IS658
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002570 | ND | Bacillus halodurans | Bacillus halodurans C-125 |
DNA section
IS Length : 1058 bp
Ends
IR Length : 7/11
IRL : TGACGAATTGTAATATTAAGTGCGACACCACAAAATAAACACAAAAAGCC
IRR : ACGGTTTGTCAATCTAACTGCGACACTTCTTCCCAAAATGCTTCGTATGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGGCTTTAA | TGAA | AGAAAAAAGT | 4 |
DNA sequence
TGACGAATTGTAATATTAAGTGCGACACCACAAAATAAACACAAAAAGCCCATGATCCTTCGTGTAAAATGAAGTTACCACACAACCCTTACACGGAGGT
TTATCATGAGCTACTCCCATCTTACCACGTTTGAACGTGGACGACTAGAAACCCTTCAAAAGTTGGGCTGGTCGACTCGACAAATCGCTAAAGAACTCAA
TCGCCACCATTCCACGATTGCTCGAGAATTAAAGCGTAATCGTACAAAAGAATATGTTAGTGAAGTGGCTCATGAAAGATACGTCGAACGCCGTAAAGGC
TGTAAACCAAAGGGGAAATGGTCCCCTGAACTAGCCACGATTATTGAAGAAAAACTTCAATTAACATGGTCTCCAGAACAGATCATTGGTCGTCTATCTG
AACTAAATCTATCGTTTAAAACCATTTATCGTTGGCTCTATCTAGGTTTAGTAAATAAGTCGGATCTCAGCGTGCTTCGACACAAAGGGAAACGTCAAAA
ACCCATGGAAACTAGAGGACGTTTTAACATTGGGACCTCGATTGATCAGCGTCCAAAAGAAGTAAAGAAAAGAACAACATTTGGTCACTGGGAGCTTGAT
ACAATGGTTTCAAGTCGCGGAAAAAGCAAAGGGTGTTTAGCTACCTTCGCAGAGCGAAAAACACGGATGTATCTTGCAGTAAAAATGGACAATCGCACTT
CTTCATCCATGGAAACCGCTATTCTACGCATGGTTAACAAGTATCCCCTAGGTGTTTTTAAAACTTCAACGGTTGACCGCGGGAAAGAATTTGCGTGTTA
TTCAAACATTGAAGAGCAGGTGGATATGGCTGTTTATTTCGCTGACCCATATGCCTCCTGGCAACGTGGAACCAACGAGAATGCCAATGGTCTCTTACGT
GAATTTTTCCCTAAGAAGACAGATCTAGCTCTCATTACTGAAGAGGAACTAGAACTGGCCTTGCATCTAATCAATCATCGTCCAAGAAAATGCCTTGGTT
GGAAAACTTCATACGAAGCATTTTGGGAAGAAGTGTCGCAGTTAGATTGACAAACCGT
TTATCATGAGCTACTCCCATCTTACCACGTTTGAACGTGGACGACTAGAAACCCTTCAAAAGTTGGGCTGGTCGACTCGACAAATCGCTAAAGAACTCAA
TCGCCACCATTCCACGATTGCTCGAGAATTAAAGCGTAATCGTACAAAAGAATATGTTAGTGAAGTGGCTCATGAAAGATACGTCGAACGCCGTAAAGGC
TGTAAACCAAAGGGGAAATGGTCCCCTGAACTAGCCACGATTATTGAAGAAAAACTTCAATTAACATGGTCTCCAGAACAGATCATTGGTCGTCTATCTG
AACTAAATCTATCGTTTAAAACCATTTATCGTTGGCTCTATCTAGGTTTAGTAAATAAGTCGGATCTCAGCGTGCTTCGACACAAAGGGAAACGTCAAAA
ACCCATGGAAACTAGAGGACGTTTTAACATTGGGACCTCGATTGATCAGCGTCCAAAAGAAGTAAAGAAAAGAACAACATTTGGTCACTGGGAGCTTGAT
ACAATGGTTTCAAGTCGCGGAAAAAGCAAAGGGTGTTTAGCTACCTTCGCAGAGCGAAAAACACGGATGTATCTTGCAGTAAAAATGGACAATCGCACTT
CTTCATCCATGGAAACCGCTATTCTACGCATGGTTAACAAGTATCCCCTAGGTGTTTTTAAAACTTCAACGGTTGACCGCGGGAAAGAATTTGCGTGTTA
TTCAAACATTGAAGAGCAGGTGGATATGGCTGTTTATTTCGCTGACCCATATGCCTCCTGGCAACGTGGAACCAACGAGAATGCCAATGGTCTCTTACGT
GAATTTTTCCCTAAGAAGACAGATCTAGCTCTCATTACTGAAGAGGAACTAGAACTGGCCTTGCATCTAATCAATCATCGTCCAAGAAAATGCCTTGGTT
GGAAAACTTCATACGAAGCATTTTGGGAAGAAGTGTCGCAGTTAGATTGACAAACCGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
945 bp | 314 aa | 106 | 1050 | + | No |
Chemistry : DDE
ORF sequence :
MSYSHLTTFERGRLETLQKLGWSTRQIAKELNRHHSTIARELKRNRTKEYVSEVAHERYVERRKGCKPKGKWSPELATIIEEKLQLTWSPEQIIGRLSEL
NLSFKTIYRWLYLGLVNKSDLSVLRHKGKRQKPMETRGRFNIGTSIDQRPKEVKKRTTFGHWELDTMVSSRGKSKGCLATFAERKTRMYLAVKMDNRTSS
SMETAILRMVNKYPLGVFKTSTVDRGKEFACYSNIEEQVDMAVYFADPYASWQRGTNENANGLLREFFPKKTDLALITEEELELALHLINHRPRKCLGWK
TSYEAFWEEVSQLD
NLSFKTIYRWLYLGLVNKSDLSVLRHKGKRQKPMETRGRFNIGTSIDQRPKEVKKRTTFGHWELDTMVSSRGKSKGCLATFAERKTRMYLAVKMDNRTSS
SMETAILRMVNKYPLGVFKTSTVDRGKEFACYSNIEEQVDMAVYFADPYASWQRGTNENANGLLREFFPKKTDLALITEEELELALHLINHRPRKCLGWK
TSYEAFWEEVSQLD
Blast result :
Comments
There are 3 copies of IS658 on Bacillus halodurans chromosome.
References
1] Takami H, Han CG, Takaki Y, Ohtsubo E. (2001) J. Bacteriol. 183(14), 4345-56.