IS6100
- Family IS6
- Group
Isoform Synonym(s) IS6100L, IS6100R, Tn610
Accession number | Transposition | Origin | Host |
---|---|---|---|
X53635 | Y | Mycobacterium fortuitum | Pseudomonas aeruginosa Xanthomonas campestris pv. vesicatoria BV5-4a Mycobacterium smegmatis mc2155 Mycobacterium fortuitum FC1 Arthrobacter sp. KI72 plasmid pOAD2 Pseudomonas sp. NK87 plasmid pNAD2 |
DNA section
IS Length : 880 bp
Ends
IR Length : 14
IRL : GGCTCTGTTGCAAAAATCGTGAAGCTTGAGCATGCTTGGCGGAGATTGGA
IRR : GGCTCTGTTGCAAAGATTGGCGGCAGTCAGAGGTAGGCTGTCGCTCTGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGCTCTGTTGCAAAAATCGTGAAGCTTGAGCATGCTTGGCGGAGATTGGACGGACGGAACGATGACGGATTTCAAGTGGCGCCATTTCCAGGGTGATGTG
ATCCTGTGGGCGGTGCGCTGGTATTGTCGCTATCCGATCAGCTATCGCGACCTTGAGGAAATGCTGGCGGAACGCGGCATTTCGGTCGACCATACGACGA
TCTATCGCTGGGTCCAGTGCTACGCCCCGGAGATGGAGAAGCGGCTGCGCTGGTTCTGGCGGCGTGGCTTTGATCCGAGCTGGCGCCTGGATGAAACCTA
CGTCAAGGTGCGGGGCAAGTGGACCTACCTGTACCGGGCAGTCGACAAGCGGGGCGACACGATCGATTTCTACCTGTCGCCGACCCGCAGCGCCAAGGCA
GCGAAGCGGTTCCTGGGCAAGGCCCTGCGAGGCCTGAAGCACTGGGAAAAGCCTGCCACGCTCAATACCGACAAAGCGCCGAGCTATGGTGCAGCGATCA
CCGAATTGAAGCGCGAAGGAAAGCTGGACCGGGAGACGGCCCACCGGCAGGTGAAGTATCTCAATAACGTGATCGAGGCCGATCACGGAAAGCTCAAGAT
ACTGATCAAGCCGGTGCGCGGTTTCAAATCGATCCCCACGGCCTATGCCACGATCAAGGGATTCGAAGTCATGCGAGCCCTGCGCAAAGGACAGGCTCGC
CCCTGGTGCCTGCAGCCCGGCATCAGGGGCGAGGTGCGCCTTGTGGAGAGAGCTTTTGGCATTGGGCCCTCGGCGCTGACGGAGGCCATGGGCATGCTCA
ACCACCATTTCGCAGCAGCCGCCTGATCGGCGCAGAGCGACAGCCTACCTCTGACTGCCGCCAATCTTTGCAACAGAGCC
ATCCTGTGGGCGGTGCGCTGGTATTGTCGCTATCCGATCAGCTATCGCGACCTTGAGGAAATGCTGGCGGAACGCGGCATTTCGGTCGACCATACGACGA
TCTATCGCTGGGTCCAGTGCTACGCCCCGGAGATGGAGAAGCGGCTGCGCTGGTTCTGGCGGCGTGGCTTTGATCCGAGCTGGCGCCTGGATGAAACCTA
CGTCAAGGTGCGGGGCAAGTGGACCTACCTGTACCGGGCAGTCGACAAGCGGGGCGACACGATCGATTTCTACCTGTCGCCGACCCGCAGCGCCAAGGCA
GCGAAGCGGTTCCTGGGCAAGGCCCTGCGAGGCCTGAAGCACTGGGAAAAGCCTGCCACGCTCAATACCGACAAAGCGCCGAGCTATGGTGCAGCGATCA
CCGAATTGAAGCGCGAAGGAAAGCTGGACCGGGAGACGGCCCACCGGCAGGTGAAGTATCTCAATAACGTGATCGAGGCCGATCACGGAAAGCTCAAGAT
ACTGATCAAGCCGGTGCGCGGTTTCAAATCGATCCCCACGGCCTATGCCACGATCAAGGGATTCGAAGTCATGCGAGCCCTGCGCAAAGGACAGGCTCGC
CCCTGGTGCCTGCAGCCCGGCATCAGGGGCGAGGTGCGCCTTGTGGAGAGAGCTTTTGGCATTGGGCCCTCGGCGCTGACGGAGGCCATGGGCATGCTCA
ACCACCATTTCGCAGCAGCCGCCTGATCGGCGCAGAGCGACAGCCTACCTCTGACTGCCGCCAATCTTTGCAACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
765 bp | 254 aa | 62 | 826 | + | No |
Chemistry : DDE
ORF sequence :
MLGGDWTDGTMTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYL
YRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKS
IPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
YRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKS
IPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
Blast result :
Comments
Tn611 (a Tn610 kanR derivative) has been derived into a thermosensitive transposition vector in plasmid pCG79, and an insertional mutant library has been obtained in Mycobacterium smegmatis (Guilhot et al., 1994). Similarly, the same element has also been incorporated into a conjugative, thermosensitive Escherichia coli - Mycobacterium smegmatis shuttle vector (Gavigan et al., 1995). Tn611 transposition generates cointegrate molecules in Mycobacterium smegmatis (Guilhot et al., 1994) and Streptomyces lividans (Smith and Dyson, 1995). Note that the DNA sequences of five RS sequences from the nylon oligomer degrading plasmid pOAD2 of Arthrobacter sp. are identical to that of IS6100, originally found in Mycobacterium smegmatis (Kato et al., 1994). In the Pseudomonas aeruginosa plasmid R1033, IS6100 is located downstream of Tn1696, at the 3'-end of the In4 integron (Hall et al., 1994). IS6100 is also present within the tnpR gene of the strR transposon Tn5393b from Xanthomonas campestris pv. vesicatoria, where it was shown to increase the expression of the strA-strB genes (Sundin and Bender, 1995). These observations indicate that IS6100 has been disseminated both widely and recently among very different bacterial species.
References