ISBusp1
- Family Tn3
- Group
Isoform Synonym(s) ISBmu13
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007509 | ND | Burkholderia sp. | Burkholderia sp. 383 chromosome 3 Burkholderia multivorans MSMB1640WGS |
DNA section
IS Length : 3169 bp
Ends
IR Length : 14/23
IRL : GGGCCGCTCTCGTCATCGATGCGGAGTGGCTGATGGACCACTGGCGATTG
IRR : GGGGCGCCTTTGATTTTCATGCGTTTTTCCGGTTAGGCGCTTTTAGGCCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCGCTACGCT | CAATGCCAATG | 0 |
DNA sequence
GGGCCGCTCTCGTCATCGATGCGGAGTGGCTGATGGACCACTGGCGATTGGCTTATCTCGGGATCCGGCAGGTGCCGCGCGAGCTGAGCGAGTTCGAGCT
CGCCACATTCTTCACGTTCTCCAAGCGCGAGCGTGTTGCCATTGATTCACGACGCACCGATCTCTTTCGGCTCGCAGTCGCGTTGCACATCGGTTTTCTT
CGCATGACCGGTCGGCCGCTCGGCTCGTACAAGCAGATTCCCACGGTTCTCTGGCGACATCTTGGACGACAGCTGAATGTGAAGCCGCCAGACCTTGGCA
CTTTACGTTCACTTTACGATGGCAACCTCAAGACCTTATCCGACCACCAGCGCTTTGCTCGGGATGCCATCAATTTTCGAGCCGTCGCGGAACATCAACG
TCGGTATGTCATCCGTTGGCTCAAAGAACAACTCACCGGCCGCCCCGAACGCGGCCAGTTGACGAACGATCTCAAACGTTGGTTCTACGACCATCGCATC
GTGATACCACCGGAGCGCATGCTCAGGCAGTTTGTCGTCCAGGCCGTACGCGACATTGAGGGGCAACTGCATGGCGCGCTCGAGTCTGCCGTCGGTATGG
AAAAACTCGAGAGTTGGGCGCGAGTACTGGCGCAGCCCCATGGAGAACATTCAAGTCTCCAGCGGTGGCTGTGGGCCGTCCCGCTGCGCAACTCGACCCA
TCAGATGAGCGAGATCCTCGACAAAGTCAATTTGCTCACGATGCACGAGGTGGCAACGCGTTGGCCGGTTGAATGCAACGATGCCATGGTGCGCCACTAC
GCCCGCCGTTGTGCAAGCCGTCCGCCATCGATCAGCAAGCGAATCGAACCCCAAAGCCGACGAATCGAAGCCGCCTGCTTCATGCGGTATTCCCTCTGTA
TTGCGACTGATCAGGTACTCGAGATGCTCCGGCGATGGGTACTGAAGGTTGTCAACGACACGTCACGCGAAGTGGATGCGATGCGGATGAAGGCCGCGGA
TCAACTCCGCGAGTTCGCGCTTGCCGTCAAAGCACTTGCCAATGATGAAACCCTCTCGCGCGAACAGCTCGGGGAGAAGCTTTGTCTGCTTGCAGACGAT
GTTTTGCAACCGCATCCCACCAGCCGTCGGAGCCAGATCCGGCAGTGCCTGGTCCGAAAGCGGTACTACGCCCGTAACCTTTTGAATCGGATCGTGCAGC
TGCCGTTCGAGGCCGAGGGTGCTCATCCTGTAGTCGATGCGCTCTCGTTACTACGTGTGCTATATCGACGTCGCGCTTATCTCCTGCCCGACGGGGTCAA
TATCAGGCTTGGGCGCACGTGGCGCGAGGCGATCGATGGTTACGATCGGCTGCGGGCCATGGTTGCTTTCGAGTGGGCCACCCTCTTTGCGCTCCGTGTC
GCCCTGCGCAACGGCTCGGTTTTCATCAACCACAGCTTCTCGTTCAGAAGTCAGTCGCATATGCTGATCTCGCCCGAGCAGTGGCAGGCAAAGCGCAATA
ATCACTACGGACACCTCGGCCTGCCCCAAGACCCGAACGAATTTCTCGGGCCGATCCTTGAGCAGCTCGATAAGCGCCTTGCTCTACTCGACGATGCGGT
GGTCAATGGTTCGATCCGCGTGGATACTGCTGTCCACCTCGACCCGTTGGCTGCGCAGGATCCAGACGCACAAACCGATCAACTTCGCCGCCAGATCTTC
GAAGCACATCCGCCTGGCCAATTTCCCGAGATCATCCTCGAGATCGATAGTGCGACACGCTTCAGTTGGATCCTGCTCGGACGCGAGCCGCGGTCACGCA
CCGAGTTACTGATGGTGTATTCGGCGATACTGGCTCACGGGACCTCGCTGACGGCTGCTGATATTTCTCGGATGGTCCCGGAGGTGTCAACCGAAGCGAT
TCGCCAAATGATGAAGCGTCTCGCGGACGAACGAATGCTGCGTGCAGCCGCCGACGCCGTTCTCGAGTTCATGCACGAGCACCCAATCGCCGCCCACTGG
GGCCGAGCCGATCTCGCATCGTCTGACATGATGTCGCTGGAGACAACCCGGACGATTTGGCGAGCACGTGCAGACCCTCGTCGCCGTACGGCATCCATCG
GGATGTACACGCATGTGCTGGATCGTTGGGGCATTTTCTACGACCAGCCCATCATCCTGAATGAGCGACAAGCAGGCGCAGCAATCGAGGGCGTCGTCCG
GCAAAGCGCAACCAAGGACATCGCTCAACTCGCCGTCGATACGCACGGTTACACCGATTTCGCGATGGGCGTGTCCCGGGCACTTGGCTTTGATTTATGC
CCTCGCCTGTCACACCTTCGTGACCGACGTCTGCACGTGCCTCGCAGTCAGGTGGTGCCGGCGCGGCTCGCAGGGGTCACGGATCGCGACGTCCGACTCG
GTCTCATCGTTGACGTGTGGGACGAATTCGTGAGGATCGCCGCATCAATTCGCTCTGGCCAATGCACGGCGGTCGAAGCGATTGCCAGATTCGGATCAGC
TGCTCGAGGGCAGGCTGTGTACGATGGCGGCGTTCACATCGGCCGCCTATTCAGAAGTATTTTTCTGATCGACTACTTCACCAATGCCTCTTTCCGGTCG
GAGTTGCAACATGCCCTGAATCGGGGAGAAGCCGTGCATACCGTGCAACGCGCAATTCACATCGGTCGCATTCCGGTGGAGCTAGCTCGGCGCCAGGAAT
CGCTCGCGGCAGTGTCGTCGGCGTTGACCCTGCTCTCGAACATCTTGATGGCCTGGAATACCACCCACATGCAACGAGCCCTGGAGAACATCGAAGCTAC
CCGGGGGCAGCCGATCGCGGCCGAGCAACTCCGGCGAATCGCCCCAACTCATATCGAGGGCATCAACTTGCGCGGCACCTTCAATTTTCCCGTGTCACTG
TACGCAAAGCGGATCTTGCCGAGCATCGCGGCCGACAACCCCATTCCGTCAACCAGTCGGAGCGCCTAACGACGGGGTGAACTGGCGCCGCCGGTGAAGG
GACCTCTCATCTTCGATTCACCTCGTCCGGAGACACCCTCTGCTTCGATAGCGTAGGGTAGACACTAAGCCATTGTTTTATCGGAATTAATATTTAGGGC
CGCAAGGCAAGGCCTTGTCGGGCCTAAAAGCGCCTAACCGGAAAAACGCATGAAAATCAAAGGCGCCCC
CGCCACATTCTTCACGTTCTCCAAGCGCGAGCGTGTTGCCATTGATTCACGACGCACCGATCTCTTTCGGCTCGCAGTCGCGTTGCACATCGGTTTTCTT
CGCATGACCGGTCGGCCGCTCGGCTCGTACAAGCAGATTCCCACGGTTCTCTGGCGACATCTTGGACGACAGCTGAATGTGAAGCCGCCAGACCTTGGCA
CTTTACGTTCACTTTACGATGGCAACCTCAAGACCTTATCCGACCACCAGCGCTTTGCTCGGGATGCCATCAATTTTCGAGCCGTCGCGGAACATCAACG
TCGGTATGTCATCCGTTGGCTCAAAGAACAACTCACCGGCCGCCCCGAACGCGGCCAGTTGACGAACGATCTCAAACGTTGGTTCTACGACCATCGCATC
GTGATACCACCGGAGCGCATGCTCAGGCAGTTTGTCGTCCAGGCCGTACGCGACATTGAGGGGCAACTGCATGGCGCGCTCGAGTCTGCCGTCGGTATGG
AAAAACTCGAGAGTTGGGCGCGAGTACTGGCGCAGCCCCATGGAGAACATTCAAGTCTCCAGCGGTGGCTGTGGGCCGTCCCGCTGCGCAACTCGACCCA
TCAGATGAGCGAGATCCTCGACAAAGTCAATTTGCTCACGATGCACGAGGTGGCAACGCGTTGGCCGGTTGAATGCAACGATGCCATGGTGCGCCACTAC
GCCCGCCGTTGTGCAAGCCGTCCGCCATCGATCAGCAAGCGAATCGAACCCCAAAGCCGACGAATCGAAGCCGCCTGCTTCATGCGGTATTCCCTCTGTA
TTGCGACTGATCAGGTACTCGAGATGCTCCGGCGATGGGTACTGAAGGTTGTCAACGACACGTCACGCGAAGTGGATGCGATGCGGATGAAGGCCGCGGA
TCAACTCCGCGAGTTCGCGCTTGCCGTCAAAGCACTTGCCAATGATGAAACCCTCTCGCGCGAACAGCTCGGGGAGAAGCTTTGTCTGCTTGCAGACGAT
GTTTTGCAACCGCATCCCACCAGCCGTCGGAGCCAGATCCGGCAGTGCCTGGTCCGAAAGCGGTACTACGCCCGTAACCTTTTGAATCGGATCGTGCAGC
TGCCGTTCGAGGCCGAGGGTGCTCATCCTGTAGTCGATGCGCTCTCGTTACTACGTGTGCTATATCGACGTCGCGCTTATCTCCTGCCCGACGGGGTCAA
TATCAGGCTTGGGCGCACGTGGCGCGAGGCGATCGATGGTTACGATCGGCTGCGGGCCATGGTTGCTTTCGAGTGGGCCACCCTCTTTGCGCTCCGTGTC
GCCCTGCGCAACGGCTCGGTTTTCATCAACCACAGCTTCTCGTTCAGAAGTCAGTCGCATATGCTGATCTCGCCCGAGCAGTGGCAGGCAAAGCGCAATA
ATCACTACGGACACCTCGGCCTGCCCCAAGACCCGAACGAATTTCTCGGGCCGATCCTTGAGCAGCTCGATAAGCGCCTTGCTCTACTCGACGATGCGGT
GGTCAATGGTTCGATCCGCGTGGATACTGCTGTCCACCTCGACCCGTTGGCTGCGCAGGATCCAGACGCACAAACCGATCAACTTCGCCGCCAGATCTTC
GAAGCACATCCGCCTGGCCAATTTCCCGAGATCATCCTCGAGATCGATAGTGCGACACGCTTCAGTTGGATCCTGCTCGGACGCGAGCCGCGGTCACGCA
CCGAGTTACTGATGGTGTATTCGGCGATACTGGCTCACGGGACCTCGCTGACGGCTGCTGATATTTCTCGGATGGTCCCGGAGGTGTCAACCGAAGCGAT
TCGCCAAATGATGAAGCGTCTCGCGGACGAACGAATGCTGCGTGCAGCCGCCGACGCCGTTCTCGAGTTCATGCACGAGCACCCAATCGCCGCCCACTGG
GGCCGAGCCGATCTCGCATCGTCTGACATGATGTCGCTGGAGACAACCCGGACGATTTGGCGAGCACGTGCAGACCCTCGTCGCCGTACGGCATCCATCG
GGATGTACACGCATGTGCTGGATCGTTGGGGCATTTTCTACGACCAGCCCATCATCCTGAATGAGCGACAAGCAGGCGCAGCAATCGAGGGCGTCGTCCG
GCAAAGCGCAACCAAGGACATCGCTCAACTCGCCGTCGATACGCACGGTTACACCGATTTCGCGATGGGCGTGTCCCGGGCACTTGGCTTTGATTTATGC
CCTCGCCTGTCACACCTTCGTGACCGACGTCTGCACGTGCCTCGCAGTCAGGTGGTGCCGGCGCGGCTCGCAGGGGTCACGGATCGCGACGTCCGACTCG
GTCTCATCGTTGACGTGTGGGACGAATTCGTGAGGATCGCCGCATCAATTCGCTCTGGCCAATGCACGGCGGTCGAAGCGATTGCCAGATTCGGATCAGC
TGCTCGAGGGCAGGCTGTGTACGATGGCGGCGTTCACATCGGCCGCCTATTCAGAAGTATTTTTCTGATCGACTACTTCACCAATGCCTCTTTCCGGTCG
GAGTTGCAACATGCCCTGAATCGGGGAGAAGCCGTGCATACCGTGCAACGCGCAATTCACATCGGTCGCATTCCGGTGGAGCTAGCTCGGCGCCAGGAAT
CGCTCGCGGCAGTGTCGTCGGCGTTGACCCTGCTCTCGAACATCTTGATGGCCTGGAATACCACCCACATGCAACGAGCCCTGGAGAACATCGAAGCTAC
CCGGGGGCAGCCGATCGCGGCCGAGCAACTCCGGCGAATCGCCCCAACTCATATCGAGGGCATCAACTTGCGCGGCACCTTCAATTTTCCCGTGTCACTG
TACGCAAAGCGGATCTTGCCGAGCATCGCGGCCGACAACCCCATTCCGTCAACCAGTCGGAGCGCCTAACGACGGGGTGAACTGGCGCCGCCGGTGAAGG
GACCTCTCATCTTCGATTCACCTCGTCCGGAGACACCCTCTGCTTCGATAGCGTAGGGTAGACACTAAGCCATTGTTTTATCGGAATTAATATTTAGGGC
CGCAAGGCAAGGCCTTGTCGGGCCTAAAAGCGCCTAACCGGAAAAACGCATGAAAATCAAAGGCGCCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 2937 bp | 978 aa | 33 | 2969 | + | No |
Chemistry : DDE
ORF sequence :
MDHWRLAYLGIRQVPRELSEFELATFFTFSKRERVAIDSRRTDLFRLAVALHIGFLRMTGRPLGSYKQIPTVLWRHLGRQLNVKPPDLGTLRSLYDGNLK
TLSDHQRFARDAINFRAVAEHQRRYVIRWLKEQLTGRPERGQLTNDLKRWFYDHRIVIPPERMLRQFVVQAVRDIEGQLHGALESAVGMEKLESWARVLA
QPHGEHSSLQRWLWAVPLRNSTHQMSEILDKVNLLTMHEVATRWPVECNDAMVRHYARRCASRPPSISKRIEPQSRRIEAACFMRYSLCIATDQVLEMLR
RWVLKVVNDTSREVDAMRMKAADQLREFALAVKALANDETLSREQLGEKLCLLADDVLQPHPTSRRSQIRQCLVRKRYYARNLLNRIVQLPFEAEGAHPV
VDALSLLRVLYRRRAYLLPDGVNIRLGRTWREAIDGYDRLRAMVAFEWATLFALRVALRNGSVFINHSFSFRSQSHMLISPEQWQAKRNNHYGHLGLPQD
PNEFLGPILEQLDKRLALLDDAVVNGSIRVDTAVHLDPLAAQDPDAQTDQLRRQIFEAHPPGQFPEIILEIDSATRFSWILLGREPRSRTELLMVYSAIL
AHGTSLTAADISRMVPEVSTEAIRQMMKRLADERMLRAAADAVLEFMHEHPIAAHWGRADLASSDMMSLETTRTIWRARADPRRRTASIGMYTHVLDRWG
IFYDQPIILNERQAGAAIEGVVRQSATKDIAQLAVDTHGYTDFAMGVSRALGFDLCPRLSHLRDRRLHVPRSQVVPARLAGVTDRDVRLGLIVDVWDEFV
RIAASIRSGQCTAVEAIARFGSAARGQAVYDGGVHIGRLFRSIFLIDYFTNASFRSELQHALNRGEAVHTVQRAIHIGRIPVELARRQESLAAVSSALTL
LSNILMAWNTTHMQRALENIEATRGQPIAAEQLRRIAPTHIEGINLRGTFNFPVSLYAKRILPSIAADNPIPSTSRSA
TLSDHQRFARDAINFRAVAEHQRRYVIRWLKEQLTGRPERGQLTNDLKRWFYDHRIVIPPERMLRQFVVQAVRDIEGQLHGALESAVGMEKLESWARVLA
QPHGEHSSLQRWLWAVPLRNSTHQMSEILDKVNLLTMHEVATRWPVECNDAMVRHYARRCASRPPSISKRIEPQSRRIEAACFMRYSLCIATDQVLEMLR
RWVLKVVNDTSREVDAMRMKAADQLREFALAVKALANDETLSREQLGEKLCLLADDVLQPHPTSRRSQIRQCLVRKRYYARNLLNRIVQLPFEAEGAHPV
VDALSLLRVLYRRRAYLLPDGVNIRLGRTWREAIDGYDRLRAMVAFEWATLFALRVALRNGSVFINHSFSFRSQSHMLISPEQWQAKRNNHYGHLGLPQD
PNEFLGPILEQLDKRLALLDDAVVNGSIRVDTAVHLDPLAAQDPDAQTDQLRRQIFEAHPPGQFPEIILEIDSATRFSWILLGREPRSRTELLMVYSAIL
AHGTSLTAADISRMVPEVSTEAIRQMMKRLADERMLRAAADAVLEFMHEHPIAAHWGRADLASSDMMSLETTRTIWRARADPRRRTASIGMYTHVLDRWG
IFYDQPIILNERQAGAAIEGVVRQSATKDIAQLAVDTHGYTDFAMGVSRALGFDLCPRLSHLRDRRLHVPRSQVVPARLAGVTDRDVRLGLIVDVWDEFV
RIAASIRSGQCTAVEAIARFGSAARGQAVYDGGVHIGRLFRSIFLIDYFTNASFRSELQHALNRGEAVHTVQRAIHIGRIPVELARRQESLAAVSSALTL
LSNILMAWNTTHMQRALENIEATRGQPIAAEQLRRIAPTHIEGINLRGTFNFPVSLYAKRILPSIAADNPIPSTSRSA
Blast result :
Comments
ISbusp1 is 65% aa similar to IS1071.
References
1] ISfinder annotation (2009)