IS1548
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Y14270 | ND | Streptococcus agalactiae | Streptococcus pyogenes MGAS6180 Streptococcus agalactiae Mc1 serotype III |
DNA section
IS Length : 1316 bp
Ends
IR Length : 20/24
IRL : CACGCCAAACGCATGAAGAAACTTTTGTTTTCAGAAAACTAGATTCATAA
IRR : CACGCCGTACGCATGAAAACTTTCTCTTCATCCTTTTGTGCCCGGACATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATTAACAAA | TC/GACCAATCCA/CCAC | TCTACTATTT | 14 |
DNA sequence
CACGCCAAACGCATGAAGAAACTTTTGTTTTCAGAAAACTAGATTCATAATGACAAAATCAATCAAAGTAGTACACTATAGATGAGGTGACTACGATGAT
TGATTTTATTATTTCTATTGATGATTGCGCAGTTGAATTGGATAGTCGTCAATCTTGGAAAATTCGCTACCCCTTATCAACCATTCTATTTCTTGTCTTC
GTTTGTCAGTTAGCTGGCATTGAAACCTGGAAGGAGATGGAAGATTTTATTGAAATGAATGAACCATTGTTTGCGACCTACGTTGATTTGAGTGAAGGTT
GTCCGTCTCATGATACCTTAGAGCGTGTGATTAGTCTTGTTAATTCAGACCGTTTAAAAGAGCTTAAAGTTCAATTTGAGCAATCATTGACAAGCTTAGA
TGCCGTTCATCAACTGATTTCAGTGGACGGTAAAACGATTCGAGGCAATCGAGGTAAAAATCAGAAGCCTGTTCATATTGTAACGGCTTATGATGGGGGT
CATCATCTTAGTTTGGGACAGGTAGCGGTTGAGGAGAAAAGTAATGAAATTGTTGCCATTCCTCAGTTATTGCGGACAATTGATATCCGTAAAAGCATTG
TAACGATAGACGCAATGGGCACGCAGACGGCTATCGTTGATACGATTATAAAAGGTAAAGCAGACTATTGCTTAGCCGTCAAAGGAAATCAAGAAACACT
TTATGATGATATTGCTCTTTATTTTAGTGATGTCAACTTATTGGAAGAACTCCAAGAAAATGCGCAGTATTATCAGACTGTTGAAAAATCTAGGGGACAG
ATTGAAGTTAGAGAATACTGGGTGTCTTCCGATATCAAATGGTTGTGTCAAAACCATCCCAAATGGCATAAGTTACGTGGTATTGGGATGACTCGTAACA
CGATTGATAAGGATGGTCAGCTGAGTCAAGAGAATCGTTATTTTATCTTTAGCTTTAAGCCGGATGTCCTCACATTTGCCAATTGTGTACGAGGTCATTG
GCAGATAGAGAGTATGCACTGGTTATTGGACGTTGTTTATCATGAAGATCATCATCAGACATTGGATAAAAGAGCCGCATTTAACCTAAATCTTATCCGA
AAAATGTGCTTATATTTTCTCAAAGTGATGGTATTTCCTAAAAAAGACCTCAGTTATCGTCGCAAACAACGGTATATTTCTGTCCATTTGGAAGATTATT
TAGTCCAATTATTTGGAGAAAGAGGCTAAGCAGATCATTGATTTAAAAAGGAATCTTTTCAAAATTGATGTCCGGGCACAAAAGGATGAAGAGAAAGTTT
TCATGCGTACGGCGTG
TGATTTTATTATTTCTATTGATGATTGCGCAGTTGAATTGGATAGTCGTCAATCTTGGAAAATTCGCTACCCCTTATCAACCATTCTATTTCTTGTCTTC
GTTTGTCAGTTAGCTGGCATTGAAACCTGGAAGGAGATGGAAGATTTTATTGAAATGAATGAACCATTGTTTGCGACCTACGTTGATTTGAGTGAAGGTT
GTCCGTCTCATGATACCTTAGAGCGTGTGATTAGTCTTGTTAATTCAGACCGTTTAAAAGAGCTTAAAGTTCAATTTGAGCAATCATTGACAAGCTTAGA
TGCCGTTCATCAACTGATTTCAGTGGACGGTAAAACGATTCGAGGCAATCGAGGTAAAAATCAGAAGCCTGTTCATATTGTAACGGCTTATGATGGGGGT
CATCATCTTAGTTTGGGACAGGTAGCGGTTGAGGAGAAAAGTAATGAAATTGTTGCCATTCCTCAGTTATTGCGGACAATTGATATCCGTAAAAGCATTG
TAACGATAGACGCAATGGGCACGCAGACGGCTATCGTTGATACGATTATAAAAGGTAAAGCAGACTATTGCTTAGCCGTCAAAGGAAATCAAGAAACACT
TTATGATGATATTGCTCTTTATTTTAGTGATGTCAACTTATTGGAAGAACTCCAAGAAAATGCGCAGTATTATCAGACTGTTGAAAAATCTAGGGGACAG
ATTGAAGTTAGAGAATACTGGGTGTCTTCCGATATCAAATGGTTGTGTCAAAACCATCCCAAATGGCATAAGTTACGTGGTATTGGGATGACTCGTAACA
CGATTGATAAGGATGGTCAGCTGAGTCAAGAGAATCGTTATTTTATCTTTAGCTTTAAGCCGGATGTCCTCACATTTGCCAATTGTGTACGAGGTCATTG
GCAGATAGAGAGTATGCACTGGTTATTGGACGTTGTTTATCATGAAGATCATCATCAGACATTGGATAAAAGAGCCGCATTTAACCTAAATCTTATCCGA
AAAATGTGCTTATATTTTCTCAAAGTGATGGTATTTCCTAAAAAAGACCTCAGTTATCGTCGCAAACAACGGTATATTTCTGTCCATTTGGAAGATTATT
TAGTCCAATTATTTGGAGAAAGAGGCTAAGCAGATCATTGATTTAAAAAGGAATCTTTTCAAAATTGATGTCCGGGCACAAAAGGATGAAGAGAAAGTTT
TCATGCGTACGGCGTG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1134 bp | 377 aa | 95 | 1228 | + | No |
Chemistry : Unknow
ORF sequence :
MIDFIISIDDCAVELDSRQSWKIRYPLSTILFLVFVCQLAGIETWKEMEDFIEMNEPLFATYVDLSEGCPSHDTLERVISLVNSDRLKELKVQFEQSLTS
LDAVHQLISVDGKTIRGNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQE
TLYDDIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWLCQNHPKWHKLRGIGMTRNTIDKDGQLSQENRYFIFSFKPDVLTFANCVRG
HWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLEDYLVQLFGERG
LDAVHQLISVDGKTIRGNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQE
TLYDDIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWLCQNHPKWHKLRGIGMTRNTIDKDGQLSQENRYFIFSFKPDVLTFANCVRG
HWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLEDYLVQLFGERG
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
189 bp | 62 aa | 702 | 890 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MMILLFILVMSTYWKNSKKMRSIIRLLKNLGDRLKLENTGCLPISNGCVKTIPNGISYVVLG
Blast result :
Comments
The transposase of IS1548 is 52% similar to IS1358. The 14 bp DR are imperfect. Note that unlike the others member of the family IS1548 carries a second small ORF (62 aa) which shows no similarities with others proteins.
References
1] Granlund,M., Oberg,L., Sellin,M. and Norgren,M.(1998)J. Infect. Dis. 177 (4), 967-976
2] Granlund,M. (1998) Direct Submission GenBank
2] Granlund,M. (1998) Direct Submission GenBank