IS1634
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF062493 | ND | Mycoplasma mycoides | Mycoplasma mycoides subsp. mycoides SC |
DNA section
IS Length : 1873 bp
Ends
IR Length : 15/16
IRL : CCTACGTTTCCCACTTAGTCGCGAAAACACTCAGTTTTCAGCGGCTATAT
IRR : CCTACGTTTCCCAGTTTAAGCATAAAACAAGAAAACATACTTATGTAAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CCTACGTTTCCCACTTAGTCGCGAAAACACTCAGTTTTCAGCGGCTATATTTTTTTATAAAAAAAATATAATTTATTATGCTTTTATGCTTAAATATGAT
ATAATAAAGACGTGAAGAAGTCAAGAAATGATGTAAAAAGACAATGAAGAACATCAATAGCAAGAGTTAAAAAAGGCGAATACTTATCAATTGGAGTGCC
AAGACCAGATAACAAAGGTTTTGTATATAGATTGGGATATGGATATTTGCATGAATTAAAACAATATCACGATGATCCGCTAGCAATTATCAAAGCAATT
ATTGCAAACTTTCCATTGCCTTGAACAAAAGAACAAGCAAGAACTAAATTAGATGAAATTTTTAAAGAGAAAAAAGAAACCAAAAAAGAAGTTTTAGAAA
GGTTTAAAAGTTACGAAGTAGTTGAAAAACTATTTGATTATTTCAATATTTTTAATGATTGTTCTCCCACAAAATCGACAACATTAAAAGATGTTGTTTT
ACAGTTGATTTATCAAAGAATTAAAAATCCAATAAGTGTTTTTAACACTTATAAGACAGCAAAAAAAGAAAAAATAGACACTCATTCAAAAAATTCATTT
TATAGATCATTAGACTATATAGCAAAAAACAAAGATGAAATTTTAAGAAATTTAAATGCAAAAATTTGTGCAAATACCAATAGAAAAATTGATGTATTAT
GATTTGACGCAACAACTACTTATTTTGAAACATTTTCTCGTGAAGGTTATAAAAAACCTGGTTATTCAAAAGATGGAAAATTTAAAGAAGACCAGATTGT
TATAGGTATGGCAACTGATGAAAATGGAATACCGTTACACTACAAAATATTTCCAGGAAATGTTGCTGATCCAAATACTTTAATACCATTTATGCTTGAA
ATTGCAGATATTTATGAAGTTAACAGTGTAACTATAATTGCTGACAAAGGAATGAGTGTTAATAGAAATATTAGATTTTTAGAATCTAAGAATTGAAAAT
ACATAATCTCATACAGAATGAAAGCTGGAAGCAAACAATTTAAAGAGTATATATTAGATGAAAAAGATTATATAAATGATGGTGGTTTGATATACAAAAC
TCGTGATATTGCATCTTCATACAATAAAAAAAGAATTAATGGACATTTTAGAAGACAAATAATTAGTTTTAGTCAAAAACGAGCAACTAAAGACAAAAAC
GATAGAGACATTTTAATTCAAAATTTCACTAAGAAAATGAATAAAGATAATCTTGTTTCTTGTGATGATTTAGCGGGATCTAAAAAATATAGATTCTTTA
AACCTATAAACAAAGGTGCATTTTATGAACTTGACATAGAAAAAATACAAGAAGATCAAAAATATGATGGATACTATATTTATGAAACAAATAGAACAGA
TTTATCAGTAAAAGAAGTTATTAATTTATATTCAAAACAATGACAAATTGAGTCTAATTTCAAGACATTAAAAGGTAAATTATCTCTTCGTCCAATGTAT
TTATCAACTTGAAACCATATTGTTGGTTACATTTGTTTATGTTTCATTTCATTAGTGTTTTTAAACTACATCATCTACATTCTAAATTCAAAATTAGGAC
TGACTGGAAAAAGCAAAATCACTGAGCATAAAGTGATTAATGTTATCAAAGAAGTTAAAGAAATTGAAGTATTTGTAAATAAACAAAAAATCGAAACTAT
ACAAGTGTATAATGATGAGTTACAAGAAAGTTGGCAAACTTATCAAATATTATTAGAACTTTTAACAAAAGAAAAAGTCACTTAGACATTACATTATAAA
AAACATAACTTATGAGATCAAAAATTTACATAAGTATGTTTTCTTGTTTTATGCTTAAACTGGGAAACGTAGG
ATAATAAAGACGTGAAGAAGTCAAGAAATGATGTAAAAAGACAATGAAGAACATCAATAGCAAGAGTTAAAAAAGGCGAATACTTATCAATTGGAGTGCC
AAGACCAGATAACAAAGGTTTTGTATATAGATTGGGATATGGATATTTGCATGAATTAAAACAATATCACGATGATCCGCTAGCAATTATCAAAGCAATT
ATTGCAAACTTTCCATTGCCTTGAACAAAAGAACAAGCAAGAACTAAATTAGATGAAATTTTTAAAGAGAAAAAAGAAACCAAAAAAGAAGTTTTAGAAA
GGTTTAAAAGTTACGAAGTAGTTGAAAAACTATTTGATTATTTCAATATTTTTAATGATTGTTCTCCCACAAAATCGACAACATTAAAAGATGTTGTTTT
ACAGTTGATTTATCAAAGAATTAAAAATCCAATAAGTGTTTTTAACACTTATAAGACAGCAAAAAAAGAAAAAATAGACACTCATTCAAAAAATTCATTT
TATAGATCATTAGACTATATAGCAAAAAACAAAGATGAAATTTTAAGAAATTTAAATGCAAAAATTTGTGCAAATACCAATAGAAAAATTGATGTATTAT
GATTTGACGCAACAACTACTTATTTTGAAACATTTTCTCGTGAAGGTTATAAAAAACCTGGTTATTCAAAAGATGGAAAATTTAAAGAAGACCAGATTGT
TATAGGTATGGCAACTGATGAAAATGGAATACCGTTACACTACAAAATATTTCCAGGAAATGTTGCTGATCCAAATACTTTAATACCATTTATGCTTGAA
ATTGCAGATATTTATGAAGTTAACAGTGTAACTATAATTGCTGACAAAGGAATGAGTGTTAATAGAAATATTAGATTTTTAGAATCTAAGAATTGAAAAT
ACATAATCTCATACAGAATGAAAGCTGGAAGCAAACAATTTAAAGAGTATATATTAGATGAAAAAGATTATATAAATGATGGTGGTTTGATATACAAAAC
TCGTGATATTGCATCTTCATACAATAAAAAAAGAATTAATGGACATTTTAGAAGACAAATAATTAGTTTTAGTCAAAAACGAGCAACTAAAGACAAAAAC
GATAGAGACATTTTAATTCAAAATTTCACTAAGAAAATGAATAAAGATAATCTTGTTTCTTGTGATGATTTAGCGGGATCTAAAAAATATAGATTCTTTA
AACCTATAAACAAAGGTGCATTTTATGAACTTGACATAGAAAAAATACAAGAAGATCAAAAATATGATGGATACTATATTTATGAAACAAATAGAACAGA
TTTATCAGTAAAAGAAGTTATTAATTTATATTCAAAACAATGACAAATTGAGTCTAATTTCAAGACATTAAAAGGTAAATTATCTCTTCGTCCAATGTAT
TTATCAACTTGAAACCATATTGTTGGTTACATTTGTTTATGTTTCATTTCATTAGTGTTTTTAAACTACATCATCTACATTCTAAATTCAAAATTAGGAC
TGACTGGAAAAAGCAAAATCACTGAGCATAAAGTGATTAATGTTATCAAAGAAGTTAAAGAAATTGAAGTATTTGTAAATAAACAAAAAATCGAAACTAT
ACAAGTGTATAATGATGAGTTACAAGAAAGTTGGCAAACTTATCAAATATTATTAGAACTTTTAACAAAAGAAAAAGTCACTTAGACATTACATTATAAA
AAACATAACTTATGAGATCAAAAATTTACATAAGTATGTTTTCTTGTTTTATGCTTAAACTGGGAAACGTAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1602 bp | 533 aa | 184 | 1785 | + | No |
Chemistry : DDE
ORF sequence :
MSIGVPRPDNKGFVYRLGYGYLHELKQYHDDPLAIIKAIIANFPLPWTKEQARTKLDEIFKEKKETKKEVLERFKSYEVVEKLFDYFNIFNDCSPTKSTT
LKDVVLQLIYQRIKNPISVFNTYKTAKKEKIDTHSKNSFYRSLDYIAKNKDEILRNLNAKICANTNRKIDVLWFDATTTYFETFSREGYKKPGYSKDGKF
KEDQIVIGMATDENGIPLHYKIFPGNVADPNTLIPFMLEIADIYEVNSVTIIADKGMSVNRNIRFLESKNWKYIISYRMKAGSKQFKEYILDEKDYINDG
GLIYKTRDIASSYNKKRINGHFRRQIISFSQKRATKDKNDRDILIQNFTKKMNKDNLVSCDDLAGSKKYRFFKPINKGAFYELDIEKIQEDQKYDGYYIY
ETNRTDLSVKEVINLYSKQWQIESNFKTLKGKLSLRPMYLSTWNHIVGYICLCFISLVFLNYIIYILNSKLGLTGKSKITEHKVINVIKEVKEIEVFVNK
QKIETIQVYNDELQESWQTYQILLELLTKEKVT
LKDVVLQLIYQRIKNPISVFNTYKTAKKEKIDTHSKNSFYRSLDYIAKNKDEILRNLNAKICANTNRKIDVLWFDATTTYFETFSREGYKKPGYSKDGKF
KEDQIVIGMATDENGIPLHYKIFPGNVADPNTLIPFMLEIADIYEVNSVTIIADKGMSVNRNIRFLESKNWKYIISYRMKAGSKQFKEYILDEKDYINDG
GLIYKTRDIASSYNKKRINGHFRRQIISFSQKRATKDKNDRDILIQNFTKKMNKDNLVSCDDLAGSKKYRFFKPINKGAFYELDIEKIQEDQKYDGYYIY
ETNRTDLSVKEVINLYSKQWQIESNFKTLKGKLSLRPMYLSTWNHIVGYICLCFISLVFLNYIIYILNSKLGLTGKSKITEHKVINVIKEVKEIEVFVNK
QKIETIQVYNDELQESWQTYQILLELLTKEKVT
Blast result :
Comments
Direct repeats of 21 bp, 70 bp, 75 bp and 478 bp. There are about 30 copies (7 % of total genomic DNA) . See also AF101410, AF101411, AF101412 and AF101413. IS1634 is distantly related to IS1549 from Mycobacterium stigmatis.
References
1] Vieli, E.M., Nicolet, J. and Frey, J. (1999). J. Bact. 1319-1323.