IS1216
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
X81654 | ND | Enterococcus hirae | Lactococcus lactis subsp. cremoris UC653 plasmid pCI750 Enterococcus hirae S185 |
DNA section
IS Length : 809 bp
Ends
IR Length : 19
IRL : GGTTCTGTTGCAAAGTTTTAAATCTACTATCAAATAAGGTAGAATAATAG
IRR : GGTTCTGTTGCAAAGTTTTTAAATAAAGAATAAAATCCTTACGGTATCTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTTCTGTTGCAAAGTTTTAAATCTACTATCAAATAAGGTAGAATAATAGAAAAAGATAGCAGGAGGAATGACGATGAATCATTTTAAAGGAAAGCAATT
TCAGCAGGATGTGATTATTGTAGCCGTGGGCTACTATCTTCGTTATAACCTTAGCTATCGTGAAGTTCAAGAAATCTTATATGATCGTGGCATTAACGTT
TCTCATACGACGATTTATCGTTGGGTGCAAGAATATGCAAAACTACTCTATCAAATTTGGAAAAAGAAAAATAAAAAATCCTTTTATTCATGGAAAATGG
ATGAAACGTACATCAAAATTAAAGGAAAATGGCATTATTTGTATCGAGCCATCGATGCAGATGGTTTAACCTTGGATATTTGGTTACGTAAAAAACGGGA
CACACAGTCAGCCTATGCTTTTCTTAAGCGGTTAGTGAAGCAGTTTGATGAACCCCGAGTTGTAGTCACAGATAAAGCCCCTTCTATTACAAGTGCCTTT
AAGAAACTAAAAGAATACGGCTTTTATCAAGGGACAGAACATCGTACCATTAAATACCTGAATAATTTGATTGAACAAGACCATCGTCCAGTAAAGAGAC
GCAATAAATTCTATCGAAGTTTACGCACTGCCTCTACCACGATTAAAGGCATGGAAGCCATTCGAGGATTATATAAGAAAACCCGAAAAGAAGGCACTCT
CTTCGGGTTTTCGGTCTGTACTGAAATCAAGGTATTATTGGGAATCCCAGCTTAAATCATAGATACCGTAAGGATTTTATTCTTTATTTAAAAACTTTGC
AACAGAACC
TCAGCAGGATGTGATTATTGTAGCCGTGGGCTACTATCTTCGTTATAACCTTAGCTATCGTGAAGTTCAAGAAATCTTATATGATCGTGGCATTAACGTT
TCTCATACGACGATTTATCGTTGGGTGCAAGAATATGCAAAACTACTCTATCAAATTTGGAAAAAGAAAAATAAAAAATCCTTTTATTCATGGAAAATGG
ATGAAACGTACATCAAAATTAAAGGAAAATGGCATTATTTGTATCGAGCCATCGATGCAGATGGTTTAACCTTGGATATTTGGTTACGTAAAAAACGGGA
CACACAGTCAGCCTATGCTTTTCTTAAGCGGTTAGTGAAGCAGTTTGATGAACCCCGAGTTGTAGTCACAGATAAAGCCCCTTCTATTACAAGTGCCTTT
AAGAAACTAAAAGAATACGGCTTTTATCAAGGGACAGAACATCGTACCATTAAATACCTGAATAATTTGATTGAACAAGACCATCGTCCAGTAAAGAGAC
GCAATAAATTCTATCGAAGTTTACGCACTGCCTCTACCACGATTAAAGGCATGGAAGCCATTCGAGGATTATATAAGAAAACCCGAAAAGAAGGCACTCT
CTTCGGGTTTTCGGTCTGTACTGAAATCAAGGTATTATTGGGAATCCCAGCTTAAATCATAGATACCGTAAGGATTTTATTCTTTATTTAAAAACTTTGC
AACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 75 | 755 | + | No |
Chemistry : DDE
ORF sequence :
MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYAKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTL
DIWLRKKRDTQSAYAFLKRLVKQFDEPRVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLY
KKTRKEGTLFGFSVCTEIKVLLGIPA
DIWLRKKRDTQSAYAFLKRLVKQFDEPRVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLY
KKTRKEGTLFGFSVCTEIKVLLGIPA
Blast result :
Comments
IS1216 and IS1216V are 98.6 % identical, and their ORF are 99.6 % identical. Note that truncated IS1216 homologues have been found in Lactococcus lactis subsp. cremoris UC653 plasmid pCI750, in the vicinity of abiG, a gene responsible for abortive phage infection (O'Connor et al., 1996, Accession Number U60336).
References
1] Raze, D., Coyette, J., and Ghuysen, J.M. (1994) Unpublished. EMBL Data Library, Rel. 41.
2] O'Connor, L., Coffey, A., Daly, C., and Fitzgerald, G.F. (1996) Appl. Environ. Microbiol. 62, 3075-3082.
2] O'Connor, L., Coffey, A., Daly, C., and Fitzgerald, G.F. (1996) Appl. Environ. Microbiol. 62, 3075-3082.