ISC796
- Family IS1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY671943 | ND | Sulfolobus sp. | Sulfolobus sp. Y01 90#-18 |
DNA section
IS Length : 796 bp
Ends
IR Length : 19/21
IRL : GGTAGTGTCGTCGTTAAGTTATTTATATTTGTATAACGAGTATTACTTAT
IRR : GATAGTGTCGTCGTTAAGCTACAAATTCTGGGATTAACCTTCTCTCCCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTAGTGTCGTCGTTAAGTTATTTATATTTGTATAACGAGTATTACTTATGGGTAGGAAGCCTGTATTTAGGCAAGACGTTTCTTGTCCCTCTTGTGGTA
GTCATCATGTTGTTAAGTGTGGTAGGCCTTTGGGTAGGCAGAAGTTTTTGTGTAGGGATTGTGGTAAGTACTTCTTGGGTGATGCTAGTTATCATCATCA
TTCTAGGAAGTTGAGGGAGGAGGCTTTGAGAATGTATGCTAATGGTATGAGTATGAGGGCTATTTCTAGGGTGCTTAACGTACCTCTTGGTACTGTTTTC
ACTTGGATTAAGCGTTATGGTAGGAAAAAGCATGAGAAGTTGGTTGAGTTGTGGGGTAGGGCTAAGGAGCTGGTCAAGGGTAAGGTTGTTGCTAAGGTTG
TTGATGAGATGTGGACTTACTTGTACAAGAATGCTAGGGCTTTTTACAAGTGGGTTTTCACTTGTTACGTGTCCACGAAGCTGGGAGTTTACCTCATTTA
CTCTGTGGGGGATAGGGATGAGAGTACTTTCCTTGAGGTCAAAAAGTATTTGCCTGACGAGGGTAGATGGGTGAGCGATGATTATAACTTGTACTTCTGG
TTGAAAGACCACACGGTTGTCTCGCCAGTTAACCCGAACGAGTCCTTTCATTCCTCATTAAGGGATAGGCTAATTAGATTCAAGAGAGCAACGAAGGCAG
TAAATAGGAGCATTCGCACCATGATGTACTCCATAGCCCTAGTCTTATGGGAGAGAAGGTTAATCCCAGAATTTGTAGCTTAACGACGACACTATC
GTCATCATGTTGTTAAGTGTGGTAGGCCTTTGGGTAGGCAGAAGTTTTTGTGTAGGGATTGTGGTAAGTACTTCTTGGGTGATGCTAGTTATCATCATCA
TTCTAGGAAGTTGAGGGAGGAGGCTTTGAGAATGTATGCTAATGGTATGAGTATGAGGGCTATTTCTAGGGTGCTTAACGTACCTCTTGGTACTGTTTTC
ACTTGGATTAAGCGTTATGGTAGGAAAAAGCATGAGAAGTTGGTTGAGTTGTGGGGTAGGGCTAAGGAGCTGGTCAAGGGTAAGGTTGTTGCTAAGGTTG
TTGATGAGATGTGGACTTACTTGTACAAGAATGCTAGGGCTTTTTACAAGTGGGTTTTCACTTGTTACGTGTCCACGAAGCTGGGAGTTTACCTCATTTA
CTCTGTGGGGGATAGGGATGAGAGTACTTTCCTTGAGGTCAAAAAGTATTTGCCTGACGAGGGTAGATGGGTGAGCGATGATTATAACTTGTACTTCTGG
TTGAAAGACCACACGGTTGTCTCGCCAGTTAACCCGAACGAGTCCTTTCATTCCTCATTAAGGGATAGGCTAATTAGATTCAAGAGAGCAACGAAGGCAG
TAAATAGGAGCATTCGCACCATGATGTACTCCATAGCCCTAGTCTTATGGGAGAGAAGGTTAATCCCAGAATTTGTAGCTTAACGACGACACTATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
735 bp | 244 aa | 49 | 783 | + | No |
Chemistry : DDE
ORF sequence :
MGRKPVFRQDVSCPSCGSHHVVKCGRPLGRQKFLCRDCGKYFLGDASYHHHSRKLREEALRMYANGMSMRAISRVLNVPLGTVFTWIKRYGRKKHEKLVE
LWGRAKELVKGKVVAKVVDEMWTYLYKNARAFYKWVFTCYVSTKLGVYLIYSVGDRDESTFLEVKKYLPDEGRWVSDDYNLYFWLKDHTVVSPVNPNESF
HSSLRDRLIRFKRATKAVNRSIRTMMYSIALVLWERRLIPEFVA
LWGRAKELVKGKVVAKVVDEMWTYLYKNARAFYKWVFTCYVSTKLGVYLIYSVGDRDESTFLEVKKYLPDEGRWVSDDYNLYFWLKDHTVVSPVNPNESF
HSSLRDRLIRFKRATKAVNRSIRTMMYSIALVLWERRLIPEFVA
Blast result :
Comments
ISC796 is 52% aa similar to ISSto7.
References
1] Blount,Z.D. and Grogan,D.W. (2005) Mol. Microbiol. 55 (1), 312-325