IS658

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002570 ND Bacillus halodurans
Bacillus halodurans C-125
DNA section
IS Length : 1058 bp

Ends


IR Length : 7/11

IRL : TGACGAATTGTAATATTAAGTGCGACACCACAAAATAAACACAAAAAGCC
IRR : ACGGTTTGTCAATCTAACTGCGACACTTCTTCCCAAAATGCTTCGTATGA

Insertion site


Left flankDirect repeatRight flankDR Length
GAGGCTTTAATGAAAGAAAAAAGT4

DNA sequence

TGACGAATTGTAATATTAAGTGCGACACCACAAAATAAACACAAAAAGCCCATGATCCTTCGTGTAAAATGAAGTTACCACACAACCCTTACACGGAGGT
TTATCATGAGCTACTCCCATCTTACCACGTTTGAACGTGGACGACTAGAAACCCTTCAAAAGTTGGGCTGGTCGACTCGACAAATCGCTAAAGAACTCAA
TCGCCACCATTCCACGATTGCTCGAGAATTAAAGCGTAATCGTACAAAAGAATATGTTAGTGAAGTGGCTCATGAAAGATACGTCGAACGCCGTAAAGGC
TGTAAACCAAAGGGGAAATGGTCCCCTGAACTAGCCACGATTATTGAAGAAAAACTTCAATTAACATGGTCTCCAGAACAGATCATTGGTCGTCTATCTG
AACTAAATCTATCGTTTAAAACCATTTATCGTTGGCTCTATCTAGGTTTAGTAAATAAGTCGGATCTCAGCGTGCTTCGACACAAAGGGAAACGTCAAAA
ACCCATGGAAACTAGAGGACGTTTTAACATTGGGACCTCGATTGATCAGCGTCCAAAAGAAGTAAAGAAAAGAACAACATTTGGTCACTGGGAGCTTGAT
ACAATGGTTTCAAGTCGCGGAAAAAGCAAAGGGTGTTTAGCTACCTTCGCAGAGCGAAAAACACGGATGTATCTTGCAGTAAAAATGGACAATCGCACTT
CTTCATCCATGGAAACCGCTATTCTACGCATGGTTAACAAGTATCCCCTAGGTGTTTTTAAAACTTCAACGGTTGACCGCGGGAAAGAATTTGCGTGTTA
TTCAAACATTGAAGAGCAGGTGGATATGGCTGTTTATTTCGCTGACCCATATGCCTCCTGGCAACGTGGAACCAACGAGAATGCCAATGGTCTCTTACGT
GAATTTTTCCCTAAGAAGACAGATCTAGCTCTCATTACTGAAGAGGAACTAGAACTGGCCTTGCATCTAATCAATCATCGTCCAAGAAAATGCCTTGGTT
GGAAAACTTCATACGAAGCATTTTGGGAAGAAGTGTCGCAGTTAGATTGACAAACCGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
945 bp314 aa1061050+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSYSHLTTFERGRLETLQKLGWSTRQIAKELNRHHSTIARELKRNRTKEYVSEVAHERYVERRKGCKPKGKWSPELATIIEEKLQLTWSPEQIIGRLSEL
NLSFKTIYRWLYLGLVNKSDLSVLRHKGKRQKPMETRGRFNIGTSIDQRPKEVKKRTTFGHWELDTMVSSRGKSKGCLATFAERKTRMYLAVKMDNRTSS
SMETAILRMVNKYPLGVFKTSTVDRGKEFACYSNIEEQVDMAVYFADPYASWQRGTNENANGLLREFFPKKTDLALITEEELELALHLINHRPRKCLGWK
TSYEAFWEEVSQLD

 

Blast result :
Comments
There are 3 copies of IS658 on Bacillus halodurans chromosome.
References
1] Takami H, Han CG, Takaki Y, Ohtsubo E. (2001) J. Bacteriol. 183(14), 4345-56.