IS882
- Family Tn3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005241 | ND | Ralstonia eutropha | Ralstonia eutropha plasmid pHG1 |
DNA section
IS Length : 3363 bp
Ends
IR Length : 32/35
IRL : GGGGTAATCGTCCTTTTCTTGCAGATTGATACGGTTATCAATCAGCCCAG
IRR : GGGGTAATCGTCCTTTTGCAGCAGATTGATACGGTCAGGCTTAAAAAGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGGGTAATCGTCCTTTTCTTGCAGATTGATACGGTTATCAATCAGCCCAGAGTCCCTTGTTGGCGTGGCGTTGCAGCCCATTCGTTGACCTTATTGCGGC
CATCCGAGCACTTGTCGTACAGTTTTGACCCGAACGACACCCCGAAAAGTGTAGATGTCGGCATTTGCGTATCGCTACGTTGGCAGGGAAGAGTTGCCTG
CCCGCTTGACAGAATTTGACCTACGGCAGTTTTTTCAGCTCACCAGTGCTGACATCGCGGCAATACGGGAGCGGTTTCGGGCCGACAGATACGCCGCGGT
CGGCCTACAACTCGTTTGCCTCCGGGCCTTCGGTCGGCCGTTGGACCGGTTTGCTGCCGTTCCGCGAAATCTCCTTCAGTACGTGTGCGAAACTTTTTCC
GTGCCGCTGTTGTCGATTGCCAGTCTGAAGACGCTGTACCAACGACGCCCGACGTTGTACGAGCATCAGCAATGGGTCAAGGAGCACCTTGGCATCAAGC
CGTTCGATGACACCAGCCAGGCCGCTTTGCTGGAAATGCTCCGCGTGCAAGCTGCCGCAGCGGCAGACGTGGATGAGCTTGTCACCACCGCTCAGCGATG
GCTCTACGATCGCTGCCGCCTCATTCCCGGCCAGCGCCAGATCACCGACATGGCACGGCATGCATTTTCCGCCTACGAGGCGCAAATGCTCGCAGCGGTT
AACCGCGCAGTGCCGGCGGCCACGCTGCAGCACTGCATGGAATCCGTCCGCAGTCCACGGGCTGACGGCTCTGCAACGCACCTCGAGTGGATCAAGGCGC
CGTCCAGGCGCAACGGCCCCAAGAACCTCGCTGAAACGCTGGACAAGATCCGCTACCTGAAGTCCCTCGCTGTGCACGAGTGGAATCTGGATGACATCGC
TTTGCCCAAACTGCGTGCCTATGCGCAGAAGGTGCAAGCAAGGCGTCCGGCCAAGACCAAAGCACTGAAGGAGAGCACCCAGGCGCTTGAACTGGTGTGC
TTTCTACGGATGAGTTTGCTGGAACTCACCGATATCGCGATGCACCAGACTAGCCGACGCAGCCAGGATCTGTTCCGACGCGCGGCCAGCACGGCGCAGT
CGACGCACACCCGCTCCGCCGTGGAAGACAGGCAGCAGGCGCTCAAGGCCAAGGCCGTCCTGCAAGACAAGAGCAAGTCGACCGAGCAGCGAGTGGATGA
AGCCCTGAAGCACCTTGCCGTCGTCACCGACGCGGCGCATTCGAGCTTTGCGTCACACGTGCGCGCGGCGCTGACCGGTGACCATCAGCGGATTCACGCT
CTGCTGTCGGGCCTGGAAGGCCTGGAATTCGGCGGCAGGGAGGACGATCCCGGCTTTGCGAACCTCAAGGCATGGCGCGACCTGCAGACAAGGAAGCTCA
ATGCTCTGCCAGAAGACTTTACCGAAAGCGGCGTTGGCACGGCGTGGCATGACCTCGTCCATGATCCTGACCCAAAGCGCGGCTATCAGGCCTTCTCTGC
CTGCACGATGATGTCGCTACGAAATAGCCTGCGTCGGGGCAGCGTATGGATTGACCACTCGATGCGCTTTCGTGATCGCGACCAAATGCTCATCCCTGCC
AAGGAGTGGGAGCGCGACCGTGTCAAGTATCTCGGGCTATTGGGCCTGCCAGCCGCGGCTGATACCTACATCGAACAGCTACTGGATACGCTTCGTGCTG
GCGTGGCTGCTGTGGCCGAGGCCACCGCTAACGGCAAGATCGAAATAGGAGACGATGGCATGCTTCACCTGCCGGCGATTGTGCCGCTGGAGCAGGACGA
TGAACCGCGCCGCACACGCGACTTGATCTACAAGACAATCGGCGATGTGCAATTGCCGGACCTATTGCTGGAGGTCGACGCCTCGACCAATTTCAGCGAG
GTGCTGCTCGGGCACCGGGCGAAGTCCGTGCCCGAACTGCTGTCGACCTACGCGGCGTTGCTCGCCCATGGCACCGAGATCGATGCCAAGGGCATTGCTG
CGATGATTCCCGGCATCGACACCGCCCAGGTGTCACTTGCCATGCGAGGGCTGGAGACCCATGGCCGTTTGCGCCGGGCCAACGAGGTGGTGGCTGAATT
TCAAGGAAAGATCCCATTAGCCACGAACTGGGGCACCGGGCAGAAGGCATCGGCCGACATGATGTCGCTGGACGTTTCACGACATCTGTGGATCGCTCGT
GTTGATCCACGTCGACGCACCTACGCGACCGGCATCTACACCCACGTGCTCGATAAGTGGGGCATCGTCTATGACCAACCGATTGTCTTGAACGAGCGTC
AGGCTGGGGTGGCCATCGAGGGCGTAGAGCAGCACAACCGCTGCGAGGACCGTATCCGCCTGTCGTTACTGGCAGTGGACACGCACGGCTACACGAACGC
CGCGATGGCCTGGGCAAAGGGCTTGAGTTTCGATCTATGCCCGCGGCTGCGCGATCTGTCGGAGCGCAAACTGTATCTGCCTGCAGAGTTTAAAGTGCCA
GAAGGGATCGAGCGTGTCACCACGAAGCGCTTGTCCTTGAGAGCCATACGCCTGGGTTGGGACGATTTCCTACGGGTGCTGGCATCGATCCGTATCGGCC
GCATTAGCGCTGAGCTCGCCATGCAACGGTTGGGCAGCGCTGCCCGGACCAACAGGGCACACAAAGCTGCCGAGCATCTCGGCCGGCTGTTGCGTAGCAT
CTTCCTGTGCGACTACGTGACCATTGAAGACTTCCGCCGCGAAATCCATACGTTGCTCAGCCGAGGGGAGTCGGTGCACCAGTTGCAGCGCGCGATCCAT
GCTGGCCGGGTGCCACACGAACGCGGCCGGCGAGGCGATGAGATGACGGCGATCTCGGGGGCGCACGCGCTTCTGACCAACATCGTTCTGGCGTGGAATA
CCCACCGCATGAACGATGTCGTCGAGCGACTTCGCAAGGGCGGCACGAACATCGAGGACGCTTGGCTGCGCCGCATGGGGCCGGGGCATTCCGGGCACAT
CAACTTCCGGGGGATCCTCAGCTTCGGTGTCGAGCGCTACATTGACGCGCTGATCCGAGGCAGTGGCGCAACAACCCGACGGGCTATGGCATAACTGCCA
TCGAACGCCGCAGAGCAAAATCTGCCACAGATTGGCACACCGCAGTGGCTCGAGGCCGAAATACGGCAGTACCTTCGCAGCGGCAGCTACGACAGCAGCT
TCGCAGGCCGGCCAGGCATACTGGCGAGACAGTGCCTGCCAACCGCGTACCAATCCGCAAAGAAAGGACGGTGCAGCGCGAAACGAAGAACCGCTAAGTC
ATTGTTCTAGAACGTCTTTTTAAGCCTGACCGTATCAATCTGCTGCAAAAGGACGATTACCCC
CATCCGAGCACTTGTCGTACAGTTTTGACCCGAACGACACCCCGAAAAGTGTAGATGTCGGCATTTGCGTATCGCTACGTTGGCAGGGAAGAGTTGCCTG
CCCGCTTGACAGAATTTGACCTACGGCAGTTTTTTCAGCTCACCAGTGCTGACATCGCGGCAATACGGGAGCGGTTTCGGGCCGACAGATACGCCGCGGT
CGGCCTACAACTCGTTTGCCTCCGGGCCTTCGGTCGGCCGTTGGACCGGTTTGCTGCCGTTCCGCGAAATCTCCTTCAGTACGTGTGCGAAACTTTTTCC
GTGCCGCTGTTGTCGATTGCCAGTCTGAAGACGCTGTACCAACGACGCCCGACGTTGTACGAGCATCAGCAATGGGTCAAGGAGCACCTTGGCATCAAGC
CGTTCGATGACACCAGCCAGGCCGCTTTGCTGGAAATGCTCCGCGTGCAAGCTGCCGCAGCGGCAGACGTGGATGAGCTTGTCACCACCGCTCAGCGATG
GCTCTACGATCGCTGCCGCCTCATTCCCGGCCAGCGCCAGATCACCGACATGGCACGGCATGCATTTTCCGCCTACGAGGCGCAAATGCTCGCAGCGGTT
AACCGCGCAGTGCCGGCGGCCACGCTGCAGCACTGCATGGAATCCGTCCGCAGTCCACGGGCTGACGGCTCTGCAACGCACCTCGAGTGGATCAAGGCGC
CGTCCAGGCGCAACGGCCCCAAGAACCTCGCTGAAACGCTGGACAAGATCCGCTACCTGAAGTCCCTCGCTGTGCACGAGTGGAATCTGGATGACATCGC
TTTGCCCAAACTGCGTGCCTATGCGCAGAAGGTGCAAGCAAGGCGTCCGGCCAAGACCAAAGCACTGAAGGAGAGCACCCAGGCGCTTGAACTGGTGTGC
TTTCTACGGATGAGTTTGCTGGAACTCACCGATATCGCGATGCACCAGACTAGCCGACGCAGCCAGGATCTGTTCCGACGCGCGGCCAGCACGGCGCAGT
CGACGCACACCCGCTCCGCCGTGGAAGACAGGCAGCAGGCGCTCAAGGCCAAGGCCGTCCTGCAAGACAAGAGCAAGTCGACCGAGCAGCGAGTGGATGA
AGCCCTGAAGCACCTTGCCGTCGTCACCGACGCGGCGCATTCGAGCTTTGCGTCACACGTGCGCGCGGCGCTGACCGGTGACCATCAGCGGATTCACGCT
CTGCTGTCGGGCCTGGAAGGCCTGGAATTCGGCGGCAGGGAGGACGATCCCGGCTTTGCGAACCTCAAGGCATGGCGCGACCTGCAGACAAGGAAGCTCA
ATGCTCTGCCAGAAGACTTTACCGAAAGCGGCGTTGGCACGGCGTGGCATGACCTCGTCCATGATCCTGACCCAAAGCGCGGCTATCAGGCCTTCTCTGC
CTGCACGATGATGTCGCTACGAAATAGCCTGCGTCGGGGCAGCGTATGGATTGACCACTCGATGCGCTTTCGTGATCGCGACCAAATGCTCATCCCTGCC
AAGGAGTGGGAGCGCGACCGTGTCAAGTATCTCGGGCTATTGGGCCTGCCAGCCGCGGCTGATACCTACATCGAACAGCTACTGGATACGCTTCGTGCTG
GCGTGGCTGCTGTGGCCGAGGCCACCGCTAACGGCAAGATCGAAATAGGAGACGATGGCATGCTTCACCTGCCGGCGATTGTGCCGCTGGAGCAGGACGA
TGAACCGCGCCGCACACGCGACTTGATCTACAAGACAATCGGCGATGTGCAATTGCCGGACCTATTGCTGGAGGTCGACGCCTCGACCAATTTCAGCGAG
GTGCTGCTCGGGCACCGGGCGAAGTCCGTGCCCGAACTGCTGTCGACCTACGCGGCGTTGCTCGCCCATGGCACCGAGATCGATGCCAAGGGCATTGCTG
CGATGATTCCCGGCATCGACACCGCCCAGGTGTCACTTGCCATGCGAGGGCTGGAGACCCATGGCCGTTTGCGCCGGGCCAACGAGGTGGTGGCTGAATT
TCAAGGAAAGATCCCATTAGCCACGAACTGGGGCACCGGGCAGAAGGCATCGGCCGACATGATGTCGCTGGACGTTTCACGACATCTGTGGATCGCTCGT
GTTGATCCACGTCGACGCACCTACGCGACCGGCATCTACACCCACGTGCTCGATAAGTGGGGCATCGTCTATGACCAACCGATTGTCTTGAACGAGCGTC
AGGCTGGGGTGGCCATCGAGGGCGTAGAGCAGCACAACCGCTGCGAGGACCGTATCCGCCTGTCGTTACTGGCAGTGGACACGCACGGCTACACGAACGC
CGCGATGGCCTGGGCAAAGGGCTTGAGTTTCGATCTATGCCCGCGGCTGCGCGATCTGTCGGAGCGCAAACTGTATCTGCCTGCAGAGTTTAAAGTGCCA
GAAGGGATCGAGCGTGTCACCACGAAGCGCTTGTCCTTGAGAGCCATACGCCTGGGTTGGGACGATTTCCTACGGGTGCTGGCATCGATCCGTATCGGCC
GCATTAGCGCTGAGCTCGCCATGCAACGGTTGGGCAGCGCTGCCCGGACCAACAGGGCACACAAAGCTGCCGAGCATCTCGGCCGGCTGTTGCGTAGCAT
CTTCCTGTGCGACTACGTGACCATTGAAGACTTCCGCCGCGAAATCCATACGTTGCTCAGCCGAGGGGAGTCGGTGCACCAGTTGCAGCGCGCGATCCAT
GCTGGCCGGGTGCCACACGAACGCGGCCGGCGAGGCGATGAGATGACGGCGATCTCGGGGGCGCACGCGCTTCTGACCAACATCGTTCTGGCGTGGAATA
CCCACCGCATGAACGATGTCGTCGAGCGACTTCGCAAGGGCGGCACGAACATCGAGGACGCTTGGCTGCGCCGCATGGGGCCGGGGCATTCCGGGCACAT
CAACTTCCGGGGGATCCTCAGCTTCGGTGTCGAGCGCTACATTGACGCGCTGATCCGAGGCAGTGGCGCAACAACCCGACGGGCTATGGCATAACTGCCA
TCGAACGCCGCAGAGCAAAATCTGCCACAGATTGGCACACCGCAGTGGCTCGAGGCCGAAATACGGCAGTACCTTCGCAGCGGCAGCTACGACAGCAGCT
TCGCAGGCCGGCCAGGCATACTGGCGAGACAGTGCCTGCCAACCGCGTACCAATCCGCAAAGAAAGGACGGTGCAGCGCGAAACGAAGAACCGCTAAGTC
ATTGTTCTAGAACGTCTTTTTAAGCCTGACCGTATCAATCTGCTGCAAAAGGACGATTACCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
2940 bp | 979 aa | 155 | 3094 | + | No |
Chemistry : DDE
ORF sequence :
MSAFAYRYVGREELPARLTEFDLRQFFQLTSADIAAIRERFRADRYAAVGLQLVCLRAFGRPLDRFAAVPRNLLQYVCETFSVPLLSIASLKTLYQRRPT
LYEHQQWVKEHLGIKPFDDTSQAALLEMLRVQAAAAADVDELVTTAQRWLYDRCRLIPGQRQITDMARHAFSAYEAQMLAAVNRAVPAATLQHCMESVRS
PRADGSATHLEWIKAPSRRNGPKNLAETLDKIRYLKSLAVHEWNLDDIALPKLRAYAQKVQARRPAKTKALKESTQALELVCFLRMSLLELTDIAMHQTS
RRSQDLFRRAASTAQSTHTRSAVEDRQQALKAKAVLQDKSKSTEQRVDEALKHLAVVTDAAHSSFASHVRAALTGDHQRIHALLSGLEGLEFGGREDDPG
FANLKAWRDLQTRKLNALPEDFTESGVGTAWHDLVHDPDPKRGYQAFSACTMMSLRNSLRRGSVWIDHSMRFRDRDQMLIPAKEWERDRVKYLGLLGLPA
AADTYIEQLLDTLRAGVAAVAEATANGKIEIGDDGMLHLPAIVPLEQDDEPRRTRDLIYKTIGDVQLPDLLLEVDASTNFSEVLLGHRAKSVPELLSTYA
ALLAHGTEIDAKGIAAMIPGIDTAQVSLAMRGLETHGRLRRANEVVAEFQGKIPLATNWGTGQKASADMMSLDVSRHLWIARVDPRRRTYATGIYTHVLD
KWGIVYDQPIVLNERQAGVAIEGVEQHNRCEDRIRLSLLAVDTHGYTNAAMAWAKGLSFDLCPRLRDLSERKLYLPAEFKVPEGIERVTTKRLSLRAIRL
GWDDFLRVLASIRIGRISAELAMQRLGSAARTNRAHKAAEHLGRLLRSIFLCDYVTIEDFRREIHTLLSRGESVHQLQRAIHAGRVPHERGRRGDEMTAI
SGAHALLTNIVLAWNTHRMNDVVERLRKGGTNIEDAWLRRMGPGHSGHINFRGILSFGVERYIDALIRGSGATTRRAMA
LYEHQQWVKEHLGIKPFDDTSQAALLEMLRVQAAAAADVDELVTTAQRWLYDRCRLIPGQRQITDMARHAFSAYEAQMLAAVNRAVPAATLQHCMESVRS
PRADGSATHLEWIKAPSRRNGPKNLAETLDKIRYLKSLAVHEWNLDDIALPKLRAYAQKVQARRPAKTKALKESTQALELVCFLRMSLLELTDIAMHQTS
RRSQDLFRRAASTAQSTHTRSAVEDRQQALKAKAVLQDKSKSTEQRVDEALKHLAVVTDAAHSSFASHVRAALTGDHQRIHALLSGLEGLEFGGREDDPG
FANLKAWRDLQTRKLNALPEDFTESGVGTAWHDLVHDPDPKRGYQAFSACTMMSLRNSLRRGSVWIDHSMRFRDRDQMLIPAKEWERDRVKYLGLLGLPA
AADTYIEQLLDTLRAGVAAVAEATANGKIEIGDDGMLHLPAIVPLEQDDEPRRTRDLIYKTIGDVQLPDLLLEVDASTNFSEVLLGHRAKSVPELLSTYA
ALLAHGTEIDAKGIAAMIPGIDTAQVSLAMRGLETHGRLRRANEVVAEFQGKIPLATNWGTGQKASADMMSLDVSRHLWIARVDPRRRTYATGIYTHVLD
KWGIVYDQPIVLNERQAGVAIEGVEQHNRCEDRIRLSLLAVDTHGYTNAAMAWAKGLSFDLCPRLRDLSERKLYLPAEFKVPEGIERVTTKRLSLRAIRL
GWDDFLRVLASIRIGRISAELAMQRLGSAARTNRAHKAAEHLGRLLRSIFLCDYVTIEDFRREIHTLLSRGESVHQLQRAIHAGRVPHERGRRGDEMTAI
SGAHALLTNIVLAWNTHRMNDVVERLRKGGTNIEDAWLRRMGPGHSGHINFRGILSFGVERYIDALIRGSGATTRRAMA
Blast result :
Comments
IS882 is 54% aa similar to IS1071.
There is only one copy in the pHG1 sequence at coordinates : 139610..142972.
There is only one copy in the pHG1 sequence at coordinates : 139610..142972.
References
1] Schwartz,E., Henne,A., Cramm,R., Eitinger,T., Friedrich,B. and Gottschalk,G. (2003) J. Mol. Biol. 332 (2), 369-383