IS1384
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF052751 | ND | Pseudomonas putida | Pseudomonas putida |
DNA section
IS Length : 1178 bp
Ends
IR Length : 9/12
IRL : TCTGAAAAAGACTTTCTGATTTGGCAAAATACCGCGACCCCACCCACCGA
IRR : TCTGAAGTAGCCATGTATTTCCCCGGCATACCACCTAGCGCAACTTTTAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TCTGAAAAAGACTTTCTGATTTGGCAAAATACCGCGACCCCACCCACCGAGTTTCCCGATGAAGCAGATGACCTTCGCCGACGCCGAGTACGCTGGCAAG
CGCAAGCAAACCCGCAAGGAGTTGTTCCTGATCGAGATGGATCGGGTGGTGCCGTGGAAGGGCTTGATTGCTTTGATCGAGCCACATTATCCGAAAGGTG
AAGGTGGCCGTCCGGCCTACCCGTTGATGGCGATGCTGCGTGTGCATCTGCTGCAGAACTGGTTCGGCTACAGCGATCCAGCGATGGAGGAAGCGCTGTA
CGAAACCACGATCCTGCGCCAGTTTGCCGGGCTGAACCTGGAGCGCATCCCCGACGAAACCACCATTTTCAACTTCCGCCGCTTGCTGGAGAAACACGAG
CTGGCGGCCGGCATCCTCGCTGTCATCAATGGCTATCTGGGCGACCGCGGCCTGTCGCTGCGCCAGGGCACCATCGTCGATGCAACGCTGATCAATGCGC
CCAGTTCGACCAAGAACAAGGACGGCAAGCGCGACCCGGAAATGCACCAGACCAAGAAGGGAAACCAGTATTATTTTGGCATGAAGGCCCACATCGGCGC
CGATGACGAATCGGGTCTGGTGCACAGCGTAGTGGGCACGGCGGCCAATGTGGCGGATGTCACCCAGGTGGACAAATTGCTGCATGGCGACGAAAACGTG
GTCTGCGCCGATGCAGGCTACACCGGTGTCGAAAAGCGGCCCGAGCATGAAGGACGTGAAGTTATCTGGCAGGTGGCGGCACGCCGCAGCACCTACAAAA
AACTCGATAAGCGCAGCGTGCTGTACAAAGCCAAGCGCAAGATTGAAAAGGCCAAGGCTCAGGTGCGCGCCAAGGTCGAGCATCCGTTCCGGGTAATCAA
GCGCCAGTTCGGTTACACCAAGGTGCGCTTTCGCGGCTTGGCCAAAAACACGGCGCAACTGGTGACACTGTTCGCTCTGTCGAACCTGTGGATGGCGCGC
CGACATTTACTGACGAATGCAGGAGAGGTGCGCCTGTAATGCGGGAAATGGCCACCGGAGTGGGGTTCGGGTGGCGAAAACGTAAGAAATACTCGTCGAA
TTGATTGTTTTTTGATCATTTGGCGAGTTTAAAAGTTGCGCTAGGTGGTATGCCGGGGAAATACATGGCTACTTCAGA
CGCAAGCAAACCCGCAAGGAGTTGTTCCTGATCGAGATGGATCGGGTGGTGCCGTGGAAGGGCTTGATTGCTTTGATCGAGCCACATTATCCGAAAGGTG
AAGGTGGCCGTCCGGCCTACCCGTTGATGGCGATGCTGCGTGTGCATCTGCTGCAGAACTGGTTCGGCTACAGCGATCCAGCGATGGAGGAAGCGCTGTA
CGAAACCACGATCCTGCGCCAGTTTGCCGGGCTGAACCTGGAGCGCATCCCCGACGAAACCACCATTTTCAACTTCCGCCGCTTGCTGGAGAAACACGAG
CTGGCGGCCGGCATCCTCGCTGTCATCAATGGCTATCTGGGCGACCGCGGCCTGTCGCTGCGCCAGGGCACCATCGTCGATGCAACGCTGATCAATGCGC
CCAGTTCGACCAAGAACAAGGACGGCAAGCGCGACCCGGAAATGCACCAGACCAAGAAGGGAAACCAGTATTATTTTGGCATGAAGGCCCACATCGGCGC
CGATGACGAATCGGGTCTGGTGCACAGCGTAGTGGGCACGGCGGCCAATGTGGCGGATGTCACCCAGGTGGACAAATTGCTGCATGGCGACGAAAACGTG
GTCTGCGCCGATGCAGGCTACACCGGTGTCGAAAAGCGGCCCGAGCATGAAGGACGTGAAGTTATCTGGCAGGTGGCGGCACGCCGCAGCACCTACAAAA
AACTCGATAAGCGCAGCGTGCTGTACAAAGCCAAGCGCAAGATTGAAAAGGCCAAGGCTCAGGTGCGCGCCAAGGTCGAGCATCCGTTCCGGGTAATCAA
GCGCCAGTTCGGTTACACCAAGGTGCGCTTTCGCGGCTTGGCCAAAAACACGGCGCAACTGGTGACACTGTTCGCTCTGTCGAACCTGTGGATGGCGCGC
CGACATTTACTGACGAATGCAGGAGAGGTGCGCCTGTAATGCGGGAAATGGCCACCGGAGTGGGGTTCGGGTGGCGAAAACGTAAGAAATACTCGTCGAA
TTGATTGTTTTTTGATCATTTGGCGAGTTTAAAAGTTGCGCTAGGTGGTATGCCGGGGAAATACATGGCTACTTCAGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 59 | 1039 | + | No |
Chemistry : DDE
ORF sequence :
MKQMTFADAEYAGKRKQTRKELFLIEMDRVVPWKGLIALIEPHYPKGEGGRPAYPLMAMLRVHLLQNWFGYSDPAMEEALYETTILRQFAGLNLERIPDE
TTIFNFRRLLEKHELAAGILAVINGYLGDRGLSLRQGTIVDATLINAPSSTKNKDGKRDPEMHQTKKGNQYYFGMKAHIGADDESGLVHSVVGTAANVAD
VTQVDKLLHGDENVVCADAGYTGVEKRPEHEGREVIWQVAARRSTYKKLDKRSVLYKAKRKIEKAKAQVRAKVEHPFRVIKRQFGYTKVRFRGLAKNTAQ
LVTLFALSNLWMARRHLLTNAGEVRL
TTIFNFRRLLEKHELAAGILAVINGYLGDRGLSLRQGTIVDATLINAPSSTKNKDGKRDPEMHQTKKGNQYYFGMKAHIGADDESGLVHSVVGTAANVAD
VTQVDKLLHGDENVVCADAGYTGVEKRPEHEGREVIWQVAARRSTYKKLDKRSVLYKAKRKIEKAKAQVRAKVEHPFRVIKRQFGYTKVRFRGLAKNTAQ
LVTLFALSNLWMARRHLLTNAGEVRL
Blast result :
Comments
Identical to transposase-like protein Tnpa1 from Pseudomonas stutzeri AN10 (accession number AF039533).
References
1] Rost, R., Lauf, U., Mueller, C., Burchhardt, G. and Herrmann, H. Direct submission GenBank.