTGTGGAGGGCTTCAACTCGCGAATTCGACGTGGGGAGCGTGGCGTCCACCACCACATCGCCGGCCGGTATCTCCA
GTTCTACGCTGACGAGTTTGCATGGCGCGACGACCATCGCCGCGTCAGCAACGGTCAACAGTTTCAAATGGTCTTGGCGGCGGCAGCGCGGCACCCGGTG
TCGGGCGAATGGAAAGGTTTCTGGCAGCGGCGGAAAGCCGGCGCTCCGGCACGGGCACCCGCGTCCAGCGCATCGGCGGGCCGTCGAGGCGAACGACCAC
CCCCTCGTTAAAGCGCGCCTGAAAAGTGTTTTGTACGGACGAGCTGATCTTAGCCAGTGCTCGATGATCGCTAGGATCGACGCCGATCTCGACCGCGACT
ATTCGGGCGACCTCTGAGCTGGTCAGCGGCTGATCGGCGGTCCGCAGCGTCGCATAGGCAAGGCGTGAAATTTGTCCCGTCGGCTTCTTACCCTGTCGGA
AATAGATCGGCTTGATGTGGCCAGCGGTCCAATCCGGCACGTACCGCTGCCGAATTTTTGCAGCCGTCTCCTCCATCACATCTAGATACCGCTTCCGCCG
TTCGACGACGCGGGCGGCGGACAGTTCCAGCGCTTTCCGACCAACGACAACTTCTTGGACCTGCGCCGCCGTCTCGTAGTTCCCCAGCGCGCGGGCGTAT
CGCCGCTCCAGCGTCTCGATCGTAGCTTGGTTTCTCATGGGCGCATCCCGCCCGTGTATTCGTAAAAATCCCCCTACAACTTTAACTTAAGCGCCCCGAT
GAGTTGTGAAATCGATTCGACTCGGGGTCAGGAATCAGCCGACGTTTCGCTGCTCGTCGGGAGCGTCGGGAGAAATCTGATGGCAGACAAAGGTGATAAC
CTCCGTATCAAGTACGGGTTGGTCAACAATCCGAGCATCGCGCTTCAAAAGCAGTGGGCGGCTCTCACCGAGGCGCTGATCCGCCAAGGTAACACTAGCG
ACGCCGCTGGCCGACTAGCGGCGCAGCAGTTGTTCCCCGAATATAGGCAAAGAGTCTACGCCTCCGAAGGAGACGCGATCGAAATGCTGTTGCGTCAGAT
CAACGACAAATGACGCAGGCGATACCGCTCTGGCAGGCGATGGTTTCGCTATTCGGCGTAATTGTCGTCGGCCTGATCGGCCATATGGTTTCGGTTGCAA
AGCTGAAGACCGAACTTGACCAAAAGAATTTCGAAAACTCAATGAGAGTTCTCGAAACCCATGATGCTGCCTACAGGACTTACACCTCTGCAATGGAAGC
TTATGTTTTAGCTCCTGAGCCTGACTACGAAGATTTTATGAAAGTCGTCTCTTCTGGCGATGTGTATTTTAATCAGCTAAATCTGATTTGCAGCACCATG
ATTTCAGGCAAAGTAGATCACAATATCCGAGATAAAATCTGGATGCCGAAGATCAAAGTGGCCTTCGAAAAATCCCTGCCCATGCACTATGACACTCTGC
GCAATGCAGCGAAGAAGAGGGGCTTCCCCTACAAGGGCGAGCTTCGCCGGCGGGATCACGAAAGCATTTTCGCAGTAGCGGAAATGTTCAGCGCATCCGA
TGCATGGCAGCGCCCACACGAAGCCAACTAGCTCCTCTTCCATACCGTCTTTGTCGAGAAGGAAGAGTGATGCACGCTATCGCCACCCCGCCGTCAACGG
TCTTCAACTGGGATGCGCTTTCAGCACTCGCTACGCTTGCCGCGACCTTGGCAGCGATAGGGATCGCCCTAGCCACTCATATGATAGATAGCCGTCGGCG
CCGCGCAGCATCACTGAGTGCGCTGAGCTTGGCGGGCAAGATTGCGAAGGACGCAATCTCATTTTTTGAAGCCATCGCCTTGCAAGAAACTGGTTCGACG
TCGAGCCACCGAGCAAAGTTCATTGTTGGCGGTGCCCCGATGCAGGAGCTTTTCCAGAACATGGGAGAGGTCCGCCTGATGGATTTGCCAACATCATCTG
CGATCGACGCCTACAGCCGCGTGCGCTCCCACGTGAGAAGCTACGAGAAAAAGCTGGAGGTGTTGATCAACACGCCTGGTTCCGCCGGAAGGGTCGGCAT
CTCCGAACACCTTCAAGGCTGCATCGCGGCGGCAGCGATCATCGAGGCGGAACGGAAGCGATAATACCCCCGGACCCCCGATTCAGTGCCTAGGTGCGTT
TGCTCCACAATGGCG
Protein section
ORF number : 10

 

ORF 5
LengthBeginEndStrandFusion ORF
192 bp63 aa45634372-No
ORF function : Passenger Gene
Annotation : Transcriptional regulator, XRE familyDescription : Transcriptional Regulator factor

ORF sequence :

MRRLRKERGLSQEALADAVGLAPTYVGQIERGLRNPTLDVVERFADVLGAEALDLLRVSPDPR

 

Blast result :
ORF 1
LengthBeginEndStrandFusion ORF
462 bp153 aa68529+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MSNDVIPWDADQPNVLHALTRKRAEIAGQIEHNQLTLRHLIAELDHVDATIRIFNPAVDIGAIRSKPVPPRHAAFKGEVTRVVFKTLREATAPVTSRDIA
IRLMNERGLNPDDKELSVIMVKRVCACLRVQKNKGLIRNAESFGNLQGWEAVR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
297 bp98 aa8731169+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MPSTTDFQEFLDSEAPDGAQERADLAACASGPDDIGRYSSVIAPNGALIVSGGGETTLALTSPKAKAAFLAILEGEVSEPGATLEGDAEFERSMQKDD

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
825 bp274 aa26361812-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MLVEVPFQLELDGGDASFHAMPAYDGYTSLAGFSLSLSLVANYIETGKIRRRGDFTGRSAVKAFALEEGSVLSKFRVYLDGISALGTSVQIAPEAGKALL
YDTFKRTIDRNLGIEPQPQTAELRHLERTRGGDLEALVAATEPSVRQAHSVIGDGAKVMNIFGGTHQIGSFTPVTKHYVEGFYFDNTVKMRDFSVASFNV
NSGHGGVFDDEIGRVVPFAMKADVLRRVKPIMSWGLDRYANGTGETVTLRYTTVLALDDTVKKYLIQAATRPGI

 

Blast result :
ORF 4
LengthBeginEndStrandFusion ORF
564 bp187 aa42673704-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MRFAILVTSIFAGVFLAAVWVLRPVPAPKVINSPTAPAPATRQAASVAKPIITSSASDITAGGPVPARVDPEQHTTFDDVHYIPPVGLRQTITVNNEEKS
IWLGRLEKLISAKVGRVVSVSRAWAYKEKDGDTTVCGGYMGASEPILFVYNTGGVKGTTPELYLNVDENTYSSFGCDQSSAAPLIGA

 

Blast result :
ORF 6
LengthBeginEndStrandFusion ORF
297 bp98 aa48404544-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MRVAAWNDVAHRIVRIEMVRKGLTYADMVERLRPLGVDDNERNIRNKVARGTFSGVFLIQCLAALGVRTVDLMAYDLPFDADAPDAEVIRQKLISGQG

 

Blast result :
ORF 7
LengthBeginEndStrandFusion ORF
1068 bp355 aa49446011+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRQHFLLSAKARTLGVVEIARMSDDEAYAAFRAVRFADNGGEAYCAHCGCDAVYEYAARRIFKCKACEKQFSLTSGTIFASRKLAIRDILTAIALFVNGA
NGHAALRMGRDLNVSYKTAFVLLHKLREVMGSLKPKEMLTGQVEIDGVWVGGHVKGPNLKIEQKERRRKKAGGEPEYPPKNEAKRFSVVTMRERREGGRS
LSFVFKSESQGVKSVLENVDPAAEVITDGGPHWGQLVLRYANTSQVNHSIGHVIDGVHINGVEGFNSRIRRGERGVHHHIAGRYLQFYADEFAWRDDHRR
VSNGQQFQMVLAAAARHPVSGEWKGFWQRRKAGAPARAPASSASAGRRGERPPPR

 

Blast result :
ORF 8
LengthBeginEndStrandFusion ORF
315 bp104 aa64996813+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MSCEIDSTRGQESADVSLLVGSVGRNLMADKGDNLRIKYGLVNNPSIALQKQWAALTEALIRQGNTSDAAGRLAAQQLFPEYRQRVYASEGDAIEMLLRQ
INDK

 

Blast result :
ORF 9
LengthBeginEndStrandFusion ORF
522 bp173 aa68107331+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MTQAIPLWQAMVSLFGVIVVGLIGHMVSVAKLKTELDQKNFENSMRVLETHDAAYRTYTSAMEAYVLAPEPDYEDFMKVVSSGDVYFNQLNLICSTMISG
KVDHNIRDKIWMPKIKVAFEKSLPMHYDTLRNAAKKRGFPYKGELRRRDHESIFAVAEMFSASDAWQRPHEAN

 

Blast result :
ORF 10
LengthBeginEndStrandFusion ORF
561 bp186 aa73047864+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MAAPTRSQLAPLPYRLCREGRVMHAIATPPSTVFNWDALSALATLAATLAAIGIALATHMIDSRRRRAASLSALSLAGKIAKDAISFFEAIALQETGSTS
SHRAKFIVGGAPMQELFQNMGEVRLMDLPTSSAIDAYSRVRSHVRSYEKKLEVLINTPGSAGRVGISEHLQGCIAAAAIIEAERKR

 

Blast result :
Comments
ISCausp2 is 65% aa similar to ISNwi4. The transposase is the 7th ORF, others are passenger genes.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Bruce,D., Goodwin,L., Thompson,L.S., Brettin,T., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Stephens,C. and Richardson,P. (2008) Direct submission GenBank.