IS1356

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISBmu12
Accession numberTranspositionOriginHost
U44828 ND Burkholderia cepacia
Burkholderia cepacia
Burkholderia multivorans ATCC 17616
DNA section
IS Length : 1354 bp

Ends


IR Length : 14/24

IRL : GAGCCTATCCGAACTTTTGTGTGTGAGGCATAAACTGATGGCCAAGGAGC
IRR : GAGGTATCCGGAATTCCGTGTGTGAGGCGGGTTGAGATTCAGATTCCAAT

Insertion site


Left flankDirect repeatRight flankDR Length
TTATTGCCGCCACCCAAGCCGCGGCGCGA9

DNA sequence

GAGCCTATCCGAACTTTTGTGTGTGAGGCATAAACTGATGGCCAAGGAGCCACGTTATGCCACGCAAACGCAAGGAAGAAGTGCCGGTAGAACCGGGCAA
GGGCTTGAACCTGGACCCGGAACTCATCAAGCAACTGGTGCCCGGAACGCTGGATCGGGCTTCGATCAACGAGCAATTCGCGGCCCTGAAGAAGGCGATA
TTCGAGCGCGCGCTGGGCGGCGAACTGACCCACCACCTGGGCTACGAGAAGGGCGATGCCAAGCCGGCGGGCCGCACGAACCATCGCAACGGCACCAGCC
GTAAGCGCATCGCGACCGACGATGATCTGCTCGACATCGAGATTCCGCGCGACCGCGAAGGCACGTTCGATCCGGTGCTGATTGCCAAGGGCGAGCGACG
CTTCACGGGCTTCGACGACAAGATCATTGCGATGTACGCACGCGGCATGAGCGTGCGGGAGATTCAGGGTTTCTTGCTGGAGATGTACGGCATCGAGGTG
TCGCCGGAATTCATCAGCACGGTGACCGACGCCGTGATCGACGAAGTGCGCGAGTGGCAGCAGCGGCCGCTTGAGCCGATGTACCCGGTCGTGTTCTTCG
ACGCCTTGCGAGTCAAGATCCGCGACGAAGGCGTCGTGCGCAACAAGGCGATCTACCTGGCGCTGGGCGTGCGCCGCGACGGCACACGCGACGTGCTGGG
CCTCTGGATCGAGCAGACCGAGGGCGCCAAGTTCTGGCTGCGGGTGGTCAACGAGCTGAAGCTGCGCGGCGTGCAGGACATTCTGATCGCCGTGGTCGAC
GGCCTGAAGGGCTTCCCGGAAGCGATCAACACGGTGTTCCCGGAAACGACGGTCCAGACCTGCATCGTGCATCTGATCCGGAACTCGCTGGACTTCGCCA
GTTGGAAGGACCGGAAATCGGTCGCGGCGGCGCTCAAGGAAGTCTATCGGGCACCGTCGGCCGAAGCGGCCGCCGTGGCGCTGGACGCGTTCGATACGAG
CCCGTGGGGTACGAAATACCCTCCGATTGCCGCGCTCTGGCGCCGGGCCTGGGATCAGGTGATTCCGTTCTACGCCTTCGCGCCCGACATCCGGAAAATT
GTATATACGACCAACGCGATCGAGTCGCTGCATATGCAGCTTCGAAAGATCATCAAGGCGCGCGGCCACTTCCCGTCGGACGAGGCCGCGCTCAAACTGA
TCTGGCTGGCGCTGCGCAACGTCGTGGCCAAGTGGACCGGCTCTCGGCACGATTGGAAGAGCGCGATGACCCAGTTCGCGCTGCTTTACCCCGAACGATT
CAACATTGGAATCTGAATCTCAACCCGCCTCACACACGGAATTCCGGATACCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1236 bp411 aa811316+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPVEPGKGLNLDPELIKQLVPGTLDRASINEQFAALKKAIFERALGGELTHHLGYEKGDAKPAGRTNHRNGTSRKRIATDDDLLDIEIPRDREGTFDPVL
IAKGERRFTGFDDKIIAMYARGMSVREIQGFLLEMYGIEVSPEFISTVTDAVIDEVREWQQRPLEPMYPVVFFDALRVKIRDEGVVRNKAIYLALGVRRD
GTRDVLGLWIEQTEGAKFWLRVVNELKLRGVQDILIAVVDGLKGFPEAINTVFPETTVQTCIVHLIRNSLDFASWKDRKSVAAALKEVYRAPSAEAAAVA
LDAFDTSPWGTKYPPIAALWRRAWDQVIPFYAFAPDIRKIVYTTNAIESLHMQLRKIIKARGHFPSDEAALKLIWLALRNVVAKWTGSRHDWKSAMTQFA
LLYPERFNIGI

 

Blast result :
Comments
IS1356 has been isolated from epidemic strains of Burkholderia cepacia infecting cystic fibrosis patients. Its is inserted into an IS402 element (Tyler et al., 1996). IS1356 putative transposase is 59 % identical to that of ISRm3 from Rhizobium meliloti.
References
1] Tyler, S.D., Rozee, K.R., and Johnson, W.M. (1996) J. Clin. Microbiol. 34, 1610-1616.