IS1216

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
X81654 ND Enterococcus hirae
Lactococcus lactis subsp. cremoris UC653 plasmid pCI750
Enterococcus hirae S185
DNA section
IS Length : 809 bp

Ends


IR Length : 19

IRL : GGTTCTGTTGCAAAGTTTTAAATCTACTATCAAATAAGGTAGAATAATAG
IRR : GGTTCTGTTGCAAAGTTTTTAAATAAAGAATAAAATCCTTACGGTATCTA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGTTCTGTTGCAAAGTTTTAAATCTACTATCAAATAAGGTAGAATAATAGAAAAAGATAGCAGGAGGAATGACGATGAATCATTTTAAAGGAAAGCAATT
TCAGCAGGATGTGATTATTGTAGCCGTGGGCTACTATCTTCGTTATAACCTTAGCTATCGTGAAGTTCAAGAAATCTTATATGATCGTGGCATTAACGTT
TCTCATACGACGATTTATCGTTGGGTGCAAGAATATGCAAAACTACTCTATCAAATTTGGAAAAAGAAAAATAAAAAATCCTTTTATTCATGGAAAATGG
ATGAAACGTACATCAAAATTAAAGGAAAATGGCATTATTTGTATCGAGCCATCGATGCAGATGGTTTAACCTTGGATATTTGGTTACGTAAAAAACGGGA
CACACAGTCAGCCTATGCTTTTCTTAAGCGGTTAGTGAAGCAGTTTGATGAACCCCGAGTTGTAGTCACAGATAAAGCCCCTTCTATTACAAGTGCCTTT
AAGAAACTAAAAGAATACGGCTTTTATCAAGGGACAGAACATCGTACCATTAAATACCTGAATAATTTGATTGAACAAGACCATCGTCCAGTAAAGAGAC
GCAATAAATTCTATCGAAGTTTACGCACTGCCTCTACCACGATTAAAGGCATGGAAGCCATTCGAGGATTATATAAGAAAACCCGAAAAGAAGGCACTCT
CTTCGGGTTTTCGGTCTGTACTGAAATCAAGGTATTATTGGGAATCCCAGCTTAAATCATAGATACCGTAAGGATTTTATTCTTTATTTAAAAACTTTGC
AACAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa75755+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYAKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTL
DIWLRKKRDTQSAYAFLKRLVKQFDEPRVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLY
KKTRKEGTLFGFSVCTEIKVLLGIPA

 

Blast result :
Comments
IS1216 and IS1216V are 98.6 % identical, and their ORF are 99.6 % identical. Note that truncated IS1216 homologues have been found in Lactococcus lactis subsp. cremoris UC653 plasmid pCI750, in the vicinity of abiG, a gene responsible for abortive phage infection (O'Connor et al., 1996, Accession Number U60336).
References
1] Raze, D., Coyette, J., and Ghuysen, J.M. (1994) Unpublished. EMBL Data Library, Rel. 41.
2] O'Connor, L., Coffey, A., Daly, C., and Fitzgerald, G.F. (1996) Appl. Environ. Microbiol. 62, 3075-3082.