IS1167
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
M36180 | ND | Streptococcus pneumoniae | Streptococcus sanguis Streptococcus pneumoniae CP1200 Steptococcus agalactiae |
DNA section
IS Length : 1435 bp
Ends
IR Length : 17/24
IRL : GGTTCTATAATATTTGTAGTGGGTAAATCCCCTATGGATATTATGGAGCC
IRR : GGCTCTTTGTCAACTGTAGTGGGTTGAAAAAAAGCTAAGCTCGAGAAAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTTCTATAATATTTGTAGTGGGTAAATCCCCTATGGATATTATGGAGCCTATTTTTGTGTAGAAAAAAAGTCCCATAAGATCTATAATGAAAAGCGATC
AAACAACTCATTAGAAAGATTCATATGGAACAATTACATTTTATCACAAAATTACTAGACATTAAAGACCCTAATATCCAGATTTTAGACATCATCAATA
AGGATACACACAAGGAAATCATCGCCAAACTGGACTACGACGCCCCATCTTGCCCTGAGTGCGGAAACCAATTGAAGAAATATGACTTTCAAAAACCTTC
TAAAATTCCTTATCTTGAAACGACTGGTATGCCTACTAGAATTCTCCTTAGAAAGCGTCGATTCAAGTGCTATCACTGTTCAAAAATGATGGTCGCTGAA
ACTTCTATCGTCAAGAAGAATCACCAAATCCCTCGTATCATCAACCAAAAGATTGCTCAAAAGTTAATTGAAAAGATTTCTATGACTGATATTGCCCATC
AGCTTTCCATCTCAACTTCAACTGTTATTCGTAAGCTCAATGATTTTCACTTTAAACATGATTTTTCGCGTCTTCCTGAGATTATGTCTTGGGAGGTTGA
AACAGTCCGGGGAGTGACTGTTTCAATCGGGAGATGGAGATGAGCTTCATTGCGCAAGATTTTGAAAAGCTCGATATCATCACTGTTCTTGAGGGTAGAA
CACAAGCTATCATTCGAAATCACTTTCTTCGCTACGATAGAGTTGTCCGATGTCGCGTCAAAATTATTACTATGGATATGTTTAGTCCTTACTATGACTT
AGCTAGACAACTTTTCCCGTGTGCTAAAATCGTGTTGGATCGCTTTCACATTGTACAACATCTTAGCCGTGCTATGAGTCGTGTGCGTGTTCAAATCATG
AATCAATTGGATCGAAAGTCTCATGAATACAAGGCTATCAAGCGCTACTGGAAGCTCATACAACAGGATAGTCGTAAACTCAGCGATAAACATTTTTATC
GCCCTACTTTTCGTATGCATTTAACCAATAAAGAGATTTTAGACAAGCTTTTGAGCTATTCACAAGACTTGAAACATCACTATCAGCTCTATCAACTCTT
GCTGTTTCACTTTCAGAATAAGGAACCAGAGAAATTTTTCGGACTTATTGAGGACAATCTTAAGCAGGTTCATCCTCTTTTTCAGACTGTCTTTAAAACC
TTTCTAAAGGACAAAGAGAAAATCGTCAACGCCCTTCAACTACCCTATTCAAACGCCAAATTGGAAGCGACCAATAATCTCATCAAACTTATCAAGCGCA
ATGCCTTTGGTTTTCGGAACTTTGAAAACTTCAAAAAACGGATTTTTATCGCTCTGAATATCAAAAAAGAAAGGACAAAATTTGTCCTTTCTCGAGCTTA
GCTTTTTTTCAACCCACTACAGTTGACAAAGAGCC
AAACAACTCATTAGAAAGATTCATATGGAACAATTACATTTTATCACAAAATTACTAGACATTAAAGACCCTAATATCCAGATTTTAGACATCATCAATA
AGGATACACACAAGGAAATCATCGCCAAACTGGACTACGACGCCCCATCTTGCCCTGAGTGCGGAAACCAATTGAAGAAATATGACTTTCAAAAACCTTC
TAAAATTCCTTATCTTGAAACGACTGGTATGCCTACTAGAATTCTCCTTAGAAAGCGTCGATTCAAGTGCTATCACTGTTCAAAAATGATGGTCGCTGAA
ACTTCTATCGTCAAGAAGAATCACCAAATCCCTCGTATCATCAACCAAAAGATTGCTCAAAAGTTAATTGAAAAGATTTCTATGACTGATATTGCCCATC
AGCTTTCCATCTCAACTTCAACTGTTATTCGTAAGCTCAATGATTTTCACTTTAAACATGATTTTTCGCGTCTTCCTGAGATTATGTCTTGGGAGGTTGA
AACAGTCCGGGGAGTGACTGTTTCAATCGGGAGATGGAGATGAGCTTCATTGCGCAAGATTTTGAAAAGCTCGATATCATCACTGTTCTTGAGGGTAGAA
CACAAGCTATCATTCGAAATCACTTTCTTCGCTACGATAGAGTTGTCCGATGTCGCGTCAAAATTATTACTATGGATATGTTTAGTCCTTACTATGACTT
AGCTAGACAACTTTTCCCGTGTGCTAAAATCGTGTTGGATCGCTTTCACATTGTACAACATCTTAGCCGTGCTATGAGTCGTGTGCGTGTTCAAATCATG
AATCAATTGGATCGAAAGTCTCATGAATACAAGGCTATCAAGCGCTACTGGAAGCTCATACAACAGGATAGTCGTAAACTCAGCGATAAACATTTTTATC
GCCCTACTTTTCGTATGCATTTAACCAATAAAGAGATTTTAGACAAGCTTTTGAGCTATTCACAAGACTTGAAACATCACTATCAGCTCTATCAACTCTT
GCTGTTTCACTTTCAGAATAAGGAACCAGAGAAATTTTTCGGACTTATTGAGGACAATCTTAAGCAGGTTCATCCTCTTTTTCAGACTGTCTTTAAAACC
TTTCTAAAGGACAAAGAGAAAATCGTCAACGCCCTTCAACTACCCTATTCAAACGCCAAATTGGAAGCGACCAATAATCTCATCAAACTTATCAAGCGCA
ATGCCTTTGGTTTTCGGAACTTTGAAAACTTCAAAAAACGGATTTTTATCGCTCTGAATATCAAAAAAGAAAGGACAAAATTTGTCCTTTCTCGAGCTTA
GCTTTTTTTCAACCCACTACAGTTGACAAAGAGCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
519 bp | 172 aa | 125 | 643 | + | No |
Description : First part of the transposase
ORF sequence :
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
762 bp | 253 aa | 640 | 1401 | + | No |
Description : Second part of the transposase
ORF sequence :
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1277 bp | 425 aa | 125 | 1401 | + | Yes |
Chemistry : Unknow
ORF sequence :
MEQLHFITKLLDIKDPNIQILDIINKDTHKEIIAKLDYDAPSCPECGNQLKKYDFQKPSKIPYLETTGMPTRILLRKRRFKCYHCSKMMVAETSIVKKNH
QIPRIINQKIAQKLIEKISMTDIAHQLSISTSTVIRKLNDFHFKHDFSRLPEIMSWEVETVRGVTVSIGRWRMSFIAQDFEKLDIITVLEGRTQAIIRNH
FLRYDRVVRCRVKIITMDMFSPYYDLARQLFPCAKIVLDRFHIVQHLSRAMSRVRVQIMNQLDRKSHEYKAIKRYWKLIQQDSRKLSDKHFYRPTFRMHL
TNKEILDKLLSYSQDLKHHYQLYQLLLFHFQNKEPEKFFGLIEDNLKQVHPLFQTVFKTFLKDKEKIVNALQLPYSNAKLEATNNLIKLIKRNAFGFRNF
ENFKKRIFIALNIKKERTKFVLSRA
QIPRIINQKIAQKLIEKISMTDIAHQLSISTSTVIRKLNDFHFKHDFSRLPEIMSWEVETVRGVTVSIGRWRMSFIAQDFEKLDIITVLEGRTQAIIRNH
FLRYDRVVRCRVKIITMDMFSPYYDLARQLFPCAKIVLDRFHIVQHLSRAMSRVRVQIMNQLDRKSHEYKAIKRYWKLIQQDSRKLSDKHFYRPTFRMHL
TNKEILDKLLSYSQDLKHHYQLYQLLLFHFQNKEPEKFFGLIEDNLKQVHPLFQTVFKTFLKDKEKIVNALQLPYSNAKLEATNNLIKLIKRNAFGFRNF
ENFKKRIFIALNIKKERTKFVLSRA
Blast result :
Comments
References