IS660

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002570 ND Bacillus halodurans
Bacillus halodurans C-125
DNA section
IS Length : 1963 bp

Ends


IR Length : 14/16

IRL : GGAGCTGTCTCAAAAGTCTATCTTTTGAGGCAGCTCCTTTGCTTATTCGT
IRR : GGGGCTGTCCCAAAAGCACCTTAAAACATAAAATCGGGAGAACCGTTTGA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGAGCTGTCTCAAAAGTCTATCTTTTGAGGCAGCTCCTTTGCTTATTCGTTCGAAATGGCGACTTGGCGGACGCTTTCCGCGGGCAACGCTCCAGCTTCC
TCGAGAACCCCACTCTCGGCGATCTTCCGCTGTTGCTTTTCCCGCAGGAGTCGCCGCCTGTCGCTCGTTTGACTCCCATTAACGCGCGAAAGAACATACA
AAAAAATCGCCCAATCGTTTAAAATGAAGGTACCACTACCAAAATTCAAACGAAAGAAGGCGATTTTTTTGCGTAACCAAACGGCTACTTATCAGCAGTA
TACCATGAATCAACTCGTGCTTCCTATGGATTTTTCCGATCTCATTCCAGAGAACCATGTAGCACGTGTGGTGAATGACATGGTCGAATCGTTGGATGAT
CAGCTATTTGACGAGGTATACAAAGGGGGCGGTCGTCCTGCATATCACCCGAAAATGATGACGAAAATCCTATTGTACGGGTACACGCAAAAGTGGTTTT
CGTGTCGTGCGATCGCCAAGGCTTTGACCGAACATCTTCCGATGATGTGGCTCGCCGCCAGACAGACACCCGACTTCCGGACGATTAATCGGTTTCGCTC
GGAACGATTGAAACCGTTGATGGATACATTGTTTTCGGCATTGACGCATCTTCTGATCAAGGAAGGCTACGTCGATGGATCATCGTACTTTCTGGATGGG
ACGAAAATCGAAGCGAACGCCAATAAGTATACATTTGTTTGGAAAAAGAGCGTCCAAAAATATGAAGAGAAGCTTCAACTTAAGATCGATGAAATGCTTC
AAGAAATCGAGAAGCAAGTGGAACTGGATCGCATCCAGATCCAACAGGAGACAAACGCAGAGGAAAAGCGTATCTCCAGTGAAGTGCTTCAAGCCGTCGC
CCGATCCGTGGAACAGGAACTCATCAAAAGAGACGAACAGATCAAAGAAACGGCAGACCATAAAGAGAAGCAAGCACAAAAACAAGCGCTCAAACCGCTC
CGAAAGATCTATCGGACACTCACGACCGACACCTTGCCTCGGCTTCGGAAGTATGAAACGTCTTTTCGCCTCTTGGGGGAGCGGAATAGCTATTCGAAAA
CCGATCCAGATGCCACCTTTATGCGGATGAAAGACGATCACATGAAGAATGGGCAGTTAAAAGCAGGCTACAACTGGCAGATTGGGACTCAGGATCAGTT
TATTCTTTTTTATACGGTCCATCCGAATCCTACTGACACCCGCTGCCTTCTTCCCCACGTGGAGGCTCTCAAAGAGAGCGGACTTCCTCTTCCGAAGACA
TTGATTGCCGATGCGGGCTATGGGAGTGAATCTAATTATGTGGCGATGGCAGACGAACTGTTTGAGACGCTCATTCCCTCCCATACATTCCGCCAAGAAC
AGAAACGTTCCTTTGCGAAGAAACGCTTTCATCCCTACAACTGGAGGTGTGATGAGACGGACGATGTGTACTGGTGCCCAAATCAGCGGAAAGTCTCTTT
TAAACGATACACCAAGCGGACCGATCCGTATGGGTATGCACGGGATTTTAAAGTCTATGAGTGTGAGTCATGTGAAGGATGTCCGTTTAAGCCGGAGTGT
ACGAAGGCCCGGGGAAATCGACAGGTACACTACAACCCGGTGTATGAGGAACTGAAAGCGAAGCAACATCAAAAACTGAAAAGCGAAGAAGGCCGAACGC
TCTACCAAAAAAGAAAAACGGATGTGGAGAGCGTATTTGGTCATGTTAAACAAAACCTCGGCTTCCGAAGGCTACATCTTCGTGGCAAGGAAAGCGTGCA
CATCGAGCTTGGGCTTGTGGCCCTTGCCCACAACCTAAGGAAACGAGCGACGGTGGATCGTCGCTCGAAGGAACCAAAGAACACAAATCAACACAAAAAT
CGGGAGAACCGCATCAAACGGTTCTCCCGATTTTATGTTTTAAGGTGCTTTTGGGACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1695 bp565 aa2691963+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRNQTATYQQYTMNQLVLPMDFSDLIPENHVARVVNDMVESLDDQLFDEVYKGGGRPAYHPKMMTKILLYGYTQKWFSCRAIAKALTEHLPMMWLAARQT
PDFRTINRFRSERLKPLMDTLFSALTHLLIKEGYVDGSSYFLDGTKIEANANKYTFVWKKSVQKYEEKLQLKIDEMLQEIEKQVELDRIQIQQETNAEEK
RISSEVLQAVARSVEQELIKRDEQIKETADHKEKQAQKQALKPLRKIYRTLTTDTLPRLRKYETSFRLLGERNSYSKTDPDATFMRMKDDHMKNGQLKAG
YNWQIGTQDQFILFYTVHPNPTDTRCLLPHVEALKESGLPLPKTLIADAGYGSESNYVAMADELFETLIPSHTFRQEQKRSFAKKRFHPYNWRCDETDDV
YWCPNQRKVSFKRYTKRTDPYGYARDFKVYECESCEGCPFKPECTKARGNRQVHYNPVYEELKAKQHQKLKSEEGRTLYQKRKTDVESVFGHVKQNLGFR
RLHLRGKESVHIELGLVALAHNLRKRATVDRRSKEPKNTNQHKNRENRIKRFSRFYVLRCFWDSP

 

Blast result :
Comments
There are 3 copies of IS660 on Bacillus halodurans chromosome. There are no STOP codon, the transposase use the first Stop codon after the end of the IRR.The transposase in the database is cut at the end of the IS.
References
1] Takami H, Han CG, Takaki Y, Ohtsubo E. (2001) J. Bacteriol. 183(14), 4345-56.