ISC796

  • Family IS1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY671943 ND Sulfolobus sp.
Sulfolobus sp. Y01 90#-18
DNA section
IS Length : 796 bp

Ends


IR Length : 19/21

IRL : GGTAGTGTCGTCGTTAAGTTATTTATATTTGTATAACGAGTATTACTTAT
IRR : GATAGTGTCGTCGTTAAGCTACAAATTCTGGGATTAACCTTCTCTCCCAT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGTAGTGTCGTCGTTAAGTTATTTATATTTGTATAACGAGTATTACTTATGGGTAGGAAGCCTGTATTTAGGCAAGACGTTTCTTGTCCCTCTTGTGGTA
GTCATCATGTTGTTAAGTGTGGTAGGCCTTTGGGTAGGCAGAAGTTTTTGTGTAGGGATTGTGGTAAGTACTTCTTGGGTGATGCTAGTTATCATCATCA
TTCTAGGAAGTTGAGGGAGGAGGCTTTGAGAATGTATGCTAATGGTATGAGTATGAGGGCTATTTCTAGGGTGCTTAACGTACCTCTTGGTACTGTTTTC
ACTTGGATTAAGCGTTATGGTAGGAAAAAGCATGAGAAGTTGGTTGAGTTGTGGGGTAGGGCTAAGGAGCTGGTCAAGGGTAAGGTTGTTGCTAAGGTTG
TTGATGAGATGTGGACTTACTTGTACAAGAATGCTAGGGCTTTTTACAAGTGGGTTTTCACTTGTTACGTGTCCACGAAGCTGGGAGTTTACCTCATTTA
CTCTGTGGGGGATAGGGATGAGAGTACTTTCCTTGAGGTCAAAAAGTATTTGCCTGACGAGGGTAGATGGGTGAGCGATGATTATAACTTGTACTTCTGG
TTGAAAGACCACACGGTTGTCTCGCCAGTTAACCCGAACGAGTCCTTTCATTCCTCATTAAGGGATAGGCTAATTAGATTCAAGAGAGCAACGAAGGCAG
TAAATAGGAGCATTCGCACCATGATGTACTCCATAGCCCTAGTCTTATGGGAGAGAAGGTTAATCCCAGAATTTGTAGCTTAACGACGACACTATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
735 bp244 aa49783+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGRKPVFRQDVSCPSCGSHHVVKCGRPLGRQKFLCRDCGKYFLGDASYHHHSRKLREEALRMYANGMSMRAISRVLNVPLGTVFTWIKRYGRKKHEKLVE
LWGRAKELVKGKVVAKVVDEMWTYLYKNARAFYKWVFTCYVSTKLGVYLIYSVGDRDESTFLEVKKYLPDEGRWVSDDYNLYFWLKDHTVVSPVNPNESF
HSSLRDRLIRFKRATKAVNRSIRTMMYSIALVLWERRLIPEFVA

 

Blast result :
Comments
ISC796 is 52% aa similar to ISSto7.
References
1] Blount,Z.D. and Grogan,D.W. (2005) Mol. Microbiol. 55 (1), 312-325