IS1490
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
U80795 | ND | Burkholderia cepacia | Burkholderia cepacia AC1100 |
DNA section
IS Length : 1433 bp
Ends
IR Length : 19/25
IRL : GAGATAAGCTCGATTCTGGTGTACGGGGAAGTTTGAGTGCGAGGGATTGA
IRR : GAGATATAGTCAAGACTGGTGTACGAGCAGTTTGATGAGCAGCGATTTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GAGATAAGCTCGATTCTGGTGTACGGGGAAGTTTGAGTGCGAGGGATTGAAGGCGGTGGAGGTTTTAGCTGAGAATCTGATTGTCGAAGTCGGAAACTAG
CGAACAACAAACCATCCACCATGAGCAAGTTTACAGAAAAAGAAGTCGTTGGACTATCAGGCATCGGTCTGGGGCTGGACGAATTGGTTCGTCACGGAGC
TCGGCAGGTGATCCAGCAGGCAATCGAGGCGGAGCTGTCGTCGCTGCTGGAGCGCTTCGAGAACGTCAAGACCATGCATGGGCGACGCGCCGTGGTGCGC
AACGGCTATTTGCCGGAACGCGAAGTGTTGACAGCCGCCGGACCGATCGCGGTGAAGGTCCCCAAGGTTCGAGATCGTTCGGGAGCAGGCGTGAAATTCA
ATTCATCGATTGTGCCGCCCTATGTGAGGAAGTCGCCGCGCGTGAGTGCAGCGCTGCCCTGGCTGTATTTGAAGGGCATCTCGACGGGTGACATGAGCGA
GGCGCTGAGCGTGTTGCTGGGTGAGGACGCCAAAGGCTTGTCGGCGAACGTGGTGAGCCGCCTGAAGGCGCAATGGGCCGACGAGCATGCCAACTGGAGT
CGGCGCGAGCTATCGAAGTCACGCTATGTTTATTGGTGGGTCGACGGCATTCATACGGGTCTGCGCAGCGAGAATTCAGATGGGCAGTGCCTATTGGTCA
TCATCGGCGTGACGCCCGAGGGGAAGAAGGAACGTGTGGCGATCGGTGACGGGTATCGGGAGTCGAAAGCCTCGTGGCAGGAGCTCTTGCTTGATCTGAA
TGCGCGTGGCTTGCAGACGGGGCCCTTGCTGGCGGTCGGTGACGGTGCCATGGGTTTCTGGGCCGCGTTGGAAGAAGTATTTCCGGCGACGCGCGCTCAG
CGCTGCTGGTTTCACAAGATGGGCAACGTGCTCAACGCGATGCCGAAGTCGCTACAGGGTCGGGCCAAGGCGGATCTGCAGGCGATCTGGATGGCCGCGA
CACGCGCTGATGCCTATGCCGCGTTCGACCGGTTCGTGGCAATCCACGCGGCCAAGTATCCAAAGGCGACGGACACGCTGAAGAAGGATCGCGAAAGCTT
GCTCGCGTTCTACGACTTTCCCGCTGAGCACTGGCAGCATTTGCGAACGACCAATGCGATCGAGTCGACGTTTGCGACGGTACGTCACCGTACTACGCGT
ACGCGCAACTGCGTATCGCGACCCACCTTCCTGGGTCTGGCATTCAAGCTGATCGAGGAAGCCGAGAAAACCTGGCGCCGCATCAACGGCCCCGAACAGA
TCAAGCTGTTACTGGAGGGCATTGCATTCAGAGACGGTGAACCGGTGCAAGACGATCGACCGGATCAGCAGAAACTCGCCGCTTGAAATCGCTGCTCATC
AAACTGCTCGTACACCAGTCTTGACTATATCTC
CGAACAACAAACCATCCACCATGAGCAAGTTTACAGAAAAAGAAGTCGTTGGACTATCAGGCATCGGTCTGGGGCTGGACGAATTGGTTCGTCACGGAGC
TCGGCAGGTGATCCAGCAGGCAATCGAGGCGGAGCTGTCGTCGCTGCTGGAGCGCTTCGAGAACGTCAAGACCATGCATGGGCGACGCGCCGTGGTGCGC
AACGGCTATTTGCCGGAACGCGAAGTGTTGACAGCCGCCGGACCGATCGCGGTGAAGGTCCCCAAGGTTCGAGATCGTTCGGGAGCAGGCGTGAAATTCA
ATTCATCGATTGTGCCGCCCTATGTGAGGAAGTCGCCGCGCGTGAGTGCAGCGCTGCCCTGGCTGTATTTGAAGGGCATCTCGACGGGTGACATGAGCGA
GGCGCTGAGCGTGTTGCTGGGTGAGGACGCCAAAGGCTTGTCGGCGAACGTGGTGAGCCGCCTGAAGGCGCAATGGGCCGACGAGCATGCCAACTGGAGT
CGGCGCGAGCTATCGAAGTCACGCTATGTTTATTGGTGGGTCGACGGCATTCATACGGGTCTGCGCAGCGAGAATTCAGATGGGCAGTGCCTATTGGTCA
TCATCGGCGTGACGCCCGAGGGGAAGAAGGAACGTGTGGCGATCGGTGACGGGTATCGGGAGTCGAAAGCCTCGTGGCAGGAGCTCTTGCTTGATCTGAA
TGCGCGTGGCTTGCAGACGGGGCCCTTGCTGGCGGTCGGTGACGGTGCCATGGGTTTCTGGGCCGCGTTGGAAGAAGTATTTCCGGCGACGCGCGCTCAG
CGCTGCTGGTTTCACAAGATGGGCAACGTGCTCAACGCGATGCCGAAGTCGCTACAGGGTCGGGCCAAGGCGGATCTGCAGGCGATCTGGATGGCCGCGA
CACGCGCTGATGCCTATGCCGCGTTCGACCGGTTCGTGGCAATCCACGCGGCCAAGTATCCAAAGGCGACGGACACGCTGAAGAAGGATCGCGAAAGCTT
GCTCGCGTTCTACGACTTTCCCGCTGAGCACTGGCAGCATTTGCGAACGACCAATGCGATCGAGTCGACGTTTGCGACGGTACGTCACCGTACTACGCGT
ACGCGCAACTGCGTATCGCGACCCACCTTCCTGGGTCTGGCATTCAAGCTGATCGAGGAAGCCGAGAAAACCTGGCGCCGCATCAACGGCCCCGAACAGA
TCAAGCTGTTACTGGAGGGCATTGCATTCAGAGACGGTGAACCGGTGCAAGACGATCGACCGGATCAGCAGAAACTCGCCGCTTGAAATCGCTGCTCATC
AAACTGCTCGTACACCAGTCTTGACTATATCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1266 bp | 421 aa | 121 | 1386 | + | No |
Chemistry : DDE
ORF sequence :
MSKFTEKEVVGLSGIGLGLDELVRHGARQVIQQAIEAELSSLLERFENVKTMHGRRAVVRNGYLPEREVLTAAGPIAVKVPKVRDRSGAGVKFNSSIVPP
YVRKSPRVSAALPWLYLKGISTGDMSEALSVLLGEDAKGLSANVVSRLKAQWADEHANWSRRELSKSRYVYWWVDGIHTGLRSENSDGQCLLVIIGVTPE
GKKERVAIGDGYRESKASWQELLLDLNARGLQTGPLLAVGDGAMGFWAALEEVFPATRAQRCWFHKMGNVLNAMPKSLQGRAKADLQAIWMAATRADAYA
AFDRFVAIHAAKYPKATDTLKKDRESLLAFYDFPAEHWQHLRTTNAIESTFATVRHRTTRTRNCVSRPTFLGLAFKLIEEAEKTWRRINGPEQIKLLLEG
IAFRDGEPVQDDRPDQQKLAA
YVRKSPRVSAALPWLYLKGISTGDMSEALSVLLGEDAKGLSANVVSRLKAQWADEHANWSRRELSKSRYVYWWVDGIHTGLRSENSDGQCLLVIIGVTPE
GKKERVAIGDGYRESKASWQELLLDLNARGLQTGPLLAVGDGAMGFWAALEEVFPATRAQRCWFHKMGNVLNAMPKSLQGRAKADLQAIWMAATRADAYA
AFDRFVAIHAAKYPKATDTLKKDRESLLAFYDFPAEHWQHLRTTNAIESTFATVRHRTTRTRNCVSRPTFLGLAFKLIEEAEKTWRRINGPEQIKLLLEG
IAFRDGEPVQDDRPDQQKLAA
Blast result :
Comments
References