IS660
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002570 | ND | Bacillus halodurans | Bacillus halodurans C-125 |
DNA section
IS Length : 1963 bp
Ends
IR Length : 14/16
IRL : GGAGCTGTCTCAAAAGTCTATCTTTTGAGGCAGCTCCTTTGCTTATTCGT
IRR : GGGGCTGTCCCAAAAGCACCTTAAAACATAAAATCGGGAGAACCGTTTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGAGCTGTCTCAAAAGTCTATCTTTTGAGGCAGCTCCTTTGCTTATTCGTTCGAAATGGCGACTTGGCGGACGCTTTCCGCGGGCAACGCTCCAGCTTCC
TCGAGAACCCCACTCTCGGCGATCTTCCGCTGTTGCTTTTCCCGCAGGAGTCGCCGCCTGTCGCTCGTTTGACTCCCATTAACGCGCGAAAGAACATACA
AAAAAATCGCCCAATCGTTTAAAATGAAGGTACCACTACCAAAATTCAAACGAAAGAAGGCGATTTTTTTGCGTAACCAAACGGCTACTTATCAGCAGTA
TACCATGAATCAACTCGTGCTTCCTATGGATTTTTCCGATCTCATTCCAGAGAACCATGTAGCACGTGTGGTGAATGACATGGTCGAATCGTTGGATGAT
CAGCTATTTGACGAGGTATACAAAGGGGGCGGTCGTCCTGCATATCACCCGAAAATGATGACGAAAATCCTATTGTACGGGTACACGCAAAAGTGGTTTT
CGTGTCGTGCGATCGCCAAGGCTTTGACCGAACATCTTCCGATGATGTGGCTCGCCGCCAGACAGACACCCGACTTCCGGACGATTAATCGGTTTCGCTC
GGAACGATTGAAACCGTTGATGGATACATTGTTTTCGGCATTGACGCATCTTCTGATCAAGGAAGGCTACGTCGATGGATCATCGTACTTTCTGGATGGG
ACGAAAATCGAAGCGAACGCCAATAAGTATACATTTGTTTGGAAAAAGAGCGTCCAAAAATATGAAGAGAAGCTTCAACTTAAGATCGATGAAATGCTTC
AAGAAATCGAGAAGCAAGTGGAACTGGATCGCATCCAGATCCAACAGGAGACAAACGCAGAGGAAAAGCGTATCTCCAGTGAAGTGCTTCAAGCCGTCGC
CCGATCCGTGGAACAGGAACTCATCAAAAGAGACGAACAGATCAAAGAAACGGCAGACCATAAAGAGAAGCAAGCACAAAAACAAGCGCTCAAACCGCTC
CGAAAGATCTATCGGACACTCACGACCGACACCTTGCCTCGGCTTCGGAAGTATGAAACGTCTTTTCGCCTCTTGGGGGAGCGGAATAGCTATTCGAAAA
CCGATCCAGATGCCACCTTTATGCGGATGAAAGACGATCACATGAAGAATGGGCAGTTAAAAGCAGGCTACAACTGGCAGATTGGGACTCAGGATCAGTT
TATTCTTTTTTATACGGTCCATCCGAATCCTACTGACACCCGCTGCCTTCTTCCCCACGTGGAGGCTCTCAAAGAGAGCGGACTTCCTCTTCCGAAGACA
TTGATTGCCGATGCGGGCTATGGGAGTGAATCTAATTATGTGGCGATGGCAGACGAACTGTTTGAGACGCTCATTCCCTCCCATACATTCCGCCAAGAAC
AGAAACGTTCCTTTGCGAAGAAACGCTTTCATCCCTACAACTGGAGGTGTGATGAGACGGACGATGTGTACTGGTGCCCAAATCAGCGGAAAGTCTCTTT
TAAACGATACACCAAGCGGACCGATCCGTATGGGTATGCACGGGATTTTAAAGTCTATGAGTGTGAGTCATGTGAAGGATGTCCGTTTAAGCCGGAGTGT
ACGAAGGCCCGGGGAAATCGACAGGTACACTACAACCCGGTGTATGAGGAACTGAAAGCGAAGCAACATCAAAAACTGAAAAGCGAAGAAGGCCGAACGC
TCTACCAAAAAAGAAAAACGGATGTGGAGAGCGTATTTGGTCATGTTAAACAAAACCTCGGCTTCCGAAGGCTACATCTTCGTGGCAAGGAAAGCGTGCA
CATCGAGCTTGGGCTTGTGGCCCTTGCCCACAACCTAAGGAAACGAGCGACGGTGGATCGTCGCTCGAAGGAACCAAAGAACACAAATCAACACAAAAAT
CGGGAGAACCGCATCAAACGGTTCTCCCGATTTTATGTTTTAAGGTGCTTTTGGGACAGCCCC
TCGAGAACCCCACTCTCGGCGATCTTCCGCTGTTGCTTTTCCCGCAGGAGTCGCCGCCTGTCGCTCGTTTGACTCCCATTAACGCGCGAAAGAACATACA
AAAAAATCGCCCAATCGTTTAAAATGAAGGTACCACTACCAAAATTCAAACGAAAGAAGGCGATTTTTTTGCGTAACCAAACGGCTACTTATCAGCAGTA
TACCATGAATCAACTCGTGCTTCCTATGGATTTTTCCGATCTCATTCCAGAGAACCATGTAGCACGTGTGGTGAATGACATGGTCGAATCGTTGGATGAT
CAGCTATTTGACGAGGTATACAAAGGGGGCGGTCGTCCTGCATATCACCCGAAAATGATGACGAAAATCCTATTGTACGGGTACACGCAAAAGTGGTTTT
CGTGTCGTGCGATCGCCAAGGCTTTGACCGAACATCTTCCGATGATGTGGCTCGCCGCCAGACAGACACCCGACTTCCGGACGATTAATCGGTTTCGCTC
GGAACGATTGAAACCGTTGATGGATACATTGTTTTCGGCATTGACGCATCTTCTGATCAAGGAAGGCTACGTCGATGGATCATCGTACTTTCTGGATGGG
ACGAAAATCGAAGCGAACGCCAATAAGTATACATTTGTTTGGAAAAAGAGCGTCCAAAAATATGAAGAGAAGCTTCAACTTAAGATCGATGAAATGCTTC
AAGAAATCGAGAAGCAAGTGGAACTGGATCGCATCCAGATCCAACAGGAGACAAACGCAGAGGAAAAGCGTATCTCCAGTGAAGTGCTTCAAGCCGTCGC
CCGATCCGTGGAACAGGAACTCATCAAAAGAGACGAACAGATCAAAGAAACGGCAGACCATAAAGAGAAGCAAGCACAAAAACAAGCGCTCAAACCGCTC
CGAAAGATCTATCGGACACTCACGACCGACACCTTGCCTCGGCTTCGGAAGTATGAAACGTCTTTTCGCCTCTTGGGGGAGCGGAATAGCTATTCGAAAA
CCGATCCAGATGCCACCTTTATGCGGATGAAAGACGATCACATGAAGAATGGGCAGTTAAAAGCAGGCTACAACTGGCAGATTGGGACTCAGGATCAGTT
TATTCTTTTTTATACGGTCCATCCGAATCCTACTGACACCCGCTGCCTTCTTCCCCACGTGGAGGCTCTCAAAGAGAGCGGACTTCCTCTTCCGAAGACA
TTGATTGCCGATGCGGGCTATGGGAGTGAATCTAATTATGTGGCGATGGCAGACGAACTGTTTGAGACGCTCATTCCCTCCCATACATTCCGCCAAGAAC
AGAAACGTTCCTTTGCGAAGAAACGCTTTCATCCCTACAACTGGAGGTGTGATGAGACGGACGATGTGTACTGGTGCCCAAATCAGCGGAAAGTCTCTTT
TAAACGATACACCAAGCGGACCGATCCGTATGGGTATGCACGGGATTTTAAAGTCTATGAGTGTGAGTCATGTGAAGGATGTCCGTTTAAGCCGGAGTGT
ACGAAGGCCCGGGGAAATCGACAGGTACACTACAACCCGGTGTATGAGGAACTGAAAGCGAAGCAACATCAAAAACTGAAAAGCGAAGAAGGCCGAACGC
TCTACCAAAAAAGAAAAACGGATGTGGAGAGCGTATTTGGTCATGTTAAACAAAACCTCGGCTTCCGAAGGCTACATCTTCGTGGCAAGGAAAGCGTGCA
CATCGAGCTTGGGCTTGTGGCCCTTGCCCACAACCTAAGGAAACGAGCGACGGTGGATCGTCGCTCGAAGGAACCAAAGAACACAAATCAACACAAAAAT
CGGGAGAACCGCATCAAACGGTTCTCCCGATTTTATGTTTTAAGGTGCTTTTGGGACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1695 bp | 565 aa | 269 | 1963 | + | No |
Chemistry : DDE
ORF sequence :
MRNQTATYQQYTMNQLVLPMDFSDLIPENHVARVVNDMVESLDDQLFDEVYKGGGRPAYHPKMMTKILLYGYTQKWFSCRAIAKALTEHLPMMWLAARQT
PDFRTINRFRSERLKPLMDTLFSALTHLLIKEGYVDGSSYFLDGTKIEANANKYTFVWKKSVQKYEEKLQLKIDEMLQEIEKQVELDRIQIQQETNAEEK
RISSEVLQAVARSVEQELIKRDEQIKETADHKEKQAQKQALKPLRKIYRTLTTDTLPRLRKYETSFRLLGERNSYSKTDPDATFMRMKDDHMKNGQLKAG
YNWQIGTQDQFILFYTVHPNPTDTRCLLPHVEALKESGLPLPKTLIADAGYGSESNYVAMADELFETLIPSHTFRQEQKRSFAKKRFHPYNWRCDETDDV
YWCPNQRKVSFKRYTKRTDPYGYARDFKVYECESCEGCPFKPECTKARGNRQVHYNPVYEELKAKQHQKLKSEEGRTLYQKRKTDVESVFGHVKQNLGFR
RLHLRGKESVHIELGLVALAHNLRKRATVDRRSKEPKNTNQHKNRENRIKRFSRFYVLRCFWDSP
PDFRTINRFRSERLKPLMDTLFSALTHLLIKEGYVDGSSYFLDGTKIEANANKYTFVWKKSVQKYEEKLQLKIDEMLQEIEKQVELDRIQIQQETNAEEK
RISSEVLQAVARSVEQELIKRDEQIKETADHKEKQAQKQALKPLRKIYRTLTTDTLPRLRKYETSFRLLGERNSYSKTDPDATFMRMKDDHMKNGQLKAG
YNWQIGTQDQFILFYTVHPNPTDTRCLLPHVEALKESGLPLPKTLIADAGYGSESNYVAMADELFETLIPSHTFRQEQKRSFAKKRFHPYNWRCDETDDV
YWCPNQRKVSFKRYTKRTDPYGYARDFKVYECESCEGCPFKPECTKARGNRQVHYNPVYEELKAKQHQKLKSEEGRTLYQKRKTDVESVFGHVKQNLGFR
RLHLRGKESVHIELGLVALAHNLRKRATVDRRSKEPKNTNQHKNRENRIKRFSRFYVLRCFWDSP
Blast result :
Comments
There are 3 copies of IS660 on Bacillus halodurans chromosome. There are no STOP codon, the transposase use the first Stop codon after the end of the IRR.The transposase in the database is cut at the end of the IS.
References
1] Takami H, Han CG, Takaki Y, Ohtsubo E. (2001) J. Bacteriol. 183(14), 4345-56.