IS1634

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF062493 ND Mycoplasma mycoides
Mycoplasma mycoides subsp. mycoides SC
DNA section
IS Length : 1873 bp

Ends


IR Length : 15/16

IRL : CCTACGTTTCCCACTTAGTCGCGAAAACACTCAGTTTTCAGCGGCTATAT
IRR : CCTACGTTTCCCAGTTTAAGCATAAAACAAGAAAACATACTTATGTAAAT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CCTACGTTTCCCACTTAGTCGCGAAAACACTCAGTTTTCAGCGGCTATATTTTTTTATAAAAAAAATATAATTTATTATGCTTTTATGCTTAAATATGAT
ATAATAAAGACGTGAAGAAGTCAAGAAATGATGTAAAAAGACAATGAAGAACATCAATAGCAAGAGTTAAAAAAGGCGAATACTTATCAATTGGAGTGCC
AAGACCAGATAACAAAGGTTTTGTATATAGATTGGGATATGGATATTTGCATGAATTAAAACAATATCACGATGATCCGCTAGCAATTATCAAAGCAATT
ATTGCAAACTTTCCATTGCCTTGAACAAAAGAACAAGCAAGAACTAAATTAGATGAAATTTTTAAAGAGAAAAAAGAAACCAAAAAAGAAGTTTTAGAAA
GGTTTAAAAGTTACGAAGTAGTTGAAAAACTATTTGATTATTTCAATATTTTTAATGATTGTTCTCCCACAAAATCGACAACATTAAAAGATGTTGTTTT
ACAGTTGATTTATCAAAGAATTAAAAATCCAATAAGTGTTTTTAACACTTATAAGACAGCAAAAAAAGAAAAAATAGACACTCATTCAAAAAATTCATTT
TATAGATCATTAGACTATATAGCAAAAAACAAAGATGAAATTTTAAGAAATTTAAATGCAAAAATTTGTGCAAATACCAATAGAAAAATTGATGTATTAT
GATTTGACGCAACAACTACTTATTTTGAAACATTTTCTCGTGAAGGTTATAAAAAACCTGGTTATTCAAAAGATGGAAAATTTAAAGAAGACCAGATTGT
TATAGGTATGGCAACTGATGAAAATGGAATACCGTTACACTACAAAATATTTCCAGGAAATGTTGCTGATCCAAATACTTTAATACCATTTATGCTTGAA
ATTGCAGATATTTATGAAGTTAACAGTGTAACTATAATTGCTGACAAAGGAATGAGTGTTAATAGAAATATTAGATTTTTAGAATCTAAGAATTGAAAAT
ACATAATCTCATACAGAATGAAAGCTGGAAGCAAACAATTTAAAGAGTATATATTAGATGAAAAAGATTATATAAATGATGGTGGTTTGATATACAAAAC
TCGTGATATTGCATCTTCATACAATAAAAAAAGAATTAATGGACATTTTAGAAGACAAATAATTAGTTTTAGTCAAAAACGAGCAACTAAAGACAAAAAC
GATAGAGACATTTTAATTCAAAATTTCACTAAGAAAATGAATAAAGATAATCTTGTTTCTTGTGATGATTTAGCGGGATCTAAAAAATATAGATTCTTTA
AACCTATAAACAAAGGTGCATTTTATGAACTTGACATAGAAAAAATACAAGAAGATCAAAAATATGATGGATACTATATTTATGAAACAAATAGAACAGA
TTTATCAGTAAAAGAAGTTATTAATTTATATTCAAAACAATGACAAATTGAGTCTAATTTCAAGACATTAAAAGGTAAATTATCTCTTCGTCCAATGTAT
TTATCAACTTGAAACCATATTGTTGGTTACATTTGTTTATGTTTCATTTCATTAGTGTTTTTAAACTACATCATCTACATTCTAAATTCAAAATTAGGAC
TGACTGGAAAAAGCAAAATCACTGAGCATAAAGTGATTAATGTTATCAAAGAAGTTAAAGAAATTGAAGTATTTGTAAATAAACAAAAAATCGAAACTAT
ACAAGTGTATAATGATGAGTTACAAGAAAGTTGGCAAACTTATCAAATATTATTAGAACTTTTAACAAAAGAAAAAGTCACTTAGACATTACATTATAAA
AAACATAACTTATGAGATCAAAAATTTACATAAGTATGTTTTCTTGTTTTATGCTTAAACTGGGAAACGTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1602 bp533 aa1841785+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSIGVPRPDNKGFVYRLGYGYLHELKQYHDDPLAIIKAIIANFPLPWTKEQARTKLDEIFKEKKETKKEVLERFKSYEVVEKLFDYFNIFNDCSPTKSTT
LKDVVLQLIYQRIKNPISVFNTYKTAKKEKIDTHSKNSFYRSLDYIAKNKDEILRNLNAKICANTNRKIDVLWFDATTTYFETFSREGYKKPGYSKDGKF
KEDQIVIGMATDENGIPLHYKIFPGNVADPNTLIPFMLEIADIYEVNSVTIIADKGMSVNRNIRFLESKNWKYIISYRMKAGSKQFKEYILDEKDYINDG
GLIYKTRDIASSYNKKRINGHFRRQIISFSQKRATKDKNDRDILIQNFTKKMNKDNLVSCDDLAGSKKYRFFKPINKGAFYELDIEKIQEDQKYDGYYIY
ETNRTDLSVKEVINLYSKQWQIESNFKTLKGKLSLRPMYLSTWNHIVGYICLCFISLVFLNYIIYILNSKLGLTGKSKITEHKVINVIKEVKEIEVFVNK
QKIETIQVYNDELQESWQTYQILLELLTKEKVT

 

Blast result :
Comments
Direct repeats of 21 bp, 70 bp, 75 bp and 478 bp. There are about 30 copies (7 % of total genomic DNA) . See also AF101410, AF101411, AF101412 and AF101413. IS1634 is distantly related to IS1549 from Mycobacterium stigmatis.
References
1] Vieli, E.M., Nicolet, J. and Frey, J. (1999). J. Bact. 1319-1323.