IS1167

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
M36180 ND Streptococcus pneumoniae
Streptococcus sanguis
Streptococcus pneumoniae CP1200
Steptococcus agalactiae
DNA section
IS Length : 1435 bp

Ends


IR Length : 17/24

IRL : GGTTCTATAATATTTGTAGTGGGTAAATCCCCTATGGATATTATGGAGCC
IRR : GGCTCTTTGTCAACTGTAGTGGGTTGAAAAAAAGCTAAGCTCGAGAAAGG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGTTCTATAATATTTGTAGTGGGTAAATCCCCTATGGATATTATGGAGCCTATTTTTGTGTAGAAAAAAAGTCCCATAAGATCTATAATGAAAAGCGATC
AAACAACTCATTAGAAAGATTCATATGGAACAATTACATTTTATCACAAAATTACTAGACATTAAAGACCCTAATATCCAGATTTTAGACATCATCAATA
AGGATACACACAAGGAAATCATCGCCAAACTGGACTACGACGCCCCATCTTGCCCTGAGTGCGGAAACCAATTGAAGAAATATGACTTTCAAAAACCTTC
TAAAATTCCTTATCTTGAAACGACTGGTATGCCTACTAGAATTCTCCTTAGAAAGCGTCGATTCAAGTGCTATCACTGTTCAAAAATGATGGTCGCTGAA
ACTTCTATCGTCAAGAAGAATCACCAAATCCCTCGTATCATCAACCAAAAGATTGCTCAAAAGTTAATTGAAAAGATTTCTATGACTGATATTGCCCATC
AGCTTTCCATCTCAACTTCAACTGTTATTCGTAAGCTCAATGATTTTCACTTTAAACATGATTTTTCGCGTCTTCCTGAGATTATGTCTTGGGAGGTTGA
AACAGTCCGGGGAGTGACTGTTTCAATCGGGAGATGGAGATGAGCTTCATTGCGCAAGATTTTGAAAAGCTCGATATCATCACTGTTCTTGAGGGTAGAA
CACAAGCTATCATTCGAAATCACTTTCTTCGCTACGATAGAGTTGTCCGATGTCGCGTCAAAATTATTACTATGGATATGTTTAGTCCTTACTATGACTT
AGCTAGACAACTTTTCCCGTGTGCTAAAATCGTGTTGGATCGCTTTCACATTGTACAACATCTTAGCCGTGCTATGAGTCGTGTGCGTGTTCAAATCATG
AATCAATTGGATCGAAAGTCTCATGAATACAAGGCTATCAAGCGCTACTGGAAGCTCATACAACAGGATAGTCGTAAACTCAGCGATAAACATTTTTATC
GCCCTACTTTTCGTATGCATTTAACCAATAAAGAGATTTTAGACAAGCTTTTGAGCTATTCACAAGACTTGAAACATCACTATCAGCTCTATCAACTCTT
GCTGTTTCACTTTCAGAATAAGGAACCAGAGAAATTTTTCGGACTTATTGAGGACAATCTTAAGCAGGTTCATCCTCTTTTTCAGACTGTCTTTAAAACC
TTTCTAAAGGACAAAGAGAAAATCGTCAACGCCCTTCAACTACCCTATTCAAACGCCAAATTGGAAGCGACCAATAATCTCATCAAACTTATCAAGCGCA
ATGCCTTTGGTTTTCGGAACTTTGAAAACTTCAAAAAACGGATTTTTATCGCTCTGAATATCAAAAAAGAAAGGACAAAATTTGTCCTTTCTCGAGCTTA
GCTTTTTTTCAACCCACTACAGTTGACAAAGAGCC
Recoding section
  • Recoding by frameshift
  • Frame
  • Type
  • Experimentally demonstrated

Stimulators :

  • Shine-Dalgarno sequence :
  • Secondary structure :

Recoding motif :

Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
519 bp172 aa125643+No
ORF function : Transposase
Description : First part of the transposase

ORF sequence :

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
762 bp253 aa6401401+No
ORF function : Transposase
Description : Second part of the transposase

ORF sequence :

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1277 bp425 aa1251401+Yes
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MEQLHFITKLLDIKDPNIQILDIINKDTHKEIIAKLDYDAPSCPECGNQLKKYDFQKPSKIPYLETTGMPTRILLRKRRFKCYHCSKMMVAETSIVKKNH
QIPRIINQKIAQKLIEKISMTDIAHQLSISTSTVIRKLNDFHFKHDFSRLPEIMSWEVETVRGVTVSIGRWRMSFIAQDFEKLDIITVLEGRTQAIIRNH
FLRYDRVVRCRVKIITMDMFSPYYDLARQLFPCAKIVLDRFHIVQHLSRAMSRVRVQIMNQLDRKSHEYKAIKRYWKLIQQDSRKLSDKHFYRPTFRMHL
TNKEILDKLLSYSQDLKHHYQLYQLLLFHFQNKEPEKFFGLIEDNLKQVHPLFQTVFKTFLKDKEKIVNALQLPYSNAKLEATNNLIKLIKRNAFGFRNF
ENFKKRIFIALNIKKERTKFVLSRA

 

Blast result :
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References