IS981
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
M33933 | Y | Lactococcus lactis | Lactococcus lactis subsp. lactis biovar diacetylactis WM4 Lactococcus lactis subsp. cremoris SK11 Lactococcus lactis subsp. lactis ML3 Lactococcus lactis subsp. lactis LM0230 Lactococcus lactis subsp. cremoris C3 Lactococcus lactis subsp. lactis 11454 Lactococcus lactis subsp. lactis biovar diacetylactis 18-16 |
DNA section
IS Length : 1224 bp
Ends
IR Length : 18/28
IRL : TGATGTTATCCTTAAATCTTAGAGTCACTATTGTATAATTTAGACAAAGG
IRR : TGACGTTAAGTCAAGTTTTTAGAGTAACAAACGTAGAATTTTAATCTATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTAGGAGTA | TAT | TTCTCTGATA | 3 |
DNA sequence
TGATGTTATCCTTAAATCTTAGAGTCACTATTGTATAATTTAGACAAAGGACAAAAACATGCAAAAACGCTACTCAAAAGAATTTAAAGAAACCCTTATC
GCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTA
ATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATT
CGCCGAGAAAAAGAAGTGAGTGCTGCGGATATGGCTCAAACCATACAAACTTTAGCACTCAATGTCAGACTAAGCTGTCAACTCCTTGATGTTCCTGAAT
CAAGTTATTATGAACGGATTAACCGACACCCATCTAAAACTCAATTAAGGAGACAATACCTGTCACTCAAAATTTCTCAACTCTTCAATGCTAACCGAGG
AATCTATGGTGCTCCTAAAATTCATCATCTTCTACTTAAACAAGGGGAAAAAGTCGGGTTAAAACTGGTACAGAAGCTAATGAAGCAACTTCAACTCAAG
TCTGTAGTCATTAAGAAATTTAAGCCTGGATACTCACTAAGTGATCACATCAATCGAAAAAATCTCATACAGACTGAACCTACAAAGAAAAATAAGGTTT
GGTCAACCGACATTACTTATATTCCTACTCAACAAGGATGGGCTTATCTCTCAACCATTATGGATCGTTATACTAAAAAAGTCATTGCTTGGGATTTGGG
CAAGCGAATGACTGTAGAATTAGTGCAAAGAACTTTAAATAAGGCCATTAAATCACAAGACTATCCAGAAGCTGTTATTCTTCATTCTGACCAAGGAAGC
CAGTATACGAGTCTAGAGTATGAAGAGTTGCTTAAGTATTATGGGATGACTCACTCTTTCAGTCGAAGGGGATACCCTTATCATAATGCCAGTCTTGAAT
CTTGGCATGGACATTTAAAAAGAGAGTGGGTGTACCAATTTAAATATAAGAACTTTGAAGAAGCCTATCAGAGTATTTTCTGGTACATCGAAGCCTTTTA
TAATTCAAAACGAATCCATCAAAGTTTAGGGTATCTTACACCTAATCAATTTGAAAAGGTAAGTGCTTAAAATAAATAGATTAAAATTCTACGTTTGTTA
CTCTAAAAACTTGACTTAACGTCA
GCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTA
ATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATT
CGCCGAGAAAAAGAAGTGAGTGCTGCGGATATGGCTCAAACCATACAAACTTTAGCACTCAATGTCAGACTAAGCTGTCAACTCCTTGATGTTCCTGAAT
CAAGTTATTATGAACGGATTAACCGACACCCATCTAAAACTCAATTAAGGAGACAATACCTGTCACTCAAAATTTCTCAACTCTTCAATGCTAACCGAGG
AATCTATGGTGCTCCTAAAATTCATCATCTTCTACTTAAACAAGGGGAAAAAGTCGGGTTAAAACTGGTACAGAAGCTAATGAAGCAACTTCAACTCAAG
TCTGTAGTCATTAAGAAATTTAAGCCTGGATACTCACTAAGTGATCACATCAATCGAAAAAATCTCATACAGACTGAACCTACAAAGAAAAATAAGGTTT
GGTCAACCGACATTACTTATATTCCTACTCAACAAGGATGGGCTTATCTCTCAACCATTATGGATCGTTATACTAAAAAAGTCATTGCTTGGGATTTGGG
CAAGCGAATGACTGTAGAATTAGTGCAAAGAACTTTAAATAAGGCCATTAAATCACAAGACTATCCAGAAGCTGTTATTCTTCATTCTGACCAAGGAAGC
CAGTATACGAGTCTAGAGTATGAAGAGTTGCTTAAGTATTATGGGATGACTCACTCTTTCAGTCGAAGGGGATACCCTTATCATAATGCCAGTCTTGAAT
CTTGGCATGGACATTTAAAAAGAGAGTGGGTGTACCAATTTAAATATAAGAACTTTGAAGAAGCCTATCAGAGTATTTTCTGGTACATCGAAGCCTTTTA
TAATTCAAAACGAATCCATCAAAGTTTAGGGTATCTTACACCTAATCAATTTGAAAAGGTAAGTGCTTAAAATAAATAGATTAAAATTCTACGTTTGTTA
CTCTAAAAACTTGACTTAACGTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
261 bp | 86 aa | 59 | 319 | + | No |
Description : First part of the transposase
ORF sequence :
MQKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLELKRQLAKVKEERDILKKVLTIFAEKKK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
909 bp | 302 aa | 262 | 1170 | + | No |
Description : Second part of the transposase
ORF sequence :
GRTRHLKKSIDHIRREKEVSAADMAQTIQTLALNVRLSCQLLDVPESSYYERINRHPSKTQLRRQYLSLKISQLFNANRGIYGAPKIHHLLLKQGEKVGL
KLVQKLMKQLQLKSVVIKKFKPGYSLSDHINRKNLIQTEPTKKNKVWSTDITYIPTQQGWAYLSTIMDRYTKKVIAWDLGKRMTVELVQRTLNKAIKSQD
YPEAVILHSDQGSQYTSLEYEELLKYYGMTHSFSRRGYPYHNASLESWHGHLKREWVYQFKYKNFEEAYQSIFWYIEAFYNSKRIHQSLGYLTPNQFEKV
SA
KLVQKLMKQLQLKSVVIKKFKPGYSLSDHINRKNLIQTEPTKKNKVWSTDITYIPTQQGWAYLSTIMDRYTKKVIAWDLGKRMTVELVQRTLNKAIKSQD
YPEAVILHSDQGSQYTSLEYEELLKYYGMTHSFSRRGYPYHNASLESWHGHLKREWVYQFKYKNFEEAYQSIFWYIEAFYNSKRIHQSLGYLTPNQFEKV
SA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1112 bp | 370 aa | 59 | 1170 | + | Yes |
Chemistry : DDE
ORF sequence :
MQKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLELKRQLAKVKEERDILKKSIDHIRREKEVSAADMAQTIQTLA
LNVRLSCQLLDVPESSYYERINRHPSKTQLRRQYLSLKISQLFNANRGIYGAPKIHHLLLKQGEKVGLKLVQKLMKQLQLKSVVIKKFKPGYSLSDHINR
KNLIQTEPTKKNKVWSTDITYIPTQQGWAYLSTIMDRYTKKVIAWDLGKRMTVELVQRTLNKAIKSQDYPEAVILHSDQGSQYTSLEYEELLKYYGMTHS
FSRRGYPYHNASLESWHGHLKREWVYQFKYKNFEEAYQSIFWYIEAFYNSKRIHQSLGYLTPNQFEKVSA
LNVRLSCQLLDVPESSYYERINRHPSKTQLRRQYLSLKISQLFNANRGIYGAPKIHHLLLKQGEKVGLKLVQKLMKQLQLKSVVIKKFKPGYSLSDHINR
KNLIQTEPTKKNKVWSTDITYIPTQQGWAYLSTIMDRYTKKVIAWDLGKRMTVELVQRTLNKAIKSQDYPEAVILHSDQGSQYTSLEYEELLKYYGMTHS
FSRRGYPYHNASLESWHGHLKREWVYQFKYKNFEEAYQSIFWYIEAFYNSKRIHQSLGYLTPNQFEKVSA
Blast result :
Comments
References