IS1595

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF249895 ND Xanthomonas campestris
Xanthomonas campestris pv. mangiferaeindicae
DNA section
IS Length : 1072 bp

Ends


IR Length : 22/24

IRL : CCTGATTAGCCCTGACCTTCAGCCGCCAGTCGCAGATCTGCGCCGCGCTG
IRR : CCTGATTAGCCCTGACTCTCAGCCATGAAAATTGCTCGCTGCACGCAGGA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CCTGATTAGCCCTGACCTTCAGCCGCCAGTCGCAGATCTGCGCCGCGCTGGGTGGATGCTGCTGTCACTCTGAAGCCAACGAGGTGACGTGATGAGCATC
AATGCGGTGCAGTTCCAGGCTGGATTGTCGATGCCTGAGTTCTTCGCGTTCTACGGCACCGAGGCCAAGTGCTATCGCGCGCTCTACACGTGGCGTTGGC
CGCAGGGCTTTCGTTGCCCTGTTTGTGCCGGGCGCGTGCGCTCGCGTTTCAAGCGGCGTGCTGCGATCTACTACCAATGCAGCGCGTGCCGGCATCAGAC
CAGTCTGATGGCAGGCACGATGTTCGAAGGCACCAAACTGCCGCTGCGCACCTGGATGCTGGCCTTGCACCTGTTGACCTCGACCAAAACCAACATGGCC
GCACTGGAGCTGATGCGTCATCTGGGGGTTAACTACAAGACGGCCTGGCGGATGAAGCACAAGATCATGCAGGTCATGGCCGAGCGTGAAGCCACGCGGA
AATTGGCGGGTTTCGTGCAGATCGACGATGCCTATCTCGGCGGCGAGCGTAACGGTGGCAAGGCCGGACGCGGATCAGAGAACAAACAAGCGTTCCTGAT
TGCGGTGCAGACCGATGCCACCTTCACCGCGCCGCGCTTTGTGGTGATTGAGCCGGTGCGCAGCTTCGACAACACCTCGCTGCAGGACTGGATTGCCCGT
CGCCTGGCGCCCGAATGCGAGGTCTACACCGATGGGCTGGCCTGCTTCCGCCGGCTGGAAGACGCCGGCCACGCGCACACCACGCTGGACACTGGCGGTG
GTCGTGCCGCGACCGAAACGGCCGGTGCACGTTGGCTCAACGTGGTGCTGGGCAATCTCAAACGCGCCATCAGCGGCGTGTATCACGCTATCGCGCAAGG
CAAATACGCAAGGCGCTACCTGGGAGAAGCGGCCTATCGTTTTAATCGTCGATTCCGCTTGCGCGAGATGCTGCCGCGACTTGCCACGGCCATGATGCAA
TCCAACCCATGTCCAGAGCCGGTCCTGCGTGCAGCGAGCAATTTTCATGGCTGAGAGTCAGGGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
963 bp320 aa921054+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSINAVQFQAGLSMPEFFAFYGTEAKCYRALYTWRWPQGFRCPVCAGRVRSRFKRRAAIYYQCSACRHQTSLMAGTMFEGTKLPLRTWMLALHLLTSTKT
NMAALELMRHLGVNYKTAWRMKHKIMQVMAEREATRKLAGFVQIDDAYLGGERNGGKAGRGSENKQAFLIAVQTDATFTAPRFVVIEPVRSFDNTSLQDW
IARRLAPECEVYTDGLACFRRLEDAGHAHTTLDTGGGRAATETAGARWLNVVLGNLKRAISGVYHAIAQGKYARRYLGEAAYRFNRRFRLREMLPRLATA
MMQSNPCPEPVLRAASNFHG

 

Blast result :
Comments
IS1595 is 81% aa similar to ISXo2.
References
1] Gagnevin,L., Pruvost,O. and Leach,J.E.(2000) Direct submission GenBank.