IS1S
- Family IS1
- Group
Isoform IS1ASynonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
M37615 | ND | Shigella sonnei | Shigella sonnei |
DNA section
IS Length : 768 bp
Ends
IR Length : 18/23
IRL : GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTG
IRR : GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC
GGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTC
AACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACTGCACGCATTATGGGCGTTGGCCTCAACACGATTTTACG
TCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTGATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCG
GGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGG
GCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATC
AGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGG
AGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC
GGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTC
AACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACTGCACGCATTATGGGCGTTGGCCTCAACACGATTTTACG
TCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTGATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCG
GGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGG
GCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATC
AGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGG
AGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
276 bp | 91 aa | 56 | 331 | + | No |
Description :
ORF sequence :
MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
525 bp | 174 aa | 229 | 753 | + | No |
Description :
ORF sequence :
YGHEWRWMPGNCTHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPF
DVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
DVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
698 bp | 232 aa | 56 | 753 | + | Yes |
Description :
ORF sequence :
MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKKLRPQSVTSRIQPGS
DVIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQH
LARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
DVIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQH
LARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
Blast result :
Comments
Additionnal Accession number : AF294823. This sequence is 100% aa similar to the sequence of the database.
The third ORf is the probable ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORf is the probable ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Ohtsubo, E., Ohtsubo, H., Doroszkiewicz, W., Nyman, K., and Davison, D. (1984) J. Gen. Appl. Microbiol. 30, 359-376.
2] Matsutani, S., Ohtsubo, H., Maeda, Y., and Ohtsubo, E. (1987) J. Mol. Biol. 196, 445-455.
3] Xu,D.Q., Cisar,J.O., Ambulos,N. Jr., Burr,D. and Kopecko,D.J. (2000) Direct submission GenBank.
2] Matsutani, S., Ohtsubo, H., Maeda, Y., and Ohtsubo, E. (1987) J. Mol. Biol. 196, 445-455.
3] Xu,D.Q., Cisar,J.O., Ambulos,N. Jr., Burr,D. and Kopecko,D.J. (2000) Direct submission GenBank.