IS1138
- Family IS3
- Group IS150
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Z16416 | Y | Mycoplasma pulmonis | Mycoplasma pulmonis UAB5782C Mycoplasma pulmonis KD735-26 Mycoplasma pulmonis 7MCA1 Mycoplasma pulmonis JB Mycoplasma pulmonis NelsonC Mycoplasma pulmonis PG34 |
DNA section
IS Length : 1288 bp
Ends
IR Length : 18
IRL : TAAACTGGGACAAAAAAATAAAAAACACTTTTTAAAATATACTTTAAATA
IRR : TAAACTAGGACAAAAAAAGTGACTATTTAAAAAACACTTAGAACATCTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | TTG | NNNNNNNNNN | 3 |
DNA sequence
TAAACTGGGACAAAAAAATAAAAAACACTTTTTAAAATATACTTTAAATAGGAGTGTTTATGAAACAACTAAAACCAGAACAATGAAAGAAATGATTTTC
ATTATATGAAGAATTTTATGATGGAAAAATTAATATAAAAAAATATATATTTTTAGTAAACAAAAATATTGGTAAAGAGTGAAAAAATACATATGTAAAA
TCTTGATTTTTCAAAAAATATTCTGCTTTTCAAAAAGATGAACAATCTTTAATTTCACAAACTGGCAAATCTACAGCTAACAAAAAAAATAACGGTAGAC
CACCAAAAAGAAAAGAAGTTAATGAATATACAAGAGAAGAATTAGAAGAGATTGTTAAAATTTATAGAATAATTTTTGATGACATTAGTGAAAAAGAAAT
TCGAAAAAAAATTAAAGAACATAAAGATAAAGAAAAAATATTAACTAAAATTTCATGAAAAGAATTTCTCTTTTCAAAATCAACATATTATTCTTGAAAA
AAACCTAAACTTGCAGAGCCGAAAAAAGATCAAGAAATAGAAGAAATTATTAGAAAATCATTTCATGAAAACAAAGGTATATTTGGTAGAAAAAGATTAG
AAATTTATATTCAAAATAAATATAAAAGGTATATAAACTATCGAAAAATAGGTAGAATTTTGCTTAAATTAAATCTTTTTTGCAAAATTAGAAGAGCAAA
AAGAAAAAATGAAATTAAAAATCTTAATACTAAATATCAAAATCTAATTCAAAGAGACTACAATGGCAAATTTAACAACATAGTTGCCACTGATGTAACT
TATATTCCAAGCCCCAAAGATGCAATTAACAATCATGTTTATTTATCGATTGCAATTCATCATCAAAGCAAGAAAATAATTAATTGAAATCTAAGTAAAA
GAAATGATGTTAAGTTAGTTTTAGATCATATTTCTAAAATCAAATTTGATAAAGAGTGAATAATTCACTCAGATCATGGAAGTCAATATTCATCAAATCA
GTATAGTGAAATTATTAAAGAAAACAATGGGATAATTTCAATGAGTAGAATCGCAAATTCACTTAATAATCGAGAAGCAGAATATTTCTTTTCAAATATC
AAAAGTGAGTGCTTAAATGATCTAAAAATTTCAAAATTATCATTCAAAGAATTGCAAGAAATTATTCAAAATTATATTGACTGATACAATAATGAAAGAT
TACAATCAATCTTAGAATGAAAAACACCTCAACAAAGCTGAGATGTTCTAAGTGTTTTTTAAATAGTCACTTTTTTTGTCCTAGTTTA
ATTATATGAAGAATTTTATGATGGAAAAATTAATATAAAAAAATATATATTTTTAGTAAACAAAAATATTGGTAAAGAGTGAAAAAATACATATGTAAAA
TCTTGATTTTTCAAAAAATATTCTGCTTTTCAAAAAGATGAACAATCTTTAATTTCACAAACTGGCAAATCTACAGCTAACAAAAAAAATAACGGTAGAC
CACCAAAAAGAAAAGAAGTTAATGAATATACAAGAGAAGAATTAGAAGAGATTGTTAAAATTTATAGAATAATTTTTGATGACATTAGTGAAAAAGAAAT
TCGAAAAAAAATTAAAGAACATAAAGATAAAGAAAAAATATTAACTAAAATTTCATGAAAAGAATTTCTCTTTTCAAAATCAACATATTATTCTTGAAAA
AAACCTAAACTTGCAGAGCCGAAAAAAGATCAAGAAATAGAAGAAATTATTAGAAAATCATTTCATGAAAACAAAGGTATATTTGGTAGAAAAAGATTAG
AAATTTATATTCAAAATAAATATAAAAGGTATATAAACTATCGAAAAATAGGTAGAATTTTGCTTAAATTAAATCTTTTTTGCAAAATTAGAAGAGCAAA
AAGAAAAAATGAAATTAAAAATCTTAATACTAAATATCAAAATCTAATTCAAAGAGACTACAATGGCAAATTTAACAACATAGTTGCCACTGATGTAACT
TATATTCCAAGCCCCAAAGATGCAATTAACAATCATGTTTATTTATCGATTGCAATTCATCATCAAAGCAAGAAAATAATTAATTGAAATCTAAGTAAAA
GAAATGATGTTAAGTTAGTTTTAGATCATATTTCTAAAATCAAATTTGATAAAGAGTGAATAATTCACTCAGATCATGGAAGTCAATATTCATCAAATCA
GTATAGTGAAATTATTAAAGAAAACAATGGGATAATTTCAATGAGTAGAATCGCAAATTCACTTAATAATCGAGAAGCAGAATATTTCTTTTCAAATATC
AAAAGTGAGTGCTTAAATGATCTAAAAATTTCAAAATTATCATTCAAAGAATTGCAAGAAATTATTCAAAATTATATTGACTGATACAATAATGAAAGAT
TACAATCAATCTTAGAATGAAAAACACCTCAACAAAGCTGAGATGTTCTAAGTGTTTTTTAAATAGTCACTTTTTTTGTCCTAGTTTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1203 bp | 400 aa | 60 | 1262 | + | No |
Chemistry : DDE
ORF sequence :
MKQLKPEQWKKWFSLYEEFYDGKINIKKYIFLVNKNIGKEWKNTYVKSWFFKKYSAFQKDEQSLISQTGKSTANKKNNGRPPKRKEVNEYTREELEEIVK
IYRIIFDDISEKEIRKKIKEHKDKEKILTKISWKEFLFSKSTYYSWKKPKLAEPKKDQEIEEIIRKSFHENKGIFGRKRLEIYIQNKYKRYINYRKIGRI
LLKLNLFCKIRRAKRKNEIKNLNTKYQNLIQRDYNGKFNNIVATDVTYIPSPKDAINNHVYLSIAIHHQSKKIINWNLSKRNDVKLVLDHISKIKFDKEW
IIHSDHGSQYSSNQYSEIIKENNGIISMSRIANSLNNREAEYFFSNIKSECLNDLKISKLSFKELQEIIQNYIDWYNNERLQSILEWKTPQQSWDVLSVF
IYRIIFDDISEKEIRKKIKEHKDKEKILTKISWKEFLFSKSTYYSWKKPKLAEPKKDQEIEEIIRKSFHENKGIFGRKRLEIYIQNKYKRYINYRKIGRI
LLKLNLFCKIRRAKRKNEIKNLNTKYQNLIQRDYNGKFNNIVATDVTYIPSPKDAINNHVYLSIAIHHQSKKIINWNLSKRNDVKLVLDHISKIKFDKEW
IIHSDHGSQYSSNQYSEIIKENNGIISMSRIANSLNNREAEYFFSNIKSECLNDLKISKLSFKELQEIIQNYIDWYNNERLQSILEWKTPQQSWDVLSVF
Blast result :
Comments
Note that the single IS1138 ORF contains 11 UGA codons, encoding tryptophan in this organism. IS1138 participates to the high-frequency chromosome rearrangements observed in Mycoplasma pulmonis.
References
1] Bhugra, B., and Dybvig, K. (1992) Mol. Microbiol. 6, 1149-1154.
2] Bhugra, B., and Dybvig, K. (1993) Mol. Microbiol. 7, 577-584.
2] Bhugra, B., and Dybvig, K. (1993) Mol. Microbiol. 7, 577-584.