IS1188
- Family IS1380
- Group
Isoform IS616Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ277413 | ND | Bacteroides fragilis | Bacteroides fragilis |
DNA section
IS Length : 1691 bp
Ends
IR Length : 14/17
IRL : CCTGAATAATTCATAGTCTCCACAAAAAAGAGAACGCCCTTCTTGTATAT
IRR : CCTACATTATTCATAGTGGATTCATTTCAGGTTATCAAAACAGATATGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTATTCAAA | CTAA | CATCTATATC | 4 |
DNA sequence
CCTGAATAATTCATAGTCTCCACAAAAAAGAGAACGCCCTTCTTGTATATTTGCAAGAAAAGCATTAACTTTAAGGTGTTAAAAATAAACTTAATACCGG
CGTTCTCATGTGCAAAGATACAACAAATAACGGAGTCAGTCAAGAGAAAAATCTTTTTTCTTTTCAAGACGTGCTTCCTGACAGGAAAATTCAGGTCGAT
TTCAATGCCCCGGACATCTCGTCCAATGGAGGACTGGTGCTTGTCGGTCTAATGAAAGACAGCATAGCGCGAAAGATAGCGCGCCTAATTCCGGATTATC
GAAATCAGCTTTTCGTACAGCATTCCTACGAAGAGATGGTCTGCCAGCGTGTCGGACAGATAATGTGCGGCTACGAGGATGCCAACGACTGCGACCGCCT
GCGCCACGACAGTGCCCTTAAGATGAGCGTGGGCCGCAAGGCATCGGATCCCGGCCTGTGCTCACAACCGACGATGACACGGCTTGAGAATCATATTGAC
AAAAGGACCTTATGGAAAATAGCAGAACTGTTTGTCAAGGACTACATCTCATCCTTCGACAAAGCTCCGCGTAAGATTATTCTTGACGTTGACGATACAA
ATGCCAACACATACGGGGCGCAGCAGCTGTCGCTGTTCAATGATTACTATGACGAATACTGCTACATGCCGATGGTTATTTTCGACGGTATGAACGGCAA
GCTGATACTTCCTCTACTGAGACCGGGACGACGCAACAAGTCGCTGAACATCTTCGGTATACTGCGCAGAGTCATTGAATACATCCATAAGGAATGGCCT
CACACAATAATAGAACTCCGCGGGGACAGTCATTTCTGCAGCCATGAGTTTATGGACTGGGTCAAGACACATCTTTATGTGAGATTTATCACAGGGCTGT
CGGGCAATCCTGCGCTTATGAAGAAAATCGACAAGCAATTGCGCCGTGCCAAGGGGGATTTCGAACTTCACCATGAGGATGTACGCCGTTACTACAGCTT
TGAGTACAAAGCCAAATCATGGAAATACAGACAGAGGGTGATTGCAAAAATCGAAGTCTCCGACAAGGGTGTAAACGTCCGCTTCATAGTCACAAGCAAC
CGTAACAACAAGCCCGAGACAGTATATCGACGTTACTGTAAGCGCGGCACAATGGAGCTATGGATAAAAGACCTGAAGTATTTTCGAGCCGACAGGATGT
CGTGCAGTTCTTTCAGAGCCAATATGTTCCGGCTGTTTCTATATGGCGCGGCATATGTGACCGCATACCGTCTCAGGTCGAAGGCTTTCTCCAATACAGA
GGTCGGCGCCTTCACGATGGACAGCTTCATGAAGCGGATTATGCTGAGTGCCGTCTTCATAGTCGAAAAAAAGACTTTTATAAGGTTCAGCTTTTCCCCA
CACCATCGACACCTTGAAGCTTTGTCGCAAGCCTTGACGAGACTCTCTGCCTGACAAGTGGAATAATCTGAAATCAACCTGAGTCCGATTCTGTAATCGG
ACTTATAAGTCATATCCGCTCCATAAAAATGGACGTGATAATCAGACCTGAGCATGCCGAAATCAAGGCTTCGGACAGGATTATAACTCTACATCAAGCG
GTCATTCGATGATAGACATTAGTTGGAGGCTTCAGATTGTCCCCATATCTGTTTTGATAACCTGAAATGAATCCACTATGAATAATGTAGG
CGTTCTCATGTGCAAAGATACAACAAATAACGGAGTCAGTCAAGAGAAAAATCTTTTTTCTTTTCAAGACGTGCTTCCTGACAGGAAAATTCAGGTCGAT
TTCAATGCCCCGGACATCTCGTCCAATGGAGGACTGGTGCTTGTCGGTCTAATGAAAGACAGCATAGCGCGAAAGATAGCGCGCCTAATTCCGGATTATC
GAAATCAGCTTTTCGTACAGCATTCCTACGAAGAGATGGTCTGCCAGCGTGTCGGACAGATAATGTGCGGCTACGAGGATGCCAACGACTGCGACCGCCT
GCGCCACGACAGTGCCCTTAAGATGAGCGTGGGCCGCAAGGCATCGGATCCCGGCCTGTGCTCACAACCGACGATGACACGGCTTGAGAATCATATTGAC
AAAAGGACCTTATGGAAAATAGCAGAACTGTTTGTCAAGGACTACATCTCATCCTTCGACAAAGCTCCGCGTAAGATTATTCTTGACGTTGACGATACAA
ATGCCAACACATACGGGGCGCAGCAGCTGTCGCTGTTCAATGATTACTATGACGAATACTGCTACATGCCGATGGTTATTTTCGACGGTATGAACGGCAA
GCTGATACTTCCTCTACTGAGACCGGGACGACGCAACAAGTCGCTGAACATCTTCGGTATACTGCGCAGAGTCATTGAATACATCCATAAGGAATGGCCT
CACACAATAATAGAACTCCGCGGGGACAGTCATTTCTGCAGCCATGAGTTTATGGACTGGGTCAAGACACATCTTTATGTGAGATTTATCACAGGGCTGT
CGGGCAATCCTGCGCTTATGAAGAAAATCGACAAGCAATTGCGCCGTGCCAAGGGGGATTTCGAACTTCACCATGAGGATGTACGCCGTTACTACAGCTT
TGAGTACAAAGCCAAATCATGGAAATACAGACAGAGGGTGATTGCAAAAATCGAAGTCTCCGACAAGGGTGTAAACGTCCGCTTCATAGTCACAAGCAAC
CGTAACAACAAGCCCGAGACAGTATATCGACGTTACTGTAAGCGCGGCACAATGGAGCTATGGATAAAAGACCTGAAGTATTTTCGAGCCGACAGGATGT
CGTGCAGTTCTTTCAGAGCCAATATGTTCCGGCTGTTTCTATATGGCGCGGCATATGTGACCGCATACCGTCTCAGGTCGAAGGCTTTCTCCAATACAGA
GGTCGGCGCCTTCACGATGGACAGCTTCATGAAGCGGATTATGCTGAGTGCCGTCTTCATAGTCGAAAAAAAGACTTTTATAAGGTTCAGCTTTTCCCCA
CACCATCGACACCTTGAAGCTTTGTCGCAAGCCTTGACGAGACTCTCTGCCTGACAAGTGGAATAATCTGAAATCAACCTGAGTCCGATTCTGTAATCGG
ACTTATAAGTCATATCCGCTCCATAAAAATGGACGTGATAATCAGACCTGAGCATGCCGAAATCAAGGCTTCGGACAGGATTATAACTCTACATCAAGCG
GTCATTCGATGATAGACATTAGTTGGAGGCTTCAGATTGTCCCCATATCTGTTTTGATAACCTGAAATGAATCCACTATGAATAATGTAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1347 bp | 448 aa | 108 | 1454 | + | No |
Chemistry : DDE
ORF sequence :
MCKDTTNNGVSQEKNLFSFQDVLPDRKIQVDFNAPDISSNGGLVLVGLMKDSIARKIARLIPDYRNQLFVQHSYEEMVCQRVGQIMCGYEDANDCDRLRH
DSALKMSVGRKASDPGLCSQPTMTRLENHIDKRTLWKIAELFVKDYISSFDKAPRKIILDVDDTNANTYGAQQLSLFNDYYDEYCYMPMVIFDGMNGKLI
LPLLRPGRRNKSLNIFGILRRVIEYIHKEWPHTIIELRGDSHFCSHEFMDWVKTHLYVRFITGLSGNPALMKKIDKQLRRAKGDFELHHEDVRRYYSFEY
KAKSWKYRQRVIAKIEVSDKGVNVRFIVTSNRNNKPETVYRRYCKRGTMELWIKDLKYFRADRMSCSSFRANMFRLFLYGAAYVTAYRLRSKAFSNTEVG
AFTMDSFMKRIMLSAVFIVEKKTFIRFSFSPHHRHLEALSQALTRLSA
DSALKMSVGRKASDPGLCSQPTMTRLENHIDKRTLWKIAELFVKDYISSFDKAPRKIILDVDDTNANTYGAQQLSLFNDYYDEYCYMPMVIFDGMNGKLI
LPLLRPGRRNKSLNIFGILRRVIEYIHKEWPHTIIELRGDSHFCSHEFMDWVKTHLYVRFITGLSGNPALMKKIDKQLRRAKGDFELHHEDVRRYYSFEY
KAKSWKYRQRVIAKIEVSDKGVNVRFIVTSNRNNKPETVYRRYCKRGTMELWIKDLKYFRADRMSCSSFRANMFRLFLYGAAYVTAYRLRSKAFSNTEVG
AFTMDSFMKRIMLSAVFIVEKKTFIRFSFSPHHRHLEALSQALTRLSA
Blast result :
Comments
IS1188 is an isoform of IS616.
References
1] Collatz,E.Direct Submission Genbank (2000).