IS19
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF169285 | Y | Lactococcus lactis | Enterococcus faecium Lactococcus lactis |
DNA section
IS Length : 1038 bp
Ends
IR Length : 21
IRL : CCCGTGGTGCTAGTTAATTTTTTCCTAGAGGAAAATGTCTAAACATGTTG
IRR : CCCGTGGTGCTAGTTAATTTTAATATCCTAAAGAATATCTCAAAGTTCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | TATCAATAA | NNNNNNNNNN | 9 |
DNA sequence
CCCGTGGTGCTAGTTAATTTTTTCCTAGAGGAAAATGTCTAAACATGTTGGTAAATCAACAAAAAAACGCATATAGTAGTACTCAAAACTCCCAAGAAAT
GAGGACTACATATGCGTTCATCAAAATATACTGAACATTATACAGATACTTTTATAACATTACAAGGAAATTATGAGAACTGTTTCTAACATATACCACA
ATTGTGTACCAGATAAGATTAAAAACCGAAGAAATACTGATCAAACTGAAGCAACGCGATACAGTGATTATTGCTTGTGTTATATGGGGCATAATTAATG
GCTATACTAGCCAAAGAGCCACGATATAGAGCGGTTTGTTCCGTCTTATTTCCTAATGGTGACTTTGCTAGTAGGAGTCGATTCACTCGCTTAAGTTCAA
ACTTAAGCTTACACTATCAAGATTATTCGATACTTTTTCATCAAGAAGCTCACCAAAGGTGAACTAGTCGGAATTATAGATAGTTATTCCTAGTCCATTA
TGTAAACCAGTTAGAAATAGACAAGCAAAACTATTGAATCAAATAGCCAAAGTTGGCTATAACTCAAACAAAAAGATCTTATTTTTATGGTCTTAAAATT
CATATGATCGTTACTAAGACTGGCTTTCCGATTACTTACTCAATCACAGAATCCAGGTGTCCATGACGTGAAAGTGTTAGAGACTTTATCGGAAGAAGCG
AATCTTCCCAATATCCTAGGGGACAAAGAGATATATTAGCCATAAAATCCATGAAAAGCTTGCCCTTAAGGGCATTACTATATCCGTTCCACCACGTAAA
AACATGGATAAAATCAGAAAAACTAGACCACAGCTTACTTGGAAAACAAAGAAAAACAGTTGAGACTGTTTTTTCTTCCTTAGAAAAATTAAGGTTGTCA
AAATTTCAACTCACGTTCTGTTAAAGGGCTAGAGAGTAGATTTGAAAGCATATTACTGGCTTACAGTGTTCATATTAAGTCGAGCACAACGACGTTTTGA
AGGAACTTTGAGATATTCTTTAGGATATTAAAATTAACTAGCACCACGGG
GAGGACTACATATGCGTTCATCAAAATATACTGAACATTATACAGATACTTTTATAACATTACAAGGAAATTATGAGAACTGTTTCTAACATATACCACA
ATTGTGTACCAGATAAGATTAAAAACCGAAGAAATACTGATCAAACTGAAGCAACGCGATACAGTGATTATTGCTTGTGTTATATGGGGCATAATTAATG
GCTATACTAGCCAAAGAGCCACGATATAGAGCGGTTTGTTCCGTCTTATTTCCTAATGGTGACTTTGCTAGTAGGAGTCGATTCACTCGCTTAAGTTCAA
ACTTAAGCTTACACTATCAAGATTATTCGATACTTTTTCATCAAGAAGCTCACCAAAGGTGAACTAGTCGGAATTATAGATAGTTATTCCTAGTCCATTA
TGTAAACCAGTTAGAAATAGACAAGCAAAACTATTGAATCAAATAGCCAAAGTTGGCTATAACTCAAACAAAAAGATCTTATTTTTATGGTCTTAAAATT
CATATGATCGTTACTAAGACTGGCTTTCCGATTACTTACTCAATCACAGAATCCAGGTGTCCATGACGTGAAAGTGTTAGAGACTTTATCGGAAGAAGCG
AATCTTCCCAATATCCTAGGGGACAAAGAGATATATTAGCCATAAAATCCATGAAAAGCTTGCCCTTAAGGGCATTACTATATCCGTTCCACCACGTAAA
AACATGGATAAAATCAGAAAAACTAGACCACAGCTTACTTGGAAAACAAAGAAAAACAGTTGAGACTGTTTTTTCTTCCTTAGAAAAATTAAGGTTGTCA
AAATTTCAACTCACGTTCTGTTAAAGGGCTAGAGAGTAGATTTGAAAGCATATTACTGGCTTACAGTGTTCATATTAAGTCGAGCACAACGACGTTTTGA
AGGAACTTTGAGATATTCTTTAGGATATTAAAATTAACTAGCACCACGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
906 bp | 301 aa | 111 | 1016 | + | No |
Chemistry : DDE
ORF sequence :
MRSSKYTEHYTDTFITFKEIMRTVSNIYHNCVPDKIKNRRNTDQLKQRDTVIIACVIWGIINGYTSQRATYRAVCSVLFPNGDFASRSRFTRLSSNLAYT
IKIIRYFFIKKLTKGELVGIIDSFPSPLCKPVRNRQAKLLNQIAKVGYNSTKRSYFYGLKIHMIVTKTGFPITYSITNPGVHDVKVLETLSEEANLPNIL
GDKGYISHKIHEKLALKGITISVPPRKNMDKSEKLDHSLLGKQRKTVETVFSSLEKLGCQNFNSRSVKGLESRFESILLAYSVLLSRAQRRFEGTLRYSL
GY
IKIIRYFFIKKLTKGELVGIIDSFPSPLCKPVRNRQAKLLNQIAKVGYNSTKRSYFYGLKIHMIVTKTGFPITYSITNPGVHDVKVLETLSEEANLPNIL
GDKGYISHKIHEKLALKGITISVPPRKNMDKSEKLDHSLLGKQRKTVETVFSSLEKLGCQNFNSRSVKGLESRFESILLAYSVLLSRAQRRFEGTLRYSL
GY
Blast result :
Comments
IS19 is 98% aa similar to ISEfm1.
References
1] Perichon, B., Casadewall, B., Reynolds, P., and Courvalin, P. (1999) (Submit for publication)