IS1326
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
U38187 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa |
DNA section
IS Length : 2470 bp
Ends
IR Length : 22/26
IRL : TGTTGAGTTGCATCTAAAATTGACCCACTTAGGGTAAAGATTTGCGTCGA
IRR : TGTTGATTTGCACCCAAATTTGACCCGGGATTTGCATTGAATTTTGACCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGTTGAGTTGCATCTAAAATTGACCCACTTAGGGTAAAGATTTGCGTCGAAATTTGACCCACGTATGACACTGTTTCCCGTCTGGATATGGCGGGAGAAA
TCAAGGAGTGATAAACGTGGCGATATTGAGCGCAATTCGACGCTGGCATTTTCGCGATGGTGCGTCGATTCGGGAAATAGCCCGACGAAGCGGCCTGTCC
AGGAACACCGTTCGCAAGTATTTGCAAAGCAAGGTGGTTGAACCGCAGTACCCAGCGCGAGACAGCGTTGGCAAGTTAAGTCCTTTTGAGCCCAAGTTAA
GGCAGTGGCTCTCCACCGAGCACAAAAAGACAAAGAAGCTGCGCAGAAACCTGCGCAGCATGTACCGGGATTTGGTCGCTTTGGGCTTTACCGGGTCTTA
TGACCGAGTGTGTGCCTTTGCCCGACAGTGGAAAGATTCCGAACAGTTCAAGGCGCAAACCTCGGGCAAGGGTTGTTTCATCCCCTTGCGCTTTGCTTGT
GGCGAAGCCTTCCAATTCGATTGGAGTGAGGACTTTGCCCGCATAGCGGGCAAACAGGTCAAACTTCAGATTGCCCAGTTTAAGTTGGCCCACAGCCGGG
CCTTTGTGCTTCGGGCTTACTACCAGCAAAAACATGAAATGCTGTTTGATGCCCACTGGCATGCCTTTCAAATCTTCGGTGGCATTCCCAAGCGCGGCAT
CTACGACAACATGAAGACCGCTGTGGATTCGGTGGGGCGTGGCAAAGAGCGCAGGGTCAATCAGCGGTTCACTGCCATGGTCAGCCACTACCTGTTTGAT
GCGCAGTTCTGTAATCCAGCATCGGGTTGGGAGAAAGGCCAGATTGAGAAGAACGTGCAGGATTCCCGCCAACGCCTGTGGCAAGGGGCACCAGACTTTC
AAAGCCTTGCTGATTTGAATGTGTGGCTTGAGCATCGCTGCAAAGCGCTGTGGTCTGAGCTGCGCCACCCCGAATTGGACCAAACCGTGCAAGAGGCCTT
TGCCGATGAACAAGGCGAGTTGATGGCGCTACCCAATGCCTTTGATGCATTCGTGGAGCAAACCAAGCGAGTCACTTCAACCTGCCTTGTTCACCACGAG
GGCAATCGCTACAGCGTTCCTGCCAGTTACGCCAACAGGGCCATCAGCCTTCGGATTTATGCAGACAAGCTGGTGATGGCTGCCGAAGGCCAACACATTG
CCGAGCATCCAAGATTGTTTGGCAGTGGCCACGCTCGGCGTGGCCACACACAATACGACTGGCACCATTACTTGTCTGTGCTTCAGAAGAAACCTGGGGC
GTTGCGCAATGGTGCGCCATTTGCTGAATTGCCACCCGCGTTCAAGAAGCTTCAATCCATCTTGCTGCAACGCCCCGGCGGTGACCGTGACATGGTGGAA
ATTCTGGCCCTTGTATTGCACCACGATGAAGGTGCGGTACTCAGTGCTGTGGAATTGGCATTGGAGTGTGGCAAGCCATCGAAGGAGCATGTGCTTAATC
TGTTGGGACGTTTGACCGAAGAACCTCCACCCAAACCGATTCCAATTCCCAAGGGGTTAAGGCTGACATTGGAACCACAGGCCAACGTGAACCGCTATGA
CAGTTTAAGGAGAGCCCATGATGCAGCATGAAGGCCATGTGAGAATCCTCAAATCCTTGAAACTCTTTGGCATGGCACACGCCATTGAGGAGTTGGGCAA
TCAGAATTCACCAGCATTTAATCAAGCCTTGCCCATGCTGGACAGCTTGATTAAAGCTGAAGTGGCAGAGCGTGAAGTACGTTCGGTGAACTATCAATTG
CGGGTGGCCAAGTTCCCCGTGTATCGGGACTTGGTGGGCTTTGACTTCAGTCAAAGCCTGGTTAATGAGGCCACGGTCAAACAATTGCACCGGTGCGACT
TCATGGAACAAGCCCAGAACGTGGTGCTGATTGGTGGGCCAGGCACAGGCAAGACTCACCTGGCCACAGCCATTGGTACACAAGCAGTGATGCACTTGAA
CCGACGGGTGCGTTTCTTCTCCACCGTGGATTTGGTCAATGCACTGGAGCAAGAGAAATCATCTGGGCGTCAGGGACAAATCGCAAACCGTCTGTTGTAT
GCCGATTTGGTGATTCTGGATGAGCTGGGATATTTGCCTTTTAGCCAAACCGGTGGGGCACTGCTGTTTCACCTGCTCTCAAAGCTGTACGAAAAAACCA
GCGTGATACTGACCACCAACTTGAGCTTCTCGGAATGGAGCCGAGTGTTTGGCGATGAAAAGATGACAACAGCGTTGTTGGACCGACTAACCCACCACTG
CCACATCCTGGAAACCGGCAATGAAAGTTACCGCTTCAAACACAGTTCAACTCAGAATAAGCAGGAGGAAAAACAGACCCGCAAACTGAAAATCGAGACA
TAATTCTGACAACAAGGGGTGGGTCAAAATTCAATGCAAATCCCGGGTCAAATTTGGGTGCAAATCAACA
TCAAGGAGTGATAAACGTGGCGATATTGAGCGCAATTCGACGCTGGCATTTTCGCGATGGTGCGTCGATTCGGGAAATAGCCCGACGAAGCGGCCTGTCC
AGGAACACCGTTCGCAAGTATTTGCAAAGCAAGGTGGTTGAACCGCAGTACCCAGCGCGAGACAGCGTTGGCAAGTTAAGTCCTTTTGAGCCCAAGTTAA
GGCAGTGGCTCTCCACCGAGCACAAAAAGACAAAGAAGCTGCGCAGAAACCTGCGCAGCATGTACCGGGATTTGGTCGCTTTGGGCTTTACCGGGTCTTA
TGACCGAGTGTGTGCCTTTGCCCGACAGTGGAAAGATTCCGAACAGTTCAAGGCGCAAACCTCGGGCAAGGGTTGTTTCATCCCCTTGCGCTTTGCTTGT
GGCGAAGCCTTCCAATTCGATTGGAGTGAGGACTTTGCCCGCATAGCGGGCAAACAGGTCAAACTTCAGATTGCCCAGTTTAAGTTGGCCCACAGCCGGG
CCTTTGTGCTTCGGGCTTACTACCAGCAAAAACATGAAATGCTGTTTGATGCCCACTGGCATGCCTTTCAAATCTTCGGTGGCATTCCCAAGCGCGGCAT
CTACGACAACATGAAGACCGCTGTGGATTCGGTGGGGCGTGGCAAAGAGCGCAGGGTCAATCAGCGGTTCACTGCCATGGTCAGCCACTACCTGTTTGAT
GCGCAGTTCTGTAATCCAGCATCGGGTTGGGAGAAAGGCCAGATTGAGAAGAACGTGCAGGATTCCCGCCAACGCCTGTGGCAAGGGGCACCAGACTTTC
AAAGCCTTGCTGATTTGAATGTGTGGCTTGAGCATCGCTGCAAAGCGCTGTGGTCTGAGCTGCGCCACCCCGAATTGGACCAAACCGTGCAAGAGGCCTT
TGCCGATGAACAAGGCGAGTTGATGGCGCTACCCAATGCCTTTGATGCATTCGTGGAGCAAACCAAGCGAGTCACTTCAACCTGCCTTGTTCACCACGAG
GGCAATCGCTACAGCGTTCCTGCCAGTTACGCCAACAGGGCCATCAGCCTTCGGATTTATGCAGACAAGCTGGTGATGGCTGCCGAAGGCCAACACATTG
CCGAGCATCCAAGATTGTTTGGCAGTGGCCACGCTCGGCGTGGCCACACACAATACGACTGGCACCATTACTTGTCTGTGCTTCAGAAGAAACCTGGGGC
GTTGCGCAATGGTGCGCCATTTGCTGAATTGCCACCCGCGTTCAAGAAGCTTCAATCCATCTTGCTGCAACGCCCCGGCGGTGACCGTGACATGGTGGAA
ATTCTGGCCCTTGTATTGCACCACGATGAAGGTGCGGTACTCAGTGCTGTGGAATTGGCATTGGAGTGTGGCAAGCCATCGAAGGAGCATGTGCTTAATC
TGTTGGGACGTTTGACCGAAGAACCTCCACCCAAACCGATTCCAATTCCCAAGGGGTTAAGGCTGACATTGGAACCACAGGCCAACGTGAACCGCTATGA
CAGTTTAAGGAGAGCCCATGATGCAGCATGAAGGCCATGTGAGAATCCTCAAATCCTTGAAACTCTTTGGCATGGCACACGCCATTGAGGAGTTGGGCAA
TCAGAATTCACCAGCATTTAATCAAGCCTTGCCCATGCTGGACAGCTTGATTAAAGCTGAAGTGGCAGAGCGTGAAGTACGTTCGGTGAACTATCAATTG
CGGGTGGCCAAGTTCCCCGTGTATCGGGACTTGGTGGGCTTTGACTTCAGTCAAAGCCTGGTTAATGAGGCCACGGTCAAACAATTGCACCGGTGCGACT
TCATGGAACAAGCCCAGAACGTGGTGCTGATTGGTGGGCCAGGCACAGGCAAGACTCACCTGGCCACAGCCATTGGTACACAAGCAGTGATGCACTTGAA
CCGACGGGTGCGTTTCTTCTCCACCGTGGATTTGGTCAATGCACTGGAGCAAGAGAAATCATCTGGGCGTCAGGGACAAATCGCAAACCGTCTGTTGTAT
GCCGATTTGGTGATTCTGGATGAGCTGGGATATTTGCCTTTTAGCCAAACCGGTGGGGCACTGCTGTTTCACCTGCTCTCAAAGCTGTACGAAAAAACCA
GCGTGATACTGACCACCAACTTGAGCTTCTCGGAATGGAGCCGAGTGTTTGGCGATGAAAAGATGACAACAGCGTTGTTGGACCGACTAACCCACCACTG
CCACATCCTGGAAACCGGCAATGAAAGTTACCGCTTCAAACACAGTTCAACTCAGAATAAGCAGGAGGAAAAACAGACCCGCAAACTGAAAATCGAGACA
TAATTCTGACAACAAGGGGTGGGTCAAAATTCAATGCAAATCCCGGGTCAAATTTGGGTGCAAATCAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1524 bp | 507 aa | 108 | 1631 | + | No |
Chemistry : DDE
ORF sequence :
MINVAILSAIRRWHFRDGASIREIARRSGLSRNTVRKYLQSKVVEPQYPARDSVGKLSPFEPKLRQWLSTEHKKTKKLRRNLRSMYRDLVALGFTGSYDR
VCAFARQWKDSEQFKAQTSGKGCFIPLRFACGEAFQFDWSEDFARIAGKQVKLQIAQFKLAHSRAFVLRAYYQQKHEMLFDAHWHAFQIFGGIPKRGIYD
NMKTAVDSVGRGKERRVNQRFTAMVSHYLFDAQFCNPASGWEKGQIEKNVQDSRQRLWQGAPDFQSLADLNVWLEHRCKALWSELRHPELDQTVQEAFAD
EQGELMALPNAFDAFVEQTKRVTSTCLVHHEGNRYSVPASYANRAISLRIYADKLVMAAEGQHIAEHPRLFGSGHARRGHTQYDWHHYLSVLQKKPGALR
NGAPFAELPPAFKKLQSILLQRPGGDRDMVEILALVLHHDEGAVLSAVELALECGKPSKEHVLNLLGRLTEEPPPKPIPIPKGLRLTLEPQANVNRYDSL
RRAHDAA
VCAFARQWKDSEQFKAQTSGKGCFIPLRFACGEAFQFDWSEDFARIAGKQVKLQIAQFKLAHSRAFVLRAYYQQKHEMLFDAHWHAFQIFGGIPKRGIYD
NMKTAVDSVGRGKERRVNQRFTAMVSHYLFDAQFCNPASGWEKGQIEKNVQDSRQRLWQGAPDFQSLADLNVWLEHRCKALWSELRHPELDQTVQEAFAD
EQGELMALPNAFDAFVEQTKRVTSTCLVHHEGNRYSVPASYANRAISLRIYADKLVMAAEGQHIAEHPRLFGSGHARRGHTQYDWHHYLSVLQKKPGALR
NGAPFAELPPAFKKLQSILLQRPGGDRDMVEILALVLHHDEGAVLSAVELALECGKPSKEHVLNLLGRLTEEPPPKPIPIPKGLRLTLEPQANVNRYDSL
RRAHDAA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
783 bp | 260 aa | 1621 | 2403 | + | No |
AG : IS21 helper
ORF sequence :
MQHEGHVRILKSLKLFGMAHAIEELGNQNSPAFNQALPMLDSLIKAEVAEREVRSVNYQLRVAKFPVYRDLVGFDFSQSLVNEATVKQLHRCDFMEQAQN
VVLIGGPGTGKTHLATAIGTQAVMHLNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLYADLVILDELGYLPFSQTGGALLFHLLSKLYEKTSVILTTN
LSFSEWSRVFGDEKMTTALLDRLTHHCHILETGNESYRFKHSSTQNKQEEKQTRKLKIET
VVLIGGPGTGKTHLATAIGTQAVMHLNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLYADLVILDELGYLPFSQTGGALLFHLLSKLYEKTSVILTTN
LSFSEWSRVFGDEKMTTALLDRLTHHCHILETGNESYRFKHSSTQNKQEEKQTRKLKIET
Blast result :
Comments
IS1326 has apparently mediated adjacent deletions in various integrons (In0, In5) generating defective transposons derivatives. IstA contains an unusual D, D(45), E motif and an HTH motif, whereas IstB has a distinctive set of NTP-binding domains (Brown et al., 1996). The two ORF overlap by 14 nt (4 aa). In addition to a 26 bp IR, the left end has three 22-bp DR (L1, L2 and L3), also found at the right end, as DR (R1 and R2):<br><br>L1: GAGTTGCATCTAAAATTGACCC (5-26)<br>L2: GATTTGCGTCGAAATTTGACCC (39-60)<br>L3: GATATTGAGCGCAATTCGACGC (122-143)<br>R1: GATTTGCATTGAATTTTGACCC (2421-2442) CS<br>R2: GATTTGCACCCAAATTTGACCC (2445-2466) CS<br>
References
1] Brown, H.J., Stokes, H.W., and Hall, R.M. (1996) J. Bacteriol. 178, 4429-4437.