ISAzvi1
- Family IS1595
- Group ISPna2
Isoform Synonym(s) IS101
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AF322366 | Y | Azotobacter vinelandii | Azotobacter vinelandii OP Azotobacter vinelandii UW |
DNA section
IS Length : 1027 bp
Ends
IR Length : 25
IRL : GGCTATGTCTGAGTTAGCTGTTGCAGCAGGCTAAGCTGATCATGGCGTCT
IRR : GGCTATGTCTGAGTTAGCTGTTGCATGGCTACTCGCCCCAGCGCCTCCCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCAAGAGGCT | TTCATCAA | AGCCTATCGT | 8 |
| GCTCAAGAGGCT | TTCATCAA | AGCCTATCGTGC | 8 |
| ATTATCGGGGAG | TTAGGCAA | AGACCTTGGAGG | 8 |
DNA sequence
GGCTATGTCTGAGTTAGCTGTTGCAGCAGGCTAAGCTGATCATGGCGTCTCTGCATGCGGGAGGTGGATCATGAAAGCGAGTCAGTTCACGCGATGGATC
GCTCAGCTCTCCAACCTCAGCCCGGAACAGCGTGAGCAGCTGAAGGCATGCCTGTCGGCACCAGGCAGCCTTCCGCAGGAGATGATCGCCACGCCCAGCA
GTTGCCCGCACTGTCAGTCCAGCGAGTTACAGCCGTGGGGCTCCAGTGGCGGCCTGCCACGGTATCGCTGCAAGTTTTGCGGCAAAACCAGCAACCCATT
GACGGGTACACCGATGGCGCGCCTGCGAAAGCGCCATCTCTGGCAAGGCTATGCCGAGGCGTTGACCCAGAGCCTGACGGTACGCAGGGCGGCGAAACAC
TGTGGCGTCAGTAAGAACACAGCCTTCCTGTGGCGACACCGGTTCCTGACCCAGATCGCCGATCACCAGGCTCAGCATGAGTCCGGGATTGTCGAGGCCG
ATGAAACCTTCTTCCTGGAGTCTTTCAAGGGACAGCGAGACTTGCCGCGCCCACCTCGCAGGCGCGGAGGCAGCGCGAAGCAACGCGGGTTGTCTGCCGA
GCAGATTCCTGTCCTGGTGGTGAGAGATCGCAGCGGCCAGCATGCCGACTTTCAGCTGAAGAAGCTCGATGCCGTGCATGTCAGGGAGCGACTACGCCCC
CTGATCGATGCTGATGCGATTCTTTGCTCTGACAGTGCCGCCGTCTATGCCCACTTTGCCAAGGCAGAAGGCATCACCCATCAGCCGGTCAATCCGAGCC
AGAAGCGCAGGGTCGATGGGCCTTTTCACATCCAGAACGTGAACGCCTATGACAGCCGACTGAAGAGCTGGATGATTCCCTTTCATGGGGTGGCCACCAA
GTATCTGACCCATTACCTGGGATGGCGCCGCCTGCTCGAACGCTACAAGACGCAGCTCAATCCATTGATTTGCTTGAGGGAGGCGCTGGGGCGAGTAGCC
ATGCAACAGCTAACTCAGACATAGCC
GCTCAGCTCTCCAACCTCAGCCCGGAACAGCGTGAGCAGCTGAAGGCATGCCTGTCGGCACCAGGCAGCCTTCCGCAGGAGATGATCGCCACGCCCAGCA
GTTGCCCGCACTGTCAGTCCAGCGAGTTACAGCCGTGGGGCTCCAGTGGCGGCCTGCCACGGTATCGCTGCAAGTTTTGCGGCAAAACCAGCAACCCATT
GACGGGTACACCGATGGCGCGCCTGCGAAAGCGCCATCTCTGGCAAGGCTATGCCGAGGCGTTGACCCAGAGCCTGACGGTACGCAGGGCGGCGAAACAC
TGTGGCGTCAGTAAGAACACAGCCTTCCTGTGGCGACACCGGTTCCTGACCCAGATCGCCGATCACCAGGCTCAGCATGAGTCCGGGATTGTCGAGGCCG
ATGAAACCTTCTTCCTGGAGTCTTTCAAGGGACAGCGAGACTTGCCGCGCCCACCTCGCAGGCGCGGAGGCAGCGCGAAGCAACGCGGGTTGTCTGCCGA
GCAGATTCCTGTCCTGGTGGTGAGAGATCGCAGCGGCCAGCATGCCGACTTTCAGCTGAAGAAGCTCGATGCCGTGCATGTCAGGGAGCGACTACGCCCC
CTGATCGATGCTGATGCGATTCTTTGCTCTGACAGTGCCGCCGTCTATGCCCACTTTGCCAAGGCAGAAGGCATCACCCATCAGCCGGTCAATCCGAGCC
AGAAGCGCAGGGTCGATGGGCCTTTTCACATCCAGAACGTGAACGCCTATGACAGCCGACTGAAGAGCTGGATGATTCCCTTTCATGGGGTGGCCACCAA
GTATCTGACCCATTACCTGGGATGGCGCCGCCTGCTCGAACGCTACAAGACGCAGCTCAATCCATTGATTTGCTTGAGGGAGGCGCTGGGGCGAGTAGCC
ATGCAACAGCTAACTCAGACATAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 954 bp | 317 aa | 71 | 1024 | + | No |
Chemistry : DDE
ORF sequence :
MKASQFTRWIAQLSNLSPEQREQLKACLSAPGSLPQEMIATPSSCPHCQSSELQPWGSSGGLPRYRCKFCGKTSNPLTGTPMARLRKRHLWQGYAEALTQ
SLTVRRAAKHCGVSKNTAFLWRHRFLTQIADHQAQHESGIVEADETFFLESFKGQRDLPRPPRRRGGSAKQRGLSAEQIPVLVVRDRSGQHADFQLKKLD
AVHVRERLRPLIDADAILCSDSAAVYAHFAKAEGITHQPVNPSQKRRVDGPFHIQNVNAYDSRLKSWMIPFHGVATKYLTHYLGWRRLLERYKTQLNPLI
CLREALGRVAMQQLTQT
SLTVRRAAKHCGVSKNTAFLWRHRFLTQIADHQAQHESGIVEADETFFLESFKGQRDLPRPPRRRGGSAKQRGLSAEQIPVLVVRDRSGQHADFQLKKLD
AVHVRERLRPLIDADAILCSDSAAVYAHFAKAEGITHQPVNPSQKRRVDGPFHIQNVNAYDSRLKSWMIPFHGVATKYLTHYLGWRRLLERYKTQLNPLI
CLREALGRVAMQQLTQT
Blast result :
Comments
ISAzvi1 is 47% aa similar to ISH4.
The sequence inserted in the database correspond to the complete sequence found in the sequenced genome (CP005095). The original sequence described in AF322366 exhibits a non expected frameshift and could be inactive.
The sequence inserted in the database correspond to the complete sequence found in the sequenced genome (CP005095). The original sequence described in AF322366 exhibits a non expected frameshift and could be inactive.
References
1] Page,W.J., Tindale,A., Chandra,M. and Kwon,E.(2001) Microbiology 147 (Pt 2), 483-490
Meakins,D., Tindale,A.E. and Page,W.J (2001) Direct submission GenBank.
2] Noar,J.D. and Bruno-Barcena,J.M. (2013) Genome Announc 1 (3)
Meakins,D., Tindale,A.E. and Page,W.J (2001) Direct submission GenBank.
2] Noar,J.D. and Bruno-Barcena,J.M. (2013) Genome Announc 1 (3)