IS1384

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF052751 ND Pseudomonas putida
Pseudomonas putida
DNA section
IS Length : 1178 bp

Ends


IR Length : 9/12

IRL : TCTGAAAAAGACTTTCTGATTTGGCAAAATACCGCGACCCCACCCACCGA
IRR : TCTGAAGTAGCCATGTATTTCCCCGGCATACCACCTAGCGCAACTTTTAA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TCTGAAAAAGACTTTCTGATTTGGCAAAATACCGCGACCCCACCCACCGAGTTTCCCGATGAAGCAGATGACCTTCGCCGACGCCGAGTACGCTGGCAAG
CGCAAGCAAACCCGCAAGGAGTTGTTCCTGATCGAGATGGATCGGGTGGTGCCGTGGAAGGGCTTGATTGCTTTGATCGAGCCACATTATCCGAAAGGTG
AAGGTGGCCGTCCGGCCTACCCGTTGATGGCGATGCTGCGTGTGCATCTGCTGCAGAACTGGTTCGGCTACAGCGATCCAGCGATGGAGGAAGCGCTGTA
CGAAACCACGATCCTGCGCCAGTTTGCCGGGCTGAACCTGGAGCGCATCCCCGACGAAACCACCATTTTCAACTTCCGCCGCTTGCTGGAGAAACACGAG
CTGGCGGCCGGCATCCTCGCTGTCATCAATGGCTATCTGGGCGACCGCGGCCTGTCGCTGCGCCAGGGCACCATCGTCGATGCAACGCTGATCAATGCGC
CCAGTTCGACCAAGAACAAGGACGGCAAGCGCGACCCGGAAATGCACCAGACCAAGAAGGGAAACCAGTATTATTTTGGCATGAAGGCCCACATCGGCGC
CGATGACGAATCGGGTCTGGTGCACAGCGTAGTGGGCACGGCGGCCAATGTGGCGGATGTCACCCAGGTGGACAAATTGCTGCATGGCGACGAAAACGTG
GTCTGCGCCGATGCAGGCTACACCGGTGTCGAAAAGCGGCCCGAGCATGAAGGACGTGAAGTTATCTGGCAGGTGGCGGCACGCCGCAGCACCTACAAAA
AACTCGATAAGCGCAGCGTGCTGTACAAAGCCAAGCGCAAGATTGAAAAGGCCAAGGCTCAGGTGCGCGCCAAGGTCGAGCATCCGTTCCGGGTAATCAA
GCGCCAGTTCGGTTACACCAAGGTGCGCTTTCGCGGCTTGGCCAAAAACACGGCGCAACTGGTGACACTGTTCGCTCTGTCGAACCTGTGGATGGCGCGC
CGACATTTACTGACGAATGCAGGAGAGGTGCGCCTGTAATGCGGGAAATGGCCACCGGAGTGGGGTTCGGGTGGCGAAAACGTAAGAAATACTCGTCGAA
TTGATTGTTTTTTGATCATTTGGCGAGTTTAAAAGTTGCGCTAGGTGGTATGCCGGGGAAATACATGGCTACTTCAGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa591039+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQMTFADAEYAGKRKQTRKELFLIEMDRVVPWKGLIALIEPHYPKGEGGRPAYPLMAMLRVHLLQNWFGYSDPAMEEALYETTILRQFAGLNLERIPDE
TTIFNFRRLLEKHELAAGILAVINGYLGDRGLSLRQGTIVDATLINAPSSTKNKDGKRDPEMHQTKKGNQYYFGMKAHIGADDESGLVHSVVGTAANVAD
VTQVDKLLHGDENVVCADAGYTGVEKRPEHEGREVIWQVAARRSTYKKLDKRSVLYKAKRKIEKAKAQVRAKVEHPFRVIKRQFGYTKVRFRGLAKNTAQ
LVTLFALSNLWMARRHLLTNAGEVRL

 

Blast result :
Comments
Identical to transposase-like protein Tnpa1 from Pseudomonas stutzeri AN10 (accession number AF039533).
References
1] Rost, R., Lauf, U., Mueller, C., Burchhardt, G. and Herrmann, H. Direct submission GenBank.