ISBrsp5
- Family IS66
- Group ISBst12
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009445 | ND | Bradyrhizobium sp. | Bradyrhizobium sp. ORS278 |
DNA section
IS Length : 1541 bp
Ends
IR Length : 18/19
IRL : GTAACTGCCCAGGTACCCGACCTCATCCCTTGACTGACCCCATGCGTTTG
IRR : GTAACTGCCCAGGTCCCCGCTCGGTCAAGCGAGGCGGATTTTATGGGTGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATTGCGAGTC | GCGTAGCG | AAGCAATCCA | 8 |
| GTCATTGCGA | GCGTAGCG | AAGCAATCCA | 8 |
DNA sequence
GTAACTGCCCAGGTACCCGACCTCATCCCTTGACTGACCCCATGCGTTTGTGAGTCAAGGTATGGATGAAGCCACCGCACTCATTGTCGGTTGATTCGCT
GCTGGCCCTGATTGGGGAGTTGCAGGCGCGCAACCTGATGCTGGAACAGCAGAACGCGTTGCTGTTGGCCCGTGTGGCCGATCTGGAGCGCCGGCTTGGT
CTGGATAGCTCCAATAGCAGCAAACCGCCTTCGAGCGATGGGCCGGGCCAGGGTCCGCGCCGGACACGCAGCCTTCGCGAGCGAGGGGTGAGGAAGCCCG
GCGGCCAGCCAGGTCATCCAGGCAAGCACTTGAAGCGGTCGGACCAGGTCGATCATACAATCATCCATCGCCCCGCCACGTGCAGAGGCTGCCAAGCGGC
GCTGGGCGAGGAGCCGTTGGACTTTGTCGACAGCCGTCAGGTGTTCGATCTGCCGGCGCCGAGGCCGCTGATCGTCACGGAGCATCAGCGCTATCGTTGC
ACATGCAGCGGCTGTGGCGCAGTCACGACGGGAACGTTTCCCACGGAGGTCAAGGCGCCAGCGCAATATGGCGCACGGTTGTCCGCCGTGGTGACGTATC
TGTCGGCTGGACAGTTCCTGCCTGAAGATCGTTTGGGACAGGTCCTCACCGATCTGTTTGGCGTGACTGTCTCGGCCGGCACGATCGGGCAGATGATCGC
CCGTGCCGCCAGTCGGACGCGGGATTTCGCTGCGGCAGTCTGCGAAGAGATCCGCGGAGCACCGGTCAAGCATCTGGATGAGACCGGGTTTTGGGTGGGT
GCCACGCCGCAATGGCTGCATGTCGCGGGCACCGCCGGGATCAACGGGCTGGTGCATTATCGCGTGTCCCAAAGGCGCGGCGAGGTGCTGACGCAAGCGG
CGCATATCGTGATGCACGACCACTGGACATCCTATTTTCAGATGCCGGGGGTCACGCATGCGCTGTGCAATGCGCATCATCTGCGCGAGCTGACGGCGCT
GGTGGACATCGACGGCGAGGCCTGGGCTCGACGCATGCGTACGCTGCTCCGAGACCTGTGCCATGAGGTCAATCTGGCGCCGGAGCGTCCAGCCGGCCAG
ACAGGTGCGCTGCCTCCCGCCAAAATCCGCACCGCCGAGCGGAAGTATGACCGTATCATCCGCGCCGGCATCGCCTGGCACGAGGCGCTTCCCGCACTGC
CGCGCGATGTCAAACGCGGACGGATCAGGCGGCGCACCGGCCATAATCTCCTGCTGCGCCTCAAGCTGCACAAAGAGGCAGTGCTACTGTTCCTGCGCAA
CCCGGCGGTGCCGTTTACCAACAACGAGGCCGAGCGCGATGCCCGCATGATGAAGTTGCGGCAGAAGATCTCTGGCGGCTTTCGCACCTCTCAAGGCGCG
GACAACTTCGCAACGCTACGTACCTTGATCGGCACCGCTCGAAAGCGCGGATGGAACATGCTCGAAACATTGTCCGCATGCCCAACACAGCTCACCCATA
AAATCCGCCTCGCTTGACCGAGCGGGGACCTGGGCAGTTAC
GCTGGCCCTGATTGGGGAGTTGCAGGCGCGCAACCTGATGCTGGAACAGCAGAACGCGTTGCTGTTGGCCCGTGTGGCCGATCTGGAGCGCCGGCTTGGT
CTGGATAGCTCCAATAGCAGCAAACCGCCTTCGAGCGATGGGCCGGGCCAGGGTCCGCGCCGGACACGCAGCCTTCGCGAGCGAGGGGTGAGGAAGCCCG
GCGGCCAGCCAGGTCATCCAGGCAAGCACTTGAAGCGGTCGGACCAGGTCGATCATACAATCATCCATCGCCCCGCCACGTGCAGAGGCTGCCAAGCGGC
GCTGGGCGAGGAGCCGTTGGACTTTGTCGACAGCCGTCAGGTGTTCGATCTGCCGGCGCCGAGGCCGCTGATCGTCACGGAGCATCAGCGCTATCGTTGC
ACATGCAGCGGCTGTGGCGCAGTCACGACGGGAACGTTTCCCACGGAGGTCAAGGCGCCAGCGCAATATGGCGCACGGTTGTCCGCCGTGGTGACGTATC
TGTCGGCTGGACAGTTCCTGCCTGAAGATCGTTTGGGACAGGTCCTCACCGATCTGTTTGGCGTGACTGTCTCGGCCGGCACGATCGGGCAGATGATCGC
CCGTGCCGCCAGTCGGACGCGGGATTTCGCTGCGGCAGTCTGCGAAGAGATCCGCGGAGCACCGGTCAAGCATCTGGATGAGACCGGGTTTTGGGTGGGT
GCCACGCCGCAATGGCTGCATGTCGCGGGCACCGCCGGGATCAACGGGCTGGTGCATTATCGCGTGTCCCAAAGGCGCGGCGAGGTGCTGACGCAAGCGG
CGCATATCGTGATGCACGACCACTGGACATCCTATTTTCAGATGCCGGGGGTCACGCATGCGCTGTGCAATGCGCATCATCTGCGCGAGCTGACGGCGCT
GGTGGACATCGACGGCGAGGCCTGGGCTCGACGCATGCGTACGCTGCTCCGAGACCTGTGCCATGAGGTCAATCTGGCGCCGGAGCGTCCAGCCGGCCAG
ACAGGTGCGCTGCCTCCCGCCAAAATCCGCACCGCCGAGCGGAAGTATGACCGTATCATCCGCGCCGGCATCGCCTGGCACGAGGCGCTTCCCGCACTGC
CGCGCGATGTCAAACGCGGACGGATCAGGCGGCGCACCGGCCATAATCTCCTGCTGCGCCTCAAGCTGCACAAAGAGGCAGTGCTACTGTTCCTGCGCAA
CCCGGCGGTGCCGTTTACCAACAACGAGGCCGAGCGCGATGCCCGCATGATGAAGTTGCGGCAGAAGATCTCTGGCGGCTTTCGCACCTCTCAAGGCGCG
GACAACTTCGCAACGCTACGTACCTTGATCGGCACCGCTCGAAAGCGCGGATGGAACATGCTCGAAACATTGTCCGCATGCCCAACACAGCTCACCCATA
AAATCCGCCTCGCTTGACCGAGCGGGGACCTGGGCAGTTAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1452 bp | 483 aa | 66 | 1517 | + | No |
Chemistry : DDE
ORF sequence :
MKPPHSLSVDSLLALIGELQARNLMLEQQNALLLARVADLERRLGLDSSNSSKPPSSDGPGQGPRRTRSLRERGVRKPGGQPGHPGKHLKRSDQVDHTII
HRPATCRGCQAALGEEPLDFVDSRQVFDLPAPRPLIVTEHQRYRCTCSGCGAVTTGTFPTEVKAPAQYGARLSAVVTYLSAGQFLPEDRLGQVLTDLFGV
TVSAGTIGQMIARAASRTRDFAAAVCEEIRGAPVKHLDETGFWVGATPQWLHVAGTAGINGLVHYRVSQRRGEVLTQAAHIVMHDHWTSYFQMPGVTHAL
CNAHHLRELTALVDIDGEAWARRMRTLLRDLCHEVNLAPERPAGQTGALPPAKIRTAERKYDRIIRAGIAWHEALPALPRDVKRGRIRRRTGHNLLLRLK
LHKEAVLLFLRNPAVPFTNNEAERDARMMKLRQKISGGFRTSQGADNFATLRTLIGTARKRGWNMLETLSACPTQLTHKIRLA
HRPATCRGCQAALGEEPLDFVDSRQVFDLPAPRPLIVTEHQRYRCTCSGCGAVTTGTFPTEVKAPAQYGARLSAVVTYLSAGQFLPEDRLGQVLTDLFGV
TVSAGTIGQMIARAASRTRDFAAAVCEEIRGAPVKHLDETGFWVGATPQWLHVAGTAGINGLVHYRVSQRRGEVLTQAAHIVMHDHWTSYFQMPGVTHAL
CNAHHLRELTALVDIDGEAWARRMRTLLRDLCHEVNLAPERPAGQTGALPPAKIRTAERKYDRIIRAGIAWHEALPALPRDVKRGRIRRRTGHNLLLRLK
LHKEAVLLFLRNPAVPFTNNEAERDARMMKLRQKISGGFRTSQGADNFATLRTLIGTARKRGWNMLETLSACPTQLTHKIRLA
Blast result :
Comments
ISBrsp5 is 55% aa similar to ISArch14.
References
1] Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytryn,E., Avarre,J.C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G., Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A., Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C., Franck,W.L., Chang,W.S., Saunders,E., Bruce,D., Richardson,P., Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D., Vermeglio,A., Medigue,C. and Sadowsky,M. (2007) Science 316 (5829), 1307-1312.
2] Genoscope (2006) Direct Submission GenBank.
3] NCBI Genome Project (2004) Direct Submission GenBank.
4] ISfinder annotation (2008).
2] Genoscope (2006) Direct Submission GenBank.
3] NCBI Genome Project (2004) Direct Submission GenBank.
4] ISfinder annotation (2008).