ISBse1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABHZ01000008 ND Bacillus selenitireducens
Bacillus selenitireducens MLS10
DNA section
IS Length : 1635 bp

Ends


IR Length : 24/29

IRL : GGCTCTGTTAAAGCTTGTTGTTGATATTTGCTTAAAACGAACAAATGTTC
IRR : GGCTCTGTTAAAGTTCAATGTTGGTATTTATATAAAAAACGACACTCCCA

Insertion site


Left flankDirect repeatRight flankDR Length
GGGTTGTATGGGGAATTGTGAAGAAAAAGAAAAGTCT8

DNA sequence

GGCTCTGTTAAAGCTTGTTGTTGATATTTGCTTAAAACGAACAAATGTTCTATAATGAAGTCATCAAACAAAAGCAGGTGACGACTGTGAGAACAACCGA
TATCCTTAAAACCATTCAAAAACTTAATCCAGCGGAAAAGCATCGGTTACGGGAATATTTAATCGATGCCCTTACTGCGTCATCGTCAACAGGAACGGTG
CTGGAGGAAATCTCTGAACGGAAGCATAAGGACGGTTATCGTTGTCCTGATTGCGAGTCAGAGCATATTGTGCGGTTTGGTAATTACCCTATTATCGCGG
ACGGTGAAGAAGTGAAGAAACAGCGTTATCGCTGTAAGGCTTGTCGAAGGACGTTCACCGACCTTACTAATACAGCATTATATCGAACTCGTCATCTTAA
TCGTTGGATGAAGTTTATTGAATGTATGATAGAAGGCTATTCGCTTCGTAAATCGGCGGAGTTGATTGGAGGCGTTACTCACGTCACATTATTTTATTGG
CGGCATAAGCTCCTCTCTGCATTAAAACAGACGGAAATCTCAAATTTCCAAGGTATCGTTGAAATGGACGAGACCTATTTTCTGTACTCTGAAAAAGGAC
AAAAAAAGATTGAAGATAGAAAGCCTCGAAAGCGTGGTGGTTCCGCAAAGAAACGGGGCATAAGCAACGAACAGGTATGTGTCCTCGTTGCAAGAGACCG
CGAAAAGGTCACATTTTCCCAAGCGTTAGGAATGGGTCGGTTAACAAAAGAGCAATTAGATAAATCCATCGGGCATAAACTTTCCAAAGAGAATGTGTTA
TGTACCGATGGTTGGCGTGCATTTAAAGTCTATGCCTTTGAAAAAGAGATGGACATTTATCAGTTCAAGTCTGACGGTAACATTCGCACAAAGGGGCTTT
ATCACATCCAAAACGTCAACAACTACCACCGCCGACTGAAAGGTTGGATACAACGCTTTAACGGTGTCGCCACCAAATATCTGAACAATTACCTTGCGTG
GTTTCAAGTGTTAGAAAGCATCCATCATCAGCGAAACGAAGTTACAATGAAAGATATGATAATTAAAGGGAATTTAATTCCAAACAAAGAAACTTATGAT
ACACTTAGATTATCCAAATTCACTGTATAAAAGCTGGTTCTTAATCAACTAACGGGGAATTTAGCATCTTTCTATACTTTTTTTGCCTATCGTTTCTTTT
GCAACATTTCAACTTCTATTTTTCGATATTAGAACGATGGGTAAAGAGAGGTAATATATAATACTTGTTCTTAAACAAGCGGGTTAGCGTTAGCAGAATA
ATAAATTTCAGGAGGTTAAATAAATATGAGTGAACCTTTAAAAATCTACATCGGACTAATAATAGTGATACCTTTTTTAGTTATGTTTATAACAAATGTA
TCGGTATCAAATTCTGGAGGACTTAGTGCCGTTCTATATTTTCTTTCTTTAATTTCAACACATTTAGTTGTAAATAAAATTCAAAGTTCTTTAAACTGAA
GAAAGCTTTTGTGAAAGATTGTACTTAAGCTAACGGTGGCGTTAGTTGAAGAAGACAATAAAACCAAACGACACTCCTAGTTTTATGGGAGTGTCGTTTT
TTATATAAATACCAACATTGAACTTTAACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa871130+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRTTDILKTIQKLNPAEKHRLREYLIDALTASSSTGTVLEEISERKHKDGYRCPDCESEHIVRFGNYPIIADGEEVKKQRYRCKACRRTFTDLTNTALYR
TRHLNRWMKFIECMIEGYSLRKSAELIGGVTHVTLFYWRHKLLSALKQTEISNFQGIVEMDETYFLYSEKGQKKIEDRKPRKRGGSAKKRGISNEQVCVL
VARDREKVTFSQALGMGRLTKEQLDKSIGHKLSKENVLCTDGWRAFKVYAFEKEMDIYQFKSDGNIRTKGLYHIQNVNNYHRRLKGWIQRFNGVATKYLN
NYLAWFQVLESIHHQRNEVTMKDMIIKGNLIPNKETYDTLRLSKFTV

 

Blast result :
Comments
ISBse1 is 71% aa similar to ISBwe1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Richardson,P. (2007) Direct submission GenBank.