IS882

  • Family Tn3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005241 ND Ralstonia eutropha
Ralstonia eutropha plasmid pHG1
DNA section
IS Length : 3363 bp

Ends


IR Length : 32/35

IRL : GGGGTAATCGTCCTTTTCTTGCAGATTGATACGGTTATCAATCAGCCCAG
IRR : GGGGTAATCGTCCTTTTGCAGCAGATTGATACGGTCAGGCTTAAAAAGAC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGGGTAATCGTCCTTTTCTTGCAGATTGATACGGTTATCAATCAGCCCAGAGTCCCTTGTTGGCGTGGCGTTGCAGCCCATTCGTTGACCTTATTGCGGC
CATCCGAGCACTTGTCGTACAGTTTTGACCCGAACGACACCCCGAAAAGTGTAGATGTCGGCATTTGCGTATCGCTACGTTGGCAGGGAAGAGTTGCCTG
CCCGCTTGACAGAATTTGACCTACGGCAGTTTTTTCAGCTCACCAGTGCTGACATCGCGGCAATACGGGAGCGGTTTCGGGCCGACAGATACGCCGCGGT
CGGCCTACAACTCGTTTGCCTCCGGGCCTTCGGTCGGCCGTTGGACCGGTTTGCTGCCGTTCCGCGAAATCTCCTTCAGTACGTGTGCGAAACTTTTTCC
GTGCCGCTGTTGTCGATTGCCAGTCTGAAGACGCTGTACCAACGACGCCCGACGTTGTACGAGCATCAGCAATGGGTCAAGGAGCACCTTGGCATCAAGC
CGTTCGATGACACCAGCCAGGCCGCTTTGCTGGAAATGCTCCGCGTGCAAGCTGCCGCAGCGGCAGACGTGGATGAGCTTGTCACCACCGCTCAGCGATG
GCTCTACGATCGCTGCCGCCTCATTCCCGGCCAGCGCCAGATCACCGACATGGCACGGCATGCATTTTCCGCCTACGAGGCGCAAATGCTCGCAGCGGTT
AACCGCGCAGTGCCGGCGGCCACGCTGCAGCACTGCATGGAATCCGTCCGCAGTCCACGGGCTGACGGCTCTGCAACGCACCTCGAGTGGATCAAGGCGC
CGTCCAGGCGCAACGGCCCCAAGAACCTCGCTGAAACGCTGGACAAGATCCGCTACCTGAAGTCCCTCGCTGTGCACGAGTGGAATCTGGATGACATCGC
TTTGCCCAAACTGCGTGCCTATGCGCAGAAGGTGCAAGCAAGGCGTCCGGCCAAGACCAAAGCACTGAAGGAGAGCACCCAGGCGCTTGAACTGGTGTGC
TTTCTACGGATGAGTTTGCTGGAACTCACCGATATCGCGATGCACCAGACTAGCCGACGCAGCCAGGATCTGTTCCGACGCGCGGCCAGCACGGCGCAGT
CGACGCACACCCGCTCCGCCGTGGAAGACAGGCAGCAGGCGCTCAAGGCCAAGGCCGTCCTGCAAGACAAGAGCAAGTCGACCGAGCAGCGAGTGGATGA
AGCCCTGAAGCACCTTGCCGTCGTCACCGACGCGGCGCATTCGAGCTTTGCGTCACACGTGCGCGCGGCGCTGACCGGTGACCATCAGCGGATTCACGCT
CTGCTGTCGGGCCTGGAAGGCCTGGAATTCGGCGGCAGGGAGGACGATCCCGGCTTTGCGAACCTCAAGGCATGGCGCGACCTGCAGACAAGGAAGCTCA
ATGCTCTGCCAGAAGACTTTACCGAAAGCGGCGTTGGCACGGCGTGGCATGACCTCGTCCATGATCCTGACCCAAAGCGCGGCTATCAGGCCTTCTCTGC
CTGCACGATGATGTCGCTACGAAATAGCCTGCGTCGGGGCAGCGTATGGATTGACCACTCGATGCGCTTTCGTGATCGCGACCAAATGCTCATCCCTGCC
AAGGAGTGGGAGCGCGACCGTGTCAAGTATCTCGGGCTATTGGGCCTGCCAGCCGCGGCTGATACCTACATCGAACAGCTACTGGATACGCTTCGTGCTG
GCGTGGCTGCTGTGGCCGAGGCCACCGCTAACGGCAAGATCGAAATAGGAGACGATGGCATGCTTCACCTGCCGGCGATTGTGCCGCTGGAGCAGGACGA
TGAACCGCGCCGCACACGCGACTTGATCTACAAGACAATCGGCGATGTGCAATTGCCGGACCTATTGCTGGAGGTCGACGCCTCGACCAATTTCAGCGAG
GTGCTGCTCGGGCACCGGGCGAAGTCCGTGCCCGAACTGCTGTCGACCTACGCGGCGTTGCTCGCCCATGGCACCGAGATCGATGCCAAGGGCATTGCTG
CGATGATTCCCGGCATCGACACCGCCCAGGTGTCACTTGCCATGCGAGGGCTGGAGACCCATGGCCGTTTGCGCCGGGCCAACGAGGTGGTGGCTGAATT
TCAAGGAAAGATCCCATTAGCCACGAACTGGGGCACCGGGCAGAAGGCATCGGCCGACATGATGTCGCTGGACGTTTCACGACATCTGTGGATCGCTCGT
GTTGATCCACGTCGACGCACCTACGCGACCGGCATCTACACCCACGTGCTCGATAAGTGGGGCATCGTCTATGACCAACCGATTGTCTTGAACGAGCGTC
AGGCTGGGGTGGCCATCGAGGGCGTAGAGCAGCACAACCGCTGCGAGGACCGTATCCGCCTGTCGTTACTGGCAGTGGACACGCACGGCTACACGAACGC
CGCGATGGCCTGGGCAAAGGGCTTGAGTTTCGATCTATGCCCGCGGCTGCGCGATCTGTCGGAGCGCAAACTGTATCTGCCTGCAGAGTTTAAAGTGCCA
GAAGGGATCGAGCGTGTCACCACGAAGCGCTTGTCCTTGAGAGCCATACGCCTGGGTTGGGACGATTTCCTACGGGTGCTGGCATCGATCCGTATCGGCC
GCATTAGCGCTGAGCTCGCCATGCAACGGTTGGGCAGCGCTGCCCGGACCAACAGGGCACACAAAGCTGCCGAGCATCTCGGCCGGCTGTTGCGTAGCAT
CTTCCTGTGCGACTACGTGACCATTGAAGACTTCCGCCGCGAAATCCATACGTTGCTCAGCCGAGGGGAGTCGGTGCACCAGTTGCAGCGCGCGATCCAT
GCTGGCCGGGTGCCACACGAACGCGGCCGGCGAGGCGATGAGATGACGGCGATCTCGGGGGCGCACGCGCTTCTGACCAACATCGTTCTGGCGTGGAATA
CCCACCGCATGAACGATGTCGTCGAGCGACTTCGCAAGGGCGGCACGAACATCGAGGACGCTTGGCTGCGCCGCATGGGGCCGGGGCATTCCGGGCACAT
CAACTTCCGGGGGATCCTCAGCTTCGGTGTCGAGCGCTACATTGACGCGCTGATCCGAGGCAGTGGCGCAACAACCCGACGGGCTATGGCATAACTGCCA
TCGAACGCCGCAGAGCAAAATCTGCCACAGATTGGCACACCGCAGTGGCTCGAGGCCGAAATACGGCAGTACCTTCGCAGCGGCAGCTACGACAGCAGCT
TCGCAGGCCGGCCAGGCATACTGGCGAGACAGTGCCTGCCAACCGCGTACCAATCCGCAAAGAAAGGACGGTGCAGCGCGAAACGAAGAACCGCTAAGTC
ATTGTTCTAGAACGTCTTTTTAAGCCTGACCGTATCAATCTGCTGCAAAAGGACGATTACCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
2940 bp979 aa1553094+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSAFAYRYVGREELPARLTEFDLRQFFQLTSADIAAIRERFRADRYAAVGLQLVCLRAFGRPLDRFAAVPRNLLQYVCETFSVPLLSIASLKTLYQRRPT
LYEHQQWVKEHLGIKPFDDTSQAALLEMLRVQAAAAADVDELVTTAQRWLYDRCRLIPGQRQITDMARHAFSAYEAQMLAAVNRAVPAATLQHCMESVRS
PRADGSATHLEWIKAPSRRNGPKNLAETLDKIRYLKSLAVHEWNLDDIALPKLRAYAQKVQARRPAKTKALKESTQALELVCFLRMSLLELTDIAMHQTS
RRSQDLFRRAASTAQSTHTRSAVEDRQQALKAKAVLQDKSKSTEQRVDEALKHLAVVTDAAHSSFASHVRAALTGDHQRIHALLSGLEGLEFGGREDDPG
FANLKAWRDLQTRKLNALPEDFTESGVGTAWHDLVHDPDPKRGYQAFSACTMMSLRNSLRRGSVWIDHSMRFRDRDQMLIPAKEWERDRVKYLGLLGLPA
AADTYIEQLLDTLRAGVAAVAEATANGKIEIGDDGMLHLPAIVPLEQDDEPRRTRDLIYKTIGDVQLPDLLLEVDASTNFSEVLLGHRAKSVPELLSTYA
ALLAHGTEIDAKGIAAMIPGIDTAQVSLAMRGLETHGRLRRANEVVAEFQGKIPLATNWGTGQKASADMMSLDVSRHLWIARVDPRRRTYATGIYTHVLD
KWGIVYDQPIVLNERQAGVAIEGVEQHNRCEDRIRLSLLAVDTHGYTNAAMAWAKGLSFDLCPRLRDLSERKLYLPAEFKVPEGIERVTTKRLSLRAIRL
GWDDFLRVLASIRIGRISAELAMQRLGSAARTNRAHKAAEHLGRLLRSIFLCDYVTIEDFRREIHTLLSRGESVHQLQRAIHAGRVPHERGRRGDEMTAI
SGAHALLTNIVLAWNTHRMNDVVERLRKGGTNIEDAWLRRMGPGHSGHINFRGILSFGVERYIDALIRGSGATTRRAMA

 

Blast result :
Comments
IS882 is 54% aa similar to IS1071.
There is only one copy in the pHG1 sequence at coordinates : 139610..142972.
References
1] Schwartz,E., Henne,A., Cramm,R., Eitinger,T., Friedrich,B. and Gottschalk,G. (2003) J. Mol. Biol. 332 (2), 369-383