IS195
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
U83995 | ND | Porphyromonas gingivalis | Porphyromonas gingivalis |
DNA section
IS Length : 1070 bp
Ends
IR Length : 12
IRL : ACGTCAGTTCGACGAAGTAAAACGCCAATGAATTTGTTTTCTGATTAGTG
IRR : ACGTCAGTTCGATCTAAGCGGAAATAGGAAAGTTAGGGTTTCTGATGATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACAGAATAT | TATCGTTA | CAGGACAGGG | 8 |
DNA sequence
ACGTCAGTTCGACGAAGTAAAACGCCAATGAATTTGTTTTCTGATTAGTGGTAAACGCCCAAAGAACGTGGGCATTATACTTGAAAAAGTAGCGAATTAT
TTGTATCTTAGCAGTTGACAATCAATAAGATACGAACAAACAAAACGCTACTTTATGAAGACAAATATAGTTGATGTTTTTTGCATCATAGATGATTTCT
CCAAGCTTTTTGATGAAACAATCAAGAAAAAGACCCTCGAAGAGGCAGACAAAAAACGCAGGAATAGAAAGTTTAAGATGTCGGACAGTGAGGTCATGAC
CATCCTGATCCTGTTTCATCTGTCAAGATACCGAGATTTGAAAGCTTTTTATCTTCAATACATCACCCACTCGTGTCGATCCGAGTTCCCACATCTTGTC
TCTTATAATCGCTTTGTGGAGCTGCAAAGCAGGGTAGGTTTCAAGCTGATAGCATTTCTCAATATGTGTTGTTTGGGTCAATGTACTGGCATCTCTTTCA
TCGATTCCACCCCATTGAAGGCTTGTCATATCAAACGAGCTCATGGGCATAGGACGATGAGGGGATGGGCTCAAAAAGGCAAAAGCACCATGGGTTGGTT
TTATGGATTCAAACTACATATTGTTATCAACGACAGGGGTGAAATCATCAACTATCAAATCACACCGGGCAATTGTGATGACAGAGAACCTCTGAAAGAC
GGAACATTCACCAAGAATCTTTTTGGCAAACTCATTGCCGATAGAGGCTACATTTCCCAAAACCTTTTTGACCGGCTCTTTGTCGATGACATCCACATGA
TAACCAAAATCAAAAAGAACATGAAGAACTCCCTGATGCATCTATATGACAAAGTTTTATTGAGAAAGAGAGCCCTGATCGAAACGGTCAATGATATGCT
CAAAAATGTCTGTCAGATAGAGCACACGAGACATCGCAGTGTCAACAATTTTGTCACCAACCTGATCTCCGGTATCATCGCTTACAACATCCTGCCTAAA
AAGCCTGAACTCAATATTGAAATCATCAGAAACCCTAACTTTCCTATTTCCGCTTAGATCGAACTGACGT
TTGTATCTTAGCAGTTGACAATCAATAAGATACGAACAAACAAAACGCTACTTTATGAAGACAAATATAGTTGATGTTTTTTGCATCATAGATGATTTCT
CCAAGCTTTTTGATGAAACAATCAAGAAAAAGACCCTCGAAGAGGCAGACAAAAAACGCAGGAATAGAAAGTTTAAGATGTCGGACAGTGAGGTCATGAC
CATCCTGATCCTGTTTCATCTGTCAAGATACCGAGATTTGAAAGCTTTTTATCTTCAATACATCACCCACTCGTGTCGATCCGAGTTCCCACATCTTGTC
TCTTATAATCGCTTTGTGGAGCTGCAAAGCAGGGTAGGTTTCAAGCTGATAGCATTTCTCAATATGTGTTGTTTGGGTCAATGTACTGGCATCTCTTTCA
TCGATTCCACCCCATTGAAGGCTTGTCATATCAAACGAGCTCATGGGCATAGGACGATGAGGGGATGGGCTCAAAAAGGCAAAAGCACCATGGGTTGGTT
TTATGGATTCAAACTACATATTGTTATCAACGACAGGGGTGAAATCATCAACTATCAAATCACACCGGGCAATTGTGATGACAGAGAACCTCTGAAAGAC
GGAACATTCACCAAGAATCTTTTTGGCAAACTCATTGCCGATAGAGGCTACATTTCCCAAAACCTTTTTGACCGGCTCTTTGTCGATGACATCCACATGA
TAACCAAAATCAAAAAGAACATGAAGAACTCCCTGATGCATCTATATGACAAAGTTTTATTGAGAAAGAGAGCCCTGATCGAAACGGTCAATGATATGCT
CAAAAATGTCTGTCAGATAGAGCACACGAGACATCGCAGTGTCAACAATTTTGTCACCAACCTGATCTCCGGTATCATCGCTTACAACATCCTGCCTAAA
AAGCCTGAACTCAATATTGAAATCATCAGAAACCCTAACTTTCCTATTTCCGCTTAGATCGAACTGACGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
903 bp | 300 aa | 176 | 1078 | + | No |
Chemistry : DDE
ORF sequence :
MKTNIVDVFCIIDDFSKLFDETIKKKTLEEADKKRRNRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITHSCRSEFPHLVSYNRFVELQSRVGFKLIA
FLNMCCLGQCTGISFIDSTPLKACHIKRAHGHRTMRGWAQKGKSTMGWFYGFKLHIVINDRGEIINYQITPGNCDDREPLKDGTFTKNLFGKLIADRGYI
SQNLFDRLFVDDIHMITKIKKNMKNSLMHLYDKVLLRKRALIETVNDMLKNVCQIEHTRHRSVNNFVTNLISGIIAYNILPKKPELNIEIIRNPNFPISA
FLNMCCLGQCTGISFIDSTPLKACHIKRAHGHRTMRGWAQKGKSTMGWFYGFKLHIVINDRGEIINYQITPGNCDDREPLKDGTFTKNLFGKLIADRGYI
SQNLFDRLFVDDIHMITKIKKNMKNSLMHLYDKVLLRKRALIETVNDMLKNVCQIEHTRHRSVNNFVTNLISGIIAYNILPKKPELNIEIIRNPNFPISA
Blast result :
Comments
The ends of the element have been reinterpreted with respect to the published article. An "A" has been included at the 5' and a "T" at the 3' end. This removes an ambiguity in the original interpretation.
References
1] J.P. Lewis and F. L. Macrina (1998). Infect.and Immunity, 3035-3042