IS1595
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF249895 | ND | Xanthomonas campestris | Xanthomonas campestris pv. mangiferaeindicae |
DNA section
IS Length : 1072 bp
Ends
IR Length : 22/24
IRL : CCTGATTAGCCCTGACCTTCAGCCGCCAGTCGCAGATCTGCGCCGCGCTG
IRR : CCTGATTAGCCCTGACTCTCAGCCATGAAAATTGCTCGCTGCACGCAGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CCTGATTAGCCCTGACCTTCAGCCGCCAGTCGCAGATCTGCGCCGCGCTGGGTGGATGCTGCTGTCACTCTGAAGCCAACGAGGTGACGTGATGAGCATC
AATGCGGTGCAGTTCCAGGCTGGATTGTCGATGCCTGAGTTCTTCGCGTTCTACGGCACCGAGGCCAAGTGCTATCGCGCGCTCTACACGTGGCGTTGGC
CGCAGGGCTTTCGTTGCCCTGTTTGTGCCGGGCGCGTGCGCTCGCGTTTCAAGCGGCGTGCTGCGATCTACTACCAATGCAGCGCGTGCCGGCATCAGAC
CAGTCTGATGGCAGGCACGATGTTCGAAGGCACCAAACTGCCGCTGCGCACCTGGATGCTGGCCTTGCACCTGTTGACCTCGACCAAAACCAACATGGCC
GCACTGGAGCTGATGCGTCATCTGGGGGTTAACTACAAGACGGCCTGGCGGATGAAGCACAAGATCATGCAGGTCATGGCCGAGCGTGAAGCCACGCGGA
AATTGGCGGGTTTCGTGCAGATCGACGATGCCTATCTCGGCGGCGAGCGTAACGGTGGCAAGGCCGGACGCGGATCAGAGAACAAACAAGCGTTCCTGAT
TGCGGTGCAGACCGATGCCACCTTCACCGCGCCGCGCTTTGTGGTGATTGAGCCGGTGCGCAGCTTCGACAACACCTCGCTGCAGGACTGGATTGCCCGT
CGCCTGGCGCCCGAATGCGAGGTCTACACCGATGGGCTGGCCTGCTTCCGCCGGCTGGAAGACGCCGGCCACGCGCACACCACGCTGGACACTGGCGGTG
GTCGTGCCGCGACCGAAACGGCCGGTGCACGTTGGCTCAACGTGGTGCTGGGCAATCTCAAACGCGCCATCAGCGGCGTGTATCACGCTATCGCGCAAGG
CAAATACGCAAGGCGCTACCTGGGAGAAGCGGCCTATCGTTTTAATCGTCGATTCCGCTTGCGCGAGATGCTGCCGCGACTTGCCACGGCCATGATGCAA
TCCAACCCATGTCCAGAGCCGGTCCTGCGTGCAGCGAGCAATTTTCATGGCTGAGAGTCAGGGCTAATCAGG
AATGCGGTGCAGTTCCAGGCTGGATTGTCGATGCCTGAGTTCTTCGCGTTCTACGGCACCGAGGCCAAGTGCTATCGCGCGCTCTACACGTGGCGTTGGC
CGCAGGGCTTTCGTTGCCCTGTTTGTGCCGGGCGCGTGCGCTCGCGTTTCAAGCGGCGTGCTGCGATCTACTACCAATGCAGCGCGTGCCGGCATCAGAC
CAGTCTGATGGCAGGCACGATGTTCGAAGGCACCAAACTGCCGCTGCGCACCTGGATGCTGGCCTTGCACCTGTTGACCTCGACCAAAACCAACATGGCC
GCACTGGAGCTGATGCGTCATCTGGGGGTTAACTACAAGACGGCCTGGCGGATGAAGCACAAGATCATGCAGGTCATGGCCGAGCGTGAAGCCACGCGGA
AATTGGCGGGTTTCGTGCAGATCGACGATGCCTATCTCGGCGGCGAGCGTAACGGTGGCAAGGCCGGACGCGGATCAGAGAACAAACAAGCGTTCCTGAT
TGCGGTGCAGACCGATGCCACCTTCACCGCGCCGCGCTTTGTGGTGATTGAGCCGGTGCGCAGCTTCGACAACACCTCGCTGCAGGACTGGATTGCCCGT
CGCCTGGCGCCCGAATGCGAGGTCTACACCGATGGGCTGGCCTGCTTCCGCCGGCTGGAAGACGCCGGCCACGCGCACACCACGCTGGACACTGGCGGTG
GTCGTGCCGCGACCGAAACGGCCGGTGCACGTTGGCTCAACGTGGTGCTGGGCAATCTCAAACGCGCCATCAGCGGCGTGTATCACGCTATCGCGCAAGG
CAAATACGCAAGGCGCTACCTGGGAGAAGCGGCCTATCGTTTTAATCGTCGATTCCGCTTGCGCGAGATGCTGCCGCGACTTGCCACGGCCATGATGCAA
TCCAACCCATGTCCAGAGCCGGTCCTGCGTGCAGCGAGCAATTTTCATGGCTGAGAGTCAGGGCTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
963 bp | 320 aa | 92 | 1054 | + | No |
Chemistry : DDE
ORF sequence :
MSINAVQFQAGLSMPEFFAFYGTEAKCYRALYTWRWPQGFRCPVCAGRVRSRFKRRAAIYYQCSACRHQTSLMAGTMFEGTKLPLRTWMLALHLLTSTKT
NMAALELMRHLGVNYKTAWRMKHKIMQVMAEREATRKLAGFVQIDDAYLGGERNGGKAGRGSENKQAFLIAVQTDATFTAPRFVVIEPVRSFDNTSLQDW
IARRLAPECEVYTDGLACFRRLEDAGHAHTTLDTGGGRAATETAGARWLNVVLGNLKRAISGVYHAIAQGKYARRYLGEAAYRFNRRFRLREMLPRLATA
MMQSNPCPEPVLRAASNFHG
NMAALELMRHLGVNYKTAWRMKHKIMQVMAEREATRKLAGFVQIDDAYLGGERNGGKAGRGSENKQAFLIAVQTDATFTAPRFVVIEPVRSFDNTSLQDW
IARRLAPECEVYTDGLACFRRLEDAGHAHTTLDTGGGRAATETAGARWLNVVLGNLKRAISGVYHAIAQGKYARRYLGEAAYRFNRRFRLREMLPRLATA
MMQSNPCPEPVLRAASNFHG
Blast result :
Comments
IS1595 is 81% aa similar to ISXo2.
References
1] Gagnevin,L., Pruvost,O. and Leach,J.E.(2000) Direct submission GenBank.