IS19

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF169285 Y Lactococcus lactis
Enterococcus faecium
Lactococcus lactis
DNA section
IS Length : 1038 bp

Ends


IR Length : 21

IRL : CCCGTGGTGCTAGTTAATTTTTTCCTAGAGGAAAATGTCTAAACATGTTG
IRR : CCCGTGGTGCTAGTTAATTTTAATATCCTAAAGAATATCTCAAAGTTCCT

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNTATCAATAANNNNNNNNNN9

DNA sequence

CCCGTGGTGCTAGTTAATTTTTTCCTAGAGGAAAATGTCTAAACATGTTGGTAAATCAACAAAAAAACGCATATAGTAGTACTCAAAACTCCCAAGAAAT
GAGGACTACATATGCGTTCATCAAAATATACTGAACATTATACAGATACTTTTATAACATTACAAGGAAATTATGAGAACTGTTTCTAACATATACCACA
ATTGTGTACCAGATAAGATTAAAAACCGAAGAAATACTGATCAAACTGAAGCAACGCGATACAGTGATTATTGCTTGTGTTATATGGGGCATAATTAATG
GCTATACTAGCCAAAGAGCCACGATATAGAGCGGTTTGTTCCGTCTTATTTCCTAATGGTGACTTTGCTAGTAGGAGTCGATTCACTCGCTTAAGTTCAA
ACTTAAGCTTACACTATCAAGATTATTCGATACTTTTTCATCAAGAAGCTCACCAAAGGTGAACTAGTCGGAATTATAGATAGTTATTCCTAGTCCATTA
TGTAAACCAGTTAGAAATAGACAAGCAAAACTATTGAATCAAATAGCCAAAGTTGGCTATAACTCAAACAAAAAGATCTTATTTTTATGGTCTTAAAATT
CATATGATCGTTACTAAGACTGGCTTTCCGATTACTTACTCAATCACAGAATCCAGGTGTCCATGACGTGAAAGTGTTAGAGACTTTATCGGAAGAAGCG
AATCTTCCCAATATCCTAGGGGACAAAGAGATATATTAGCCATAAAATCCATGAAAAGCTTGCCCTTAAGGGCATTACTATATCCGTTCCACCACGTAAA
AACATGGATAAAATCAGAAAAACTAGACCACAGCTTACTTGGAAAACAAAGAAAAACAGTTGAGACTGTTTTTTCTTCCTTAGAAAAATTAAGGTTGTCA
AAATTTCAACTCACGTTCTGTTAAAGGGCTAGAGAGTAGATTTGAAAGCATATTACTGGCTTACAGTGTTCATATTAAGTCGAGCACAACGACGTTTTGA
AGGAACTTTGAGATATTCTTTAGGATATTAAAATTAACTAGCACCACGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
906 bp301 aa1111016+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRSSKYTEHYTDTFITFKEIMRTVSNIYHNCVPDKIKNRRNTDQLKQRDTVIIACVIWGIINGYTSQRATYRAVCSVLFPNGDFASRSRFTRLSSNLAYT
IKIIRYFFIKKLTKGELVGIIDSFPSPLCKPVRNRQAKLLNQIAKVGYNSTKRSYFYGLKIHMIVTKTGFPITYSITNPGVHDVKVLETLSEEANLPNIL
GDKGYISHKIHEKLALKGITISVPPRKNMDKSEKLDHSLLGKQRKTVETVFSSLEKLGCQNFNSRSVKGLESRFESILLAYSVLLSRAQRRFEGTLRYSL
GY

 

Blast result :
Comments
IS19 is 98% aa similar to ISEfm1.
References
1] Perichon, B., Casadewall, B., Reynolds, P., and Courvalin, P. (1999) (Submit for publication)