ISC1926

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY671948 ND Sulfolobus sp.
Sulfolobus sp. L00 11
DNA section
IS Length : 1925 bp

Ends


IR Length : 0

IRL : AAGGGCTGAATCCTTTCTCACGTTAATAGAAATCTTTTTATATTCATTTA
IRR : GTTTGTCCCTACACTTTCATTTCAATCATTTTATGTTCATTCATGATCGA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

AAGGGCTGAATCCTTTCTCACGTTAATAGAAATCTTTTTATATTCATTTATTATCAACTAATTTTGTGGAGAGACTACTGAGGCCTAAGGAGGCTTGCCA
ACTACTCAGCATTTCATACTCAACTCTCCTACGGTGGATTAGAGAAGGGAAAATAAGGGTGGTAACGACTGAAGGAGGGAAGTACAGAATACCTTACAGC
GAAATTAAGAAGTACTTAGAGAAGAGGGAGGAAATAAGGGCAGTAATTTACGCAAGAGTTTCATCATCAGATCAAAAAGAAGATTTGGAGAGACAAATAA
ACTACCTAACAAATTACGCAACAGCAAAGGGTTACAAGGTAGTTGAGGTGTTGAAAGATATAGCTAGCGGGTTAAACACGCAAAGGAAAGGATTGCTGAA
GCTCTTCAAACTTGTTGAGGGGAGGAGTGTTGACGTCGTATTAATAACATACAAAGACAGACTAACGCGTTTTGGATTTGAGTACATTGAAGAGCTCTTC
TCAACCATGGGAGTTAAGATTGAAGTAGTTTTCGGAGAAGAACCTAAGGATGCCACACAAGAACTTGTGGAAGATTTGATTTCCATTATTACATCATTCG
CTGGTAAAATTTACGGTATGAGGAGTCATAAGAAGACAGTCCTAGTTCAAGGTGTAAAAAAGTTGATAGGTGAGTTAAGTGGAGAGGACGATAAAGTTAA
GGGTTAGGGTTGACTATATTACATACTCAGCACTTAAGGAAGTTGAGGGGGAGTACAGAGAGGTTCTAGAGGACGCAATAAATTATGGGCTGTCAAACAA
AACTACCTCCTTCACTAGAATTAAAGCTGGAGTTTACAAGACTGAGAGGGAAAAGCACAAGGACTTACCATCCCATTACATCTACACCGCTTGTGAAGAT
GCAAGCGAGAGGTTGGACAGCTTTGAGAAGTTGAAGAAGAGAGGTAGGAGTTACACTGAGAAACCTTCAGTGAGGAAGGTCACTGTGCATCTAGATGATC
ATCTGTGGAAGTTCAGTCTCGATAAGATCTCAATTTCCACAATGCAAGGTAGGGTTTTCATTTCACCAACCTTCCCTAAGATCTTCTGGAGATATTATAA
CACGGAGTGGAGGATTGCGAGTGAAGCCAGGTTTAAGTTGTTGAAGGGAAATGTTGTAGAGTTCTTCATAGTTTTTAAGAGGGACGAGCCTAAACCTTAT
GAACCTAAGGGTTTCATCCCCGTCGACCTTAACGAGGATTCGGTCTCTGTATTAGTTGATGGAAAACCGATGCTTTTAGAGACTAACACTAAGAGGATTA
CTCTGGGCTATGAGTATAGGAGGAAGGCAATAACAACTCGTAGGTCAGCTGAGGATAGAGAAGTGAAGAGGAAGTTAAAGAGGCTGAGGGAGAGGGATAA
GAAAGTAGTCATTAGGAGGAAGTTGGCTAAGCTGATCGTTAAAGAGGCTTTTGAAAGTATGAGTGCAATTGTCTTAGAGGCCTTGCCAAGGAGACCTCCA
GAGCATATGATAAAGGACGTGAAAGACTCTCAGCTTAGGTTGAGGATTTATAGATCGGCATTTTCCTCAATGAAGAATGCTATTATAGAGAAGGCTAAGG
AGTTTAGAGTCCCCGTAGTCTTAGTTAATCCCTCATATACTTCTTCAACTTGTCCAATCCACGGGGCGAAGATCGTTTACCAACCCGATGGGGGCGATGC
CCCAAGGGTTGGTGTTTGTGAGAAGGGGAAGGAAAAGTGGCATAGGGATGTGGTTGCCCTCTATAATTTGAGGAAAAGGGCTGGAGATGTGAGCCCCGTG
CCGTTGGGCTCGAAGGAGTCCCATGACCCACCTACCGTTAAGTTAGGCAGGTGGTTGAGGGCTAAGTCCCTACACTCGATCATGAATGAACATAAAATGA
TTGAAATGAAAGTGTAGGGACAAAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
666 bp221 aa42707+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MHLLSTNFVERLLRPKEACQLLSISYSTLLRWIREGKIRVVTTEGGKYRIPYSEIKKYLEKREEIRAVIYARVSSSDQKEDLERQINYLTNYATAKGYKV
VEVLKDIASGLNTQRKGLLKLFKLVEGRSVDVVLITYKDRLTRFGFEYIEELFSTMGVKIEVVFGEEPKDATQELVEDLISIITSFAGKIYGMRSHKKTV
LVQGVKKLIGELSGEDDKVKG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1239 bp412 aa6791917+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MERTIKLRVRVDYITYSALKEVEGEYREVLEDAINYGLSNKTTSFTRIKAGVYKTEREKHKDLPSHYIYTACEDASERLDSFEKLKKRGRSYTEKPSVRK
VTVHLDDHLWKFSLDKISISTMQGRVFISPTFPKIFWRYYNTEWRIASEARFKLLKGNVVEFFIVFKRDEPKPYEPKGFIPVDLNEDSVSVLVDGKPMLL
ETNTKRITLGYEYRRKAITTRRSAEDREVKRKLKRLRERDKKVVIRRKLAKLIVKEAFESMSAIVLEALPRRPPEHMIKDVKDSQLRLRIYRSAFSSMKN
AIIEKAKEFRVPVVLVNPSYTSSTCPIHGAKIVYQPDGGDAPRVGVCEKGKEKWHRDVVALYNLRKRAGDVSPVPLGSKESHDPPTVKLGRWLRAKSLHS
IMNEHKMIEMKV

 

Blast result :
Comments
ISc1926 is 95% (ORF1) and 90% (ORF2) aa similar to ISSto13.
References
1] Blount,Z.D. and Grogan,D.W. (2005) Mol. Microbiol. 55 (1), 312-325