IS1188

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform IS616Synonym(s)
Accession numberTranspositionOriginHost
AJ277413 ND Bacteroides fragilis
Bacteroides fragilis
DNA section
IS Length : 1691 bp

Ends


IR Length : 14/17

IRL : CCTGAATAATTCATAGTCTCCACAAAAAAGAGAACGCCCTTCTTGTATAT
IRR : CCTACATTATTCATAGTGGATTCATTTCAGGTTATCAAAACAGATATGGG

Insertion site


Left flankDirect repeatRight flankDR Length
TGTATTCAAACTAACATCTATATC4

DNA sequence

CCTGAATAATTCATAGTCTCCACAAAAAAGAGAACGCCCTTCTTGTATATTTGCAAGAAAAGCATTAACTTTAAGGTGTTAAAAATAAACTTAATACCGG
CGTTCTCATGTGCAAAGATACAACAAATAACGGAGTCAGTCAAGAGAAAAATCTTTTTTCTTTTCAAGACGTGCTTCCTGACAGGAAAATTCAGGTCGAT
TTCAATGCCCCGGACATCTCGTCCAATGGAGGACTGGTGCTTGTCGGTCTAATGAAAGACAGCATAGCGCGAAAGATAGCGCGCCTAATTCCGGATTATC
GAAATCAGCTTTTCGTACAGCATTCCTACGAAGAGATGGTCTGCCAGCGTGTCGGACAGATAATGTGCGGCTACGAGGATGCCAACGACTGCGACCGCCT
GCGCCACGACAGTGCCCTTAAGATGAGCGTGGGCCGCAAGGCATCGGATCCCGGCCTGTGCTCACAACCGACGATGACACGGCTTGAGAATCATATTGAC
AAAAGGACCTTATGGAAAATAGCAGAACTGTTTGTCAAGGACTACATCTCATCCTTCGACAAAGCTCCGCGTAAGATTATTCTTGACGTTGACGATACAA
ATGCCAACACATACGGGGCGCAGCAGCTGTCGCTGTTCAATGATTACTATGACGAATACTGCTACATGCCGATGGTTATTTTCGACGGTATGAACGGCAA
GCTGATACTTCCTCTACTGAGACCGGGACGACGCAACAAGTCGCTGAACATCTTCGGTATACTGCGCAGAGTCATTGAATACATCCATAAGGAATGGCCT
CACACAATAATAGAACTCCGCGGGGACAGTCATTTCTGCAGCCATGAGTTTATGGACTGGGTCAAGACACATCTTTATGTGAGATTTATCACAGGGCTGT
CGGGCAATCCTGCGCTTATGAAGAAAATCGACAAGCAATTGCGCCGTGCCAAGGGGGATTTCGAACTTCACCATGAGGATGTACGCCGTTACTACAGCTT
TGAGTACAAAGCCAAATCATGGAAATACAGACAGAGGGTGATTGCAAAAATCGAAGTCTCCGACAAGGGTGTAAACGTCCGCTTCATAGTCACAAGCAAC
CGTAACAACAAGCCCGAGACAGTATATCGACGTTACTGTAAGCGCGGCACAATGGAGCTATGGATAAAAGACCTGAAGTATTTTCGAGCCGACAGGATGT
CGTGCAGTTCTTTCAGAGCCAATATGTTCCGGCTGTTTCTATATGGCGCGGCATATGTGACCGCATACCGTCTCAGGTCGAAGGCTTTCTCCAATACAGA
GGTCGGCGCCTTCACGATGGACAGCTTCATGAAGCGGATTATGCTGAGTGCCGTCTTCATAGTCGAAAAAAAGACTTTTATAAGGTTCAGCTTTTCCCCA
CACCATCGACACCTTGAAGCTTTGTCGCAAGCCTTGACGAGACTCTCTGCCTGACAAGTGGAATAATCTGAAATCAACCTGAGTCCGATTCTGTAATCGG
ACTTATAAGTCATATCCGCTCCATAAAAATGGACGTGATAATCAGACCTGAGCATGCCGAAATCAAGGCTTCGGACAGGATTATAACTCTACATCAAGCG
GTCATTCGATGATAGACATTAGTTGGAGGCTTCAGATTGTCCCCATATCTGTTTTGATAACCTGAAATGAATCCACTATGAATAATGTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1347 bp448 aa1081454+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MCKDTTNNGVSQEKNLFSFQDVLPDRKIQVDFNAPDISSNGGLVLVGLMKDSIARKIARLIPDYRNQLFVQHSYEEMVCQRVGQIMCGYEDANDCDRLRH
DSALKMSVGRKASDPGLCSQPTMTRLENHIDKRTLWKIAELFVKDYISSFDKAPRKIILDVDDTNANTYGAQQLSLFNDYYDEYCYMPMVIFDGMNGKLI
LPLLRPGRRNKSLNIFGILRRVIEYIHKEWPHTIIELRGDSHFCSHEFMDWVKTHLYVRFITGLSGNPALMKKIDKQLRRAKGDFELHHEDVRRYYSFEY
KAKSWKYRQRVIAKIEVSDKGVNVRFIVTSNRNNKPETVYRRYCKRGTMELWIKDLKYFRADRMSCSSFRANMFRLFLYGAAYVTAYRLRSKAFSNTEVG
AFTMDSFMKRIMLSAVFIVEKKTFIRFSFSPHHRHLEALSQALTRLSA

 

Blast result :
Comments
IS1188 is an isoform of IS616.
References
1] Collatz,E.Direct Submission Genbank (2000).