IS1630
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF100324 | ND | Mycoplasma fermentans | Mycoplasma fermentans II-20/1 Mycoplasma fermentans PG18 |
DNA section
IS Length : 1423 bp
Ends
IR Length : 44/50
IRL : AATGCTGGATATTTTCCAGCATTGCTACATTGTAATCTGAAACTTTACAC
IRR : AATGCTGGAAAATATCCAGCATTCCTAGATTGTAATCTGTAAGTTTACAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAATCAAAAA | AATGCTGGAAAATATCCAGCATT | TTTTATTTTA | 23 |
AAAAATTAAA | AAAGACCATTGTGGTCTTT | TTTTACATAC | 19 |
TCAATATTAA | TATCAAGCTTATTATTGAGCTTGATA | TTTTTTACTT | 26 |
AAGAAAAAAG | AATATTGCTAATTAAAGCAATATT | CTATTTTTAA | 24 |
GTATAAAAAG | ACTTAAATCTTTTTTGGATTTAAGT | CTAATTCTTT | 25 |
ATAAAAAATA | GACCTTAACATTATGTTAAAGTC | TATATTATTA | 23 |
DNA sequence
AATGCTGGATATTTTCCAGCATTGCTACATTGTAATCTGAAACTTTACACATTTTAGATAGAATCTATAATGGGTGAAGTTTTTTTTATAAAAAAAGTCA
CCCAAAGAGTATTTGGCGACTGTCATGAAGAAATGCAAAAAAAATTATCATGAAATGAACGCACTGTTCTTGAATACTTACTTTGAGCAACTAATTATAG
TATAACAAAAATAGCAAAAATATTAGGTTATTCAAGAACAACTATTAATAATGAAATAAAAAATAATTCTACTTTTTGGGGTTATTTTGCTTTAGATGCA
ATTGAAAAAACAATTACAAGAGAAAAGTGAAAAAATCATTTTAAATTTTTAAACAATTTAAATAAATATAAAGAATTTTCTTCTTTATTTAAAAAAGAAT
ATGATGGCAAATTGTGAACTGTCAAATTAACAATTGAAAAAATAAAAAATCTTTATCCTAATATTGATGTTCCTTCTTTTAAAACAGTCTACAATTGAAT
AAAAAGTGGTTATTGAATTTTGAACTGAAAAGGTTTATTAAGAAAAGTCTACAAAAAAGGTGGAAAAAGAGAGAAACAAAGCGCTGCTAGAAGATTGGTT
GGCGCACGTTATGTAAGACCTTTTTGATCTAGACCAGCAAACATAAACGAAAGAAAAGAATTCGGCCATTGGGAAATAGACCTTATTATAGGCAAGAGTA
AAGGCACACATTGTCATTTACTTAGTTTTACCGAAAGAGTCTCTAGATATGGGTTTTTGGTAAAAATTCCTAATAAAAATCCATGAAATTTGAATTTGTA
TTTATGGAATCTTATTTGAAAACATAAATTAAATGTTAAATCTATAACTCAGGATAATGGATTAGAATTTTCAACATTATTTTTCATTGGATATAAACTA
AAAATTTTTATATATAAAGCTGATCCATATGCTTCTTTTCAAAGGGGTTTAAATGAAAATTTCAATGGTTTAGTTAGAAGATTTTTTAAGAAAAAAACTA
ATTTTGATGATATTACTGAAGAAGAAATTCTAAAAGTACAAAATGAAATAAACAATCGTCCAAGAGAAATTTTTGGATATTTATCTGCTTTAGAAATGTA
CGAAAAATTGAATGCAGAAAATCCTTGAAATTCAACAGGTATTGACAAATTATTATATGGAAAACAAAAGAGAAACTGAGAAAGTAACAAGAATAGAAAT
TTGTTTTTCAAAAAAATAGGAAAATTAAAATAATATTTTAGAAAGGGCGACAAGTCGCCAAATATTTTAGGGAGGGCTAATGCCCTCACTTTTATTTGTC
CTATTGGACAAAAAATAATAACAATATTAATAATTAAAAAGGAATATCGACATGCGATATTCCAAATTTCTAGGTGTAAACTTACAGATTACAATCTAGG
AATGCTGGATATTTTCCAGCATT
CCCAAAGAGTATTTGGCGACTGTCATGAAGAAATGCAAAAAAAATTATCATGAAATGAACGCACTGTTCTTGAATACTTACTTTGAGCAACTAATTATAG
TATAACAAAAATAGCAAAAATATTAGGTTATTCAAGAACAACTATTAATAATGAAATAAAAAATAATTCTACTTTTTGGGGTTATTTTGCTTTAGATGCA
ATTGAAAAAACAATTACAAGAGAAAAGTGAAAAAATCATTTTAAATTTTTAAACAATTTAAATAAATATAAAGAATTTTCTTCTTTATTTAAAAAAGAAT
ATGATGGCAAATTGTGAACTGTCAAATTAACAATTGAAAAAATAAAAAATCTTTATCCTAATATTGATGTTCCTTCTTTTAAAACAGTCTACAATTGAAT
AAAAAGTGGTTATTGAATTTTGAACTGAAAAGGTTTATTAAGAAAAGTCTACAAAAAAGGTGGAAAAAGAGAGAAACAAAGCGCTGCTAGAAGATTGGTT
GGCGCACGTTATGTAAGACCTTTTTGATCTAGACCAGCAAACATAAACGAAAGAAAAGAATTCGGCCATTGGGAAATAGACCTTATTATAGGCAAGAGTA
AAGGCACACATTGTCATTTACTTAGTTTTACCGAAAGAGTCTCTAGATATGGGTTTTTGGTAAAAATTCCTAATAAAAATCCATGAAATTTGAATTTGTA
TTTATGGAATCTTATTTGAAAACATAAATTAAATGTTAAATCTATAACTCAGGATAATGGATTAGAATTTTCAACATTATTTTTCATTGGATATAAACTA
AAAATTTTTATATATAAAGCTGATCCATATGCTTCTTTTCAAAGGGGTTTAAATGAAAATTTCAATGGTTTAGTTAGAAGATTTTTTAAGAAAAAAACTA
ATTTTGATGATATTACTGAAGAAGAAATTCTAAAAGTACAAAATGAAATAAACAATCGTCCAAGAGAAATTTTTGGATATTTATCTGCTTTAGAAATGTA
CGAAAAATTGAATGCAGAAAATCCTTGAAATTCAACAGGTATTGACAAATTATTATATGGAAAACAAAAGAGAAACTGAGAAAGTAACAAGAATAGAAAT
TTGTTTTTCAAAAAAATAGGAAAATTAAAATAATATTTTAGAAAGGGCGACAAGTCGCCAAATATTTTAGGGAGGGCTAATGCCCTCACTTTTATTTGTC
CTATTGGACAAAAAATAATAACAATATTAATAATTAAAAAGGAATATCGACATGCGATATTCCAAATTTCTAGGTGTAAACTTACAGATTACAATCTAGG
AATGCTGGATATTTTCCAGCATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1101 bp | 366 aa | 133 | 1233 | + | No |
Chemistry : DDE
ORF sequence :
MQKKLSWNERTVLEYLLWATNYSITKIAKILGYSRTTINNEIKNNSTFWGYFALDAIEKTITREKWKNHFKFLNNLNKYKEFSSLFKKEYDGKLWTVKLT
IEKIKNLYPNIDVPSFKTVYNWIKSGYWILNWKGLLRKVYKKGGKREKQSAARRLVGARYVRPFWSRPANINERKEFGHWEIDLIIGKSKGTHCHLLSFT
ERVSRYGFLVKIPNKNPWNLNLYLWNLIWKHKLNVKSITQDNGLEFSTLFFIGYKLKIFIYKADPYASFQRGLNENFNGLVRRFFKKKTNFDDITEEEIL
KVQNEINNRPREIFGYLSALEMYEKLNAENPWNSTGIDKLLYGKQKRNWESNKNRNLFFKKIGKLK
IEKIKNLYPNIDVPSFKTVYNWIKSGYWILNWKGLLRKVYKKGGKREKQSAARRLVGARYVRPFWSRPANINERKEFGHWEIDLIIGKSKGTHCHLLSFT
ERVSRYGFLVKIPNKNPWNLNLYLWNLIWKHKLNVKSITQDNGLEFSTLFFIGYKLKIFIYKADPYASFQRGLNENFNGLVRRFFKKKTNFDDITEEEIL
KVQNEINNRPREIFGYLSALEMYEKLNAENPWNSTGIDKLLYGKQKRNWESNKNRNLFFKKIGKLK
Blast result :
Comments
Ends of sequence defined by comparison of an empty site.
The inverted terminal repeat are longer than expected for this family element. A strong palindrome resembling transcription terminators appears to act as a target site in all 7 sequenced cases : AATGCTGGA.
Southern hybridazation indicated at least 7 copies in strain PG18.
The accession number of this IS are AF100324 (IS1630A), AF179373 (IS1630B), AF179374 (IS1630C) , AF179375 (IS1630D) , AF179376 (IS1630E), AF179377 (IS1630F) , AF179378 (IS1630G), Af179379 (IS1630H), AF179380 (IS1630I).
The inverted terminal repeat are longer than expected for this family element. A strong palindrome resembling transcription terminators appears to act as a target site in all 7 sequenced cases : AATGCTGGA.
Southern hybridazation indicated at least 7 copies in strain PG18.
The accession number of this IS are AF100324 (IS1630A), AF179373 (IS1630B), AF179374 (IS1630C) , AF179375 (IS1630D) , AF179376 (IS1630E), AF179377 (IS1630F) , AF179378 (IS1630G), Af179379 (IS1630H), AF179380 (IS1630I).
References