ISAur1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AEVG01000111 | ND | Actinobacillus ureae | Actinobacillus ureae ATCC 25976 |
DNA section
IS Length : 4947 bp
Ends
IR Length : 28/30
IRL : GGCTGTGTTTTAACAATGTGTTGATTTTTATACTAAATTTTGATAAAATT
IRR : GGCTGTGTTTTAACGATGTGTTGATATTTAATTTTAGAAAAGGTAGCTAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAAGCGGTTAAAATTTTA | TTAAATTTTAAAGCAATCCGCCGCA | 0 |
DNA sequence
GGCTGTGTTTTAACAATGTGTTGATTTTTATACTAAATTTTGATAAAATTCCTTATAATGAATTGAATTATAATGGATTTTAGCATGTCGGGCGTAACAA
AAGAATTAGACATTTTAAAACAACTTTTTGAAAAGTTGTCCGATACGGATAAACAGGCTTTTTTGACTTCTGCCAGCTCAAAAGAACAGGTTAAAAAAGT
CATTGAACAAAAAAAAGTTACGAATTGCCCACATTGTCAATCTACGCATTTTGTAAAAAATGGTACGAAATGCAATAACCAACGCTATTTGTGTCGTGAT
TGCAAAAAATCTTTTGTTGAGCAAACAGGCACTATTCTCTACAACACGCAAAAAGACATTGAAGTTTGGGAAAAATACATTCATTGCATGATTGAAAAAT
ACCCACTCCGCAAATGTGCTGAAATTTGTGAAATCAATCTTGCTACTGCGTTTACTTGGCGGCACAAAATTTTAGACGCACTTCAAAACATGATGAATGA
AGTTGAGTTAGACGGCATTGTGCAAGCCGATGAAACTTATTCGACGATTTCTTACAAAGGACATCACAAGGATTTTCAACTGCCGCGCCCTGCTCACAAA
CGCGGGACAAGAGCCGGTAAGCGCGGCATTTCAAAAGAACAAGTCTGTGTTCCTTGCGGTATCGATTTAGACGGTAAATCTGTTGCTAAAATTAGCAATT
TGGGTAAGCAGTCTCTAAAAGGTTTACAAAAAGTTCTAAATGGCAAAGTTGCCAAAGATTCTGTATTCGTTACCGATTCTTTAAGACCGTATCAAAAATT
ATCGTTGGACATGAATTTAAGCCATATCCGCATTCCACGCGGTAAACGTGCTGTCGGTACATTCAACATTCAAACCGTCAACAGCTACCACAGCAGGCTG
AAAAACCTGATTGTCCACCGCTTCAAAGGTGTGGCAACCAAGTATCTGAATAATTACTTGGTGTATCACAATTTCGTGAATTTTGCCAAAGATACTTTGG
CGAATAAAGAAGCTGTTTTGCTGGATTTCATTCGCAAAACCATGTGCACAATTAAGTCGGCAGACGTGGCTAAACGTCCTGCTATTCCTGTGTAAATTAA
CTTGACTTTCAAATTTAAGGTGTAATCATGTGCCTACAAGCCTAGTTTAATCTTGTCTTTTCAAACTTCCAACACTTATTTGGAGGTTTGAAATGTCTAA
ACTTCAATATCAATTCAACGAAAAATCAAATCAAATTTTTTCTCCACTAAATAACAAACCGTTAACATCACTCCCGAGGAAGAAATACGTCAAAAATTTA
TTTGTGTGTTGGTAAATGAATATGGTTATTCACTTAATCAAATGGCACAAGAATTGAGTCTAACCAATTCCAGTCGTGGTACTGGGCGAGCCAGAGCGGA
TATTGTTATTTGGAAATCCGAGCAAGCCAAAAAAAATAACGAACACGCCGCCATTGTAATTGAATGCAAATCCGACAACGTAACCATTCAGCCCGAAGAC
TATTATCAAGGCTTAAATTATGCTACTTGGGCCGGGGCTAATTTTTTTGTTACTCATAACAGTAAAGAAACTCGCTATTTTCAAGTTTTCAAAGAAAAAA
TCCCTAAATACCTAGGTAAAGAATTATCAGAATTACCAACAGCAAAACAACTTGTTGATAGCAAAGTCATCGAAGAGATGCTCAAAGCTGAAAAAGTTTT
TGAAAAAGATGAATTTGCCAAGCTACTGCATCAATGCCACAGTATTATTCGTAATAATGACAAATTATCTCCCGAAGCCTCATTTGATGAAATTAGCAAA
ATTTTGTTTATGAAAATTATGTATGAACGAAATAAACAAAAAGGGAAGATATTTACCAAAGAAGAATTTTTAGAACAAGAAAGTCATTATGAAAAGAATA
TACGTCCGGTAAATGTACGAAGAAATGGACCTAAAGATGATATTTCTTATGTGACTTATTGGTTTGATGACACAAAAAATGCATATAAGGCAGAGCAATT
ATTTGAAGATGATGAGGTTATTAAGATTCGTAGAGAAAGTTTCTTAGCAATTCTGGAAAAACTACAAATATACAATCTTTCTAAAACATCTGATGATGTA
AAGGGCGTTGCTTTTGAGAAATTTTTAGGGACAACATTTCGTGGTGAGTTAGGACAATTTTTCACACCGCGCAGTGTGGTGGAATTTATGACCGAAATTT
TAGATCCACAAGAAGGAGAACGCGTATGCGATCCTTGTAGTGGTTCTGGTGGTTTTTTGATTAACGCCTTTGAATATATGCGGGAATCCATTCGACAAGA
TTTAGAAGAAGAAAAAGAATCCATAAAAAATCGCTATTTTGATGAAGCCTACGAGCAGGCAGATGAACAGCAAAAAGCCAATATAGAAGCTAAAGTTGAT
GGCTTATTTAGCGAACTAAATAGCGAGCTAGATTTAGACAACCCAAATAGCCGTTTGTACCAACTTTCGCACAATTGCATTTATGGAACAGACGCTAATC
CGAGAATGGCACGAGTATCCAAAATGAATATGATTATGCACGGCGATGGGCACGGTGGCGTACATCACAATGATGGTTTGTTGAATATAAATGGTATTTT
TGAAGAACGCTTTGATGTAATTTTAACTAATCCACCTTTCGGTTCTCGTGTAGCAAAAGATTTAAAATTAACTCAAGAAGATAGCCTAATTGACAAGCCA
CATTATAAAAATTGGAAAGCTAAATATGAGAATTATGAACGTATCGGAAATGAGCGAAAATTAGAAATTGAAGAAAATAAAGTCATTGTTGATAAATTTG
AAGTGAGTAAGTTTAGCACTTTAACCGAAGTGATGTTTATTGAACGCTGCCTGAAACTGTTACGCAAAGGCGGACGTATGGGCATTGTTTTGCCGAAAGG
CGTATTAAATAATGGCGATTTACAAAAAGTTCGACATTATTTTGAAAGTAAAGCCAAAATTATTTTAATCACGTCCATTCCGCAAGATGTATTTGTTGCA
TCAGGTGCAACCGTGAAGCCTAGTATTGTCTTTCTGAAACGCTTTACTGAAAGCGAAGAACAGGAATATTTAACCGCTAAAATGCAAGCTACCGCCGAAG
TAGAGCAAAAATACGCCCAGCGAAAAGCCAAACTTCAAGCAATTTTGGATAAAAAAGCGGATAAATTACCACCCAAAGCCACAGATGAACAAAAAACCGA
ACAAAATCGCTTAAAAGATGAATTGAAACAAGCGAAAAAACAGGCGAAAAATGAACTCAAACAGTTAGAAATCCAAATTAAAGATGAAATCCGTCAAGCA
ATTAAAACCAAGTTTGACTACCAAATTCCGCTTGCAGAAGTAGAAAAAGCAGGGATTGACAGTACAGGTGCAGCCATTGAAAACGATTTACCAAAGCTAA
AAGACGAATATACACAATATCGCAAAGCTAAAAGTATTTGGGAAAATCATACCGCCCATCATTACGAGTACACAGAAAACGGTGGTAAATTAGAACGCAC
TTTACGCACGTTTGCGGAAAGGGCGGAATAATGGGAACAAGCAATTTTCAAACAGCTTTTTTGCATTTTGTAGATTTTTCGCAATTCAATAACTGGAATG
TAAAACAATACGTTAATACAAATTTGCTGAAATCAAATTTCAAAATTGAATTTTTGGCAGAACACTTAATTGAACAAAATAACAAAATCAAGCCTTTTGA
TTTTCCTGAAAAAGATTTTGCGATTTTGGGTGTGGATAACAAAGTAGGAATTTTTGATGCCTATATTTCAAAAGGCAAAGAAATCAATCAGCCATACAAA
AAAATGGAAACAGGTTTTATTGCCTACAATCCTTACCGTATTAACGTAGGTTCAATCGGATTGAAAACCGAAAAACATCAGCACCAATATATTAGCCCAG
CTTATGTGGTATTCAGTTGTCAGACTACATTGCTGCCTGAATATTTATTTTTGGTTTTCAAAACGAATTTTTACAACCGTATTATCAGAGAAAATACAAC
AGGTTCGGTTCGGCAAAATTTGAGTTTTGATAATTTGATTAAAATGCAAATTCCCTTACCTGACATCAACACGCAAAAAGCATTAGCCCAAGCCTATCAA
GATAAAATGGCAAAGGCCGATGAATTGGAAAAACAAGCCAATCAAATAGATAGCGATATTGAGCAATATCTGTTTGAACAGCTTGGCATTGAAATTCAAC
AAACTCAAAAAGTACAAACTGGGAAATTGCAGTTTGTGAATTTTAGGGATTTGAATTTATGGGGAGTTGTCAGTCAAGATGCCATTACTGCTGAAACTAT
TTTTAAATCCAATCAATTTAAAAATAAACCTATTACAAACTTTTTTGAAATTAACCCAACTACACAAATTCCCAGTAACCAAATCATTAGCTTCATTCCA
ATGGCAAATGTTTCTGACATTTATGGAGAAATTTCCATTTACGACAAGCAAACATTAAAGCCCAACTACACTAAATTTAAAGAAAATGATTTAATTTGGG
CAAAAATTACACCGTGTATGGAAAATGGAAAATCTGCGATTGCAAGCAATTTAGAAAATGGTTTTGGATTTGGTTCAACGGAATTTCATGTTTTGCGAGC
CAAAAACAAAGATTTTTCTATTCATTTGCTACATTCGCTTTTGCGTACCAGCCATTTAAGAAAAATTGCGACTCAGTATTTTACAGGTTCAGCAGGTCAG
CAACGAGTTCCAAAATCATTTTTGAAAGCCTTAACTCTGCCTGTTTTAAACCTAGAAATTCAAACCAAAATTCTCACATATATTCAAACCCAAAAGCAGC
AGCAAAAAGATAGTTTAGCTACTGCTTCTGCATATCGTATTGAGGCGTTAATGGAATTTGAGAAAGCTATTTTTAAATAAGAAAAGGTAACTATTAAATA
GCTACCTTTTCTAAAATTAAATATCAACACATCGTTAAAACACAGCC
AAGAATTAGACATTTTAAAACAACTTTTTGAAAAGTTGTCCGATACGGATAAACAGGCTTTTTTGACTTCTGCCAGCTCAAAAGAACAGGTTAAAAAAGT
CATTGAACAAAAAAAAGTTACGAATTGCCCACATTGTCAATCTACGCATTTTGTAAAAAATGGTACGAAATGCAATAACCAACGCTATTTGTGTCGTGAT
TGCAAAAAATCTTTTGTTGAGCAAACAGGCACTATTCTCTACAACACGCAAAAAGACATTGAAGTTTGGGAAAAATACATTCATTGCATGATTGAAAAAT
ACCCACTCCGCAAATGTGCTGAAATTTGTGAAATCAATCTTGCTACTGCGTTTACTTGGCGGCACAAAATTTTAGACGCACTTCAAAACATGATGAATGA
AGTTGAGTTAGACGGCATTGTGCAAGCCGATGAAACTTATTCGACGATTTCTTACAAAGGACATCACAAGGATTTTCAACTGCCGCGCCCTGCTCACAAA
CGCGGGACAAGAGCCGGTAAGCGCGGCATTTCAAAAGAACAAGTCTGTGTTCCTTGCGGTATCGATTTAGACGGTAAATCTGTTGCTAAAATTAGCAATT
TGGGTAAGCAGTCTCTAAAAGGTTTACAAAAAGTTCTAAATGGCAAAGTTGCCAAAGATTCTGTATTCGTTACCGATTCTTTAAGACCGTATCAAAAATT
ATCGTTGGACATGAATTTAAGCCATATCCGCATTCCACGCGGTAAACGTGCTGTCGGTACATTCAACATTCAAACCGTCAACAGCTACCACAGCAGGCTG
AAAAACCTGATTGTCCACCGCTTCAAAGGTGTGGCAACCAAGTATCTGAATAATTACTTGGTGTATCACAATTTCGTGAATTTTGCCAAAGATACTTTGG
CGAATAAAGAAGCTGTTTTGCTGGATTTCATTCGCAAAACCATGTGCACAATTAAGTCGGCAGACGTGGCTAAACGTCCTGCTATTCCTGTGTAAATTAA
CTTGACTTTCAAATTTAAGGTGTAATCATGTGCCTACAAGCCTAGTTTAATCTTGTCTTTTCAAACTTCCAACACTTATTTGGAGGTTTGAAATGTCTAA
ACTTCAATATCAATTCAACGAAAAATCAAATCAAATTTTTTCTCCACTAAATAACAAACCGTTAACATCACTCCCGAGGAAGAAATACGTCAAAAATTTA
TTTGTGTGTTGGTAAATGAATATGGTTATTCACTTAATCAAATGGCACAAGAATTGAGTCTAACCAATTCCAGTCGTGGTACTGGGCGAGCCAGAGCGGA
TATTGTTATTTGGAAATCCGAGCAAGCCAAAAAAAATAACGAACACGCCGCCATTGTAATTGAATGCAAATCCGACAACGTAACCATTCAGCCCGAAGAC
TATTATCAAGGCTTAAATTATGCTACTTGGGCCGGGGCTAATTTTTTTGTTACTCATAACAGTAAAGAAACTCGCTATTTTCAAGTTTTCAAAGAAAAAA
TCCCTAAATACCTAGGTAAAGAATTATCAGAATTACCAACAGCAAAACAACTTGTTGATAGCAAAGTCATCGAAGAGATGCTCAAAGCTGAAAAAGTTTT
TGAAAAAGATGAATTTGCCAAGCTACTGCATCAATGCCACAGTATTATTCGTAATAATGACAAATTATCTCCCGAAGCCTCATTTGATGAAATTAGCAAA
ATTTTGTTTATGAAAATTATGTATGAACGAAATAAACAAAAAGGGAAGATATTTACCAAAGAAGAATTTTTAGAACAAGAAAGTCATTATGAAAAGAATA
TACGTCCGGTAAATGTACGAAGAAATGGACCTAAAGATGATATTTCTTATGTGACTTATTGGTTTGATGACACAAAAAATGCATATAAGGCAGAGCAATT
ATTTGAAGATGATGAGGTTATTAAGATTCGTAGAGAAAGTTTCTTAGCAATTCTGGAAAAACTACAAATATACAATCTTTCTAAAACATCTGATGATGTA
AAGGGCGTTGCTTTTGAGAAATTTTTAGGGACAACATTTCGTGGTGAGTTAGGACAATTTTTCACACCGCGCAGTGTGGTGGAATTTATGACCGAAATTT
TAGATCCACAAGAAGGAGAACGCGTATGCGATCCTTGTAGTGGTTCTGGTGGTTTTTTGATTAACGCCTTTGAATATATGCGGGAATCCATTCGACAAGA
TTTAGAAGAAGAAAAAGAATCCATAAAAAATCGCTATTTTGATGAAGCCTACGAGCAGGCAGATGAACAGCAAAAAGCCAATATAGAAGCTAAAGTTGAT
GGCTTATTTAGCGAACTAAATAGCGAGCTAGATTTAGACAACCCAAATAGCCGTTTGTACCAACTTTCGCACAATTGCATTTATGGAACAGACGCTAATC
CGAGAATGGCACGAGTATCCAAAATGAATATGATTATGCACGGCGATGGGCACGGTGGCGTACATCACAATGATGGTTTGTTGAATATAAATGGTATTTT
TGAAGAACGCTTTGATGTAATTTTAACTAATCCACCTTTCGGTTCTCGTGTAGCAAAAGATTTAAAATTAACTCAAGAAGATAGCCTAATTGACAAGCCA
CATTATAAAAATTGGAAAGCTAAATATGAGAATTATGAACGTATCGGAAATGAGCGAAAATTAGAAATTGAAGAAAATAAAGTCATTGTTGATAAATTTG
AAGTGAGTAAGTTTAGCACTTTAACCGAAGTGATGTTTATTGAACGCTGCCTGAAACTGTTACGCAAAGGCGGACGTATGGGCATTGTTTTGCCGAAAGG
CGTATTAAATAATGGCGATTTACAAAAAGTTCGACATTATTTTGAAAGTAAAGCCAAAATTATTTTAATCACGTCCATTCCGCAAGATGTATTTGTTGCA
TCAGGTGCAACCGTGAAGCCTAGTATTGTCTTTCTGAAACGCTTTACTGAAAGCGAAGAACAGGAATATTTAACCGCTAAAATGCAAGCTACCGCCGAAG
TAGAGCAAAAATACGCCCAGCGAAAAGCCAAACTTCAAGCAATTTTGGATAAAAAAGCGGATAAATTACCACCCAAAGCCACAGATGAACAAAAAACCGA
ACAAAATCGCTTAAAAGATGAATTGAAACAAGCGAAAAAACAGGCGAAAAATGAACTCAAACAGTTAGAAATCCAAATTAAAGATGAAATCCGTCAAGCA
ATTAAAACCAAGTTTGACTACCAAATTCCGCTTGCAGAAGTAGAAAAAGCAGGGATTGACAGTACAGGTGCAGCCATTGAAAACGATTTACCAAAGCTAA
AAGACGAATATACACAATATCGCAAAGCTAAAAGTATTTGGGAAAATCATACCGCCCATCATTACGAGTACACAGAAAACGGTGGTAAATTAGAACGCAC
TTTACGCACGTTTGCGGAAAGGGCGGAATAATGGGAACAAGCAATTTTCAAACAGCTTTTTTGCATTTTGTAGATTTTTCGCAATTCAATAACTGGAATG
TAAAACAATACGTTAATACAAATTTGCTGAAATCAAATTTCAAAATTGAATTTTTGGCAGAACACTTAATTGAACAAAATAACAAAATCAAGCCTTTTGA
TTTTCCTGAAAAAGATTTTGCGATTTTGGGTGTGGATAACAAAGTAGGAATTTTTGATGCCTATATTTCAAAAGGCAAAGAAATCAATCAGCCATACAAA
AAAATGGAAACAGGTTTTATTGCCTACAATCCTTACCGTATTAACGTAGGTTCAATCGGATTGAAAACCGAAAAACATCAGCACCAATATATTAGCCCAG
CTTATGTGGTATTCAGTTGTCAGACTACATTGCTGCCTGAATATTTATTTTTGGTTTTCAAAACGAATTTTTACAACCGTATTATCAGAGAAAATACAAC
AGGTTCGGTTCGGCAAAATTTGAGTTTTGATAATTTGATTAAAATGCAAATTCCCTTACCTGACATCAACACGCAAAAAGCATTAGCCCAAGCCTATCAA
GATAAAATGGCAAAGGCCGATGAATTGGAAAAACAAGCCAATCAAATAGATAGCGATATTGAGCAATATCTGTTTGAACAGCTTGGCATTGAAATTCAAC
AAACTCAAAAAGTACAAACTGGGAAATTGCAGTTTGTGAATTTTAGGGATTTGAATTTATGGGGAGTTGTCAGTCAAGATGCCATTACTGCTGAAACTAT
TTTTAAATCCAATCAATTTAAAAATAAACCTATTACAAACTTTTTTGAAATTAACCCAACTACACAAATTCCCAGTAACCAAATCATTAGCTTCATTCCA
ATGGCAAATGTTTCTGACATTTATGGAGAAATTTCCATTTACGACAAGCAAACATTAAAGCCCAACTACACTAAATTTAAAGAAAATGATTTAATTTGGG
CAAAAATTACACCGTGTATGGAAAATGGAAAATCTGCGATTGCAAGCAATTTAGAAAATGGTTTTGGATTTGGTTCAACGGAATTTCATGTTTTGCGAGC
CAAAAACAAAGATTTTTCTATTCATTTGCTACATTCGCTTTTGCGTACCAGCCATTTAAGAAAAATTGCGACTCAGTATTTTACAGGTTCAGCAGGTCAG
CAACGAGTTCCAAAATCATTTTTGAAAGCCTTAACTCTGCCTGTTTTAAACCTAGAAATTCAAACCAAAATTCTCACATATATTCAAACCCAAAAGCAGC
AGCAAAAAGATAGTTTAGCTACTGCTTCTGCATATCGTATTGAGGCGTTAATGGAATTTGAGAAAGCTATTTTTAAATAAGAAAAGGTAACTATTAAATA
GCTACCTTTTCTAAAATTAAATATCAACACATCGTTAAAACACAGCC
Protein section
ORF number : 3
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1023 bp | 340 aa | 73 | 1095 | + | No |
Chemistry : DDE
ORF sequence :
MDFSMSGVTKELDILKQLFEKLSDTDKQAFLTSASSKEQVKKVIEQKKVTNCPHCQSTHFVKNGTKCNNQRYLCRDCKKSFVEQTGTILYNTQKDIEVWE
KYIHCMIEKYPLRKCAEICEINLATAFTWRHKILDALQNMMNEVELDGIVQADETYSTISYKGHHKDFQLPRPAHKRGTRAGKRGISKEQVCVPCGIDLD
GKSVAKISNLGKQSLKGLQKVLNGKVAKDSVFVTDSLRPYQKLSLDMNLSHIRIPRGKRAVGTFNIQTVNSYHSRLKNLIVHRFKGVATKYLNNYLVYHN
FVNFAKDTLANKEAVLLDFIRKTMCTIKSADVAKRPAIPV
KYIHCMIEKYPLRKCAEICEINLATAFTWRHKILDALQNMMNEVELDGIVQADETYSTISYKGHHKDFQLPRPAHKRGTRAGKRGISKEQVCVPCGIDLD
GKSVAKISNLGKQSLKGLQKVLNGKVAKDSVFVTDSLRPYQKLSLDMNLSHIRIPRGKRAVGTFNIQTVNSYHSRLKNLIVHRFKGVATKYLNNYLVYHN
FVNFAKDTLANKEAVLLDFIRKTMCTIKSADVAKRPAIPV
Blast result :ORF 2
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 2226 bp | 741 aa | 1306 | 3531 | + | No |
Annotation : N-6 DNA MethylaseDescription :
ORF sequence :
MLVNEYGYSLNQMAQELSLTNSSRGTGRARADIVIWKSEQAKKNNEHAAIVIECKSDNVTIQPEDYYQGLNYATWAGANFFVTHNSKETRYFQVFKEKIP
KYLGKELSELPTAKQLVDSKVIEEMLKAEKVFEKDEFAKLLHQCHSIIRNNDKLSPEASFDEISKILFMKIMYERNKQKGKIFTKEEFLEQESHYEKNIR
PVNVRRNGPKDDISYVTYWFDDTKNAYKAEQLFEDDEVIKIRRESFLAILEKLQIYNLSKTSDDVKGVAFEKFLGTTFRGELGQFFTPRSVVEFMTEILD
PQEGERVCDPCSGSGGFLINAFEYMRESIRQDLEEEKESIKNRYFDEAYEQADEQQKANIEAKVDGLFSELNSELDLDNPNSRLYQLSHNCIYGTDANPR
MARVSKMNMIMHGDGHGGVHHNDGLLNINGIFEERFDVILTNPPFGSRVAKDLKLTQEDSLIDKPHYKNWKAKYENYERIGNERKLEIEENKVIVDKFEV
SKFSTLTEVMFIERCLKLLRKGGRMGIVLPKGVLNNGDLQKVRHYFESKAKIILITSIPQDVFVASGATVKPSIVFLKRFTESEEQEYLTAKMQATAEVE
QKYAQRKAKLQAILDKKADKLPPKATDEQKTEQNRLKDELKQAKKQAKNELKQLEIQIKDEIRQAIKTKFDYQIPLAEVEKAGIDSTGAAIENDLPKLKD
EYTQYRKAKSIWENHTAHHYEYTENGGKLERTLRTFAERAE
KYLGKELSELPTAKQLVDSKVIEEMLKAEKVFEKDEFAKLLHQCHSIIRNNDKLSPEASFDEISKILFMKIMYERNKQKGKIFTKEEFLEQESHYEKNIR
PVNVRRNGPKDDISYVTYWFDDTKNAYKAEQLFEDDEVIKIRRESFLAILEKLQIYNLSKTSDDVKGVAFEKFLGTTFRGELGQFFTPRSVVEFMTEILD
PQEGERVCDPCSGSGGFLINAFEYMRESIRQDLEEEKESIKNRYFDEAYEQADEQQKANIEAKVDGLFSELNSELDLDNPNSRLYQLSHNCIYGTDANPR
MARVSKMNMIMHGDGHGGVHHNDGLLNINGIFEERFDVILTNPPFGSRVAKDLKLTQEDSLIDKPHYKNWKAKYENYERIGNERKLEIEENKVIVDKFEV
SKFSTLTEVMFIERCLKLLRKGGRMGIVLPKGVLNNGDLQKVRHYFESKAKIILITSIPQDVFVASGATVKPSIVFLKRFTESEEQEYLTAKMQATAEVE
QKYAQRKAKLQAILDKKADKLPPKATDEQKTEQNRLKDELKQAKKQAKNELKQLEIQIKDEIRQAIKTKFDYQIPLAEVEKAGIDSTGAAIENDLPKLKD
EYTQYRKAKSIWENHTAHHYEYTENGGKLERTLRTFAERAE
Blast result :ORF 3
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1350 bp | 449 aa | 3531 | 4880 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MGTSNFQTAFLHFVDFSQFNNWNVKQYVNTNLLKSNFKIEFLAEHLIEQNNKIKPFDFPEKDFAILGVDNKVGIFDAYISKGKEINQPYKKMETGFIAYN
PYRINVGSIGLKTEKHQHQYISPAYVVFSCQTTLLPEYLFLVFKTNFYNRIIRENTTGSVRQNLSFDNLIKMQIPLPDINTQKALAQAYQDKMAKADELE
KQANQIDSDIEQYLFEQLGIEIQQTQKVQTGKLQFVNFRDLNLWGVVSQDAITAETIFKSNQFKNKPITNFFEINPTTQIPSNQIISFIPMANVSDIYGE
ISIYDKQTLKPNYTKFKENDLIWAKITPCMENGKSAIASNLENGFGFGSTEFHVLRAKNKDFSIHLLHSLLRTSHLRKIATQYFTGSAGQQRVPKSFLKA
LTLPVLNLEIQTKILTYIQTQKQQQKDSLATASAYRIEALMEFEKAIFK
PYRINVGSIGLKTEKHQHQYISPAYVVFSCQTTLLPEYLFLVFKTNFYNRIIRENTTGSVRQNLSFDNLIKMQIPLPDINTQKALAQAYQDKMAKADELE
KQANQIDSDIEQYLFEQLGIEIQQTQKVQTGKLQFVNFRDLNLWGVVSQDAITAETIFKSNQFKNKPITNFFEINPTTQIPSNQIISFIPMANVSDIYGE
ISIYDKQTLKPNYTKFKENDLIWAKITPCMENGKSAIASNLENGFGFGSTEFHVLRAKNKDFSIHLLHSLLRTSHLRKIATQYFTGSAGQQRVPKSFLKA
LTLPVLNLEIQTKILTYIQTQKQQQKDSLATASAYRIEALMEFEKAIFK
Blast result :
Comments
ISAur1 is 64% (transposase) aa similar to ISCco2.
References
1] ISfinder annotation (2017)
2] Muzny,D., Qin,X., Deng,J., Jiang,H., Liu,Y., Qu,J., Song,X.-Z., Zhang,L., Thornton,R., Coyle,M., Francisco,L., Jackson,L., Javaid,M., Korchina,V., Kovar,C., Mata,R., Mathew,T., Ngo,R., Nguyen,L., Nguyen,N., Okwuonu,G., Ongeri,F., Pham,C., Simmons,D., Wilczek-Boney,K., Hale,W., Jakkamsetti,A., Pham,P., Ruth,R., San Lucas,F., Warren,J., Zhang,J., Zhao,Z., Zhou,C., Zhu,D., Lee,S., Bess,C., Blankenburg,K., Forbes,L., Fu,Q., Gubbala,S., Hirani,K., Jayaseelan,J.C., Lara,F., Munidasa,M., Palculict,T., Patil,S., Pu,L.-L., Saada,N., Tang,L., Weissenberger,G., Zhu,Y., Hemphill,L., Shang,Y., Youmans,B., Ayvaz,T., Ross,M., Santibanez,J., Aqrawi,P., Gross,S., Joshi,V., Fowler,G., Nazareth,L., Reid,J., Worley,K., Petrosino,J., Highlander,S. and Gibbs,R. (2011) Direct GenBank submission.
2] Muzny,D., Qin,X., Deng,J., Jiang,H., Liu,Y., Qu,J., Song,X.-Z., Zhang,L., Thornton,R., Coyle,M., Francisco,L., Jackson,L., Javaid,M., Korchina,V., Kovar,C., Mata,R., Mathew,T., Ngo,R., Nguyen,L., Nguyen,N., Okwuonu,G., Ongeri,F., Pham,C., Simmons,D., Wilczek-Boney,K., Hale,W., Jakkamsetti,A., Pham,P., Ruth,R., San Lucas,F., Warren,J., Zhang,J., Zhao,Z., Zhou,C., Zhu,D., Lee,S., Bess,C., Blankenburg,K., Forbes,L., Fu,Q., Gubbala,S., Hirani,K., Jayaseelan,J.C., Lara,F., Munidasa,M., Palculict,T., Patil,S., Pu,L.-L., Saada,N., Tang,L., Weissenberger,G., Zhu,Y., Hemphill,L., Shang,Y., Youmans,B., Ayvaz,T., Ross,M., Santibanez,J., Aqrawi,P., Gross,S., Joshi,V., Fowler,G., Nazareth,L., Reid,J., Worley,K., Petrosino,J., Highlander,S. and Gibbs,R. (2011) Direct GenBank submission.