IS1086
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
X58441 | Y | Ralstonia eutropha | Ralstonia eutropha CH34 Ralstonia eutropha AE104 |
DNA section
IS Length : 1106 bp
Ends
IR Length : 22/28
IRL : GGCGGCCTCAAATCTGAAGTGCAACACCTTGCCATTCGGTAAGGTGTGGT
IRR : GGCGGTTTCAAGTGCGAAGCGCAACACCCCTTGGTTATTGAACAGGAAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACAGTATTAA | CCT | TTACTACCGC | 3 |
ACAGTATTAA | CCT | TTACTACCGC | 3 |
CCTTCTTACT | ACA | CGAAAACGGT | 3 |
CTAAATATT | GGA | GGAGATGTGGCAA | 3 |
DNA sequence
GGCGGCCTCAAATCTGAAGTGCAACACCTTGCCATTCGGTAAGGTGTGGTGAATGACGAGAACGAAGTACCAACAACTACAACCCGAAGAACGCATGCGC
ATCGAGATTTGGAAGGCAGAAGATGTCAGCCTGCGGGCCATGGCCCGCAGGCTTGGCCGCGCGCCTTCGACACTGATGCGTGAGCTTCGCCGCAATGCCA
CCGCCCGTGGCGGCTATGGCGCAATGAGCGCACAAGCCTGCCGTACGCAACGCCTCAAGGCCAGCCGTCCGGTCGCTAAGCTCGCTCCTGATGGCGTATT
GTGGGGCGTGGTGCGCCACTTCCTCGATCAGAAGTGGTCGCCCCAGGAAATCTCCGGTACGCTCAAGCGGGCCTTTCCTGACCAACCCGACCTCAACGTG
TCCCACGAGACCATCTACAACGCCATCTACGCATACCCGCGGGGTGAGCTGCGCCGCCAGCTCATCGCCTGCTTGCGACAGGCCCGAACCAAGCGTCTGC
CGCGCTCGCGTGGAACCGACCGGCGCGGCCAGATTCCCGACATGGTCAGCATTCACGTGCGCCCGCCCGAGGTGAACGACAGGCTGATGCCCGGGCACTG
GGAGGGCGACCTCATCAAGGGGGCGGGCAACCAATCCGCCGTAGGCGTGCTGGTTGAGCGCATGAGCCGCGCCGTACTGCTGGTCAAGATGCCAGACGCC
ACCGCTGCATCGGCTCTGGCCGGCTTTACCGGGAAGCTGCAATCCCTGGTGGCGCCGCTGCGCCAGACCCTGACCTACGACCAGGGTCGAGAGATGGCCA
GGCACGCCGAACTGAGCGCCGCCACTGGCGTGCGAGTGTACTTCTGCGACCCGCACAGCCCCTGGCAGCGCGGCACCTGTGAGAACACCAATGGTCTGCT
GCGCCAGTACTTACCCAAGGGCACCGACCTGTCCGTCTACTCGCAGGAGGAACTTGACGCCATCGCCGACAGCCTCAACGGCCGCCCGCGCAAAACCCTG
AACTGGCACTCCCCGCTACAAGTCCTCGCTCAGGTTCTGGCCAATCCCACGGACCGGCTTCCTGTTCAATAACCAAGGGGTGTTGCGCTTCGCACTTGAA
ACCGCC
ATCGAGATTTGGAAGGCAGAAGATGTCAGCCTGCGGGCCATGGCCCGCAGGCTTGGCCGCGCGCCTTCGACACTGATGCGTGAGCTTCGCCGCAATGCCA
CCGCCCGTGGCGGCTATGGCGCAATGAGCGCACAAGCCTGCCGTACGCAACGCCTCAAGGCCAGCCGTCCGGTCGCTAAGCTCGCTCCTGATGGCGTATT
GTGGGGCGTGGTGCGCCACTTCCTCGATCAGAAGTGGTCGCCCCAGGAAATCTCCGGTACGCTCAAGCGGGCCTTTCCTGACCAACCCGACCTCAACGTG
TCCCACGAGACCATCTACAACGCCATCTACGCATACCCGCGGGGTGAGCTGCGCCGCCAGCTCATCGCCTGCTTGCGACAGGCCCGAACCAAGCGTCTGC
CGCGCTCGCGTGGAACCGACCGGCGCGGCCAGATTCCCGACATGGTCAGCATTCACGTGCGCCCGCCCGAGGTGAACGACAGGCTGATGCCCGGGCACTG
GGAGGGCGACCTCATCAAGGGGGCGGGCAACCAATCCGCCGTAGGCGTGCTGGTTGAGCGCATGAGCCGCGCCGTACTGCTGGTCAAGATGCCAGACGCC
ACCGCTGCATCGGCTCTGGCCGGCTTTACCGGGAAGCTGCAATCCCTGGTGGCGCCGCTGCGCCAGACCCTGACCTACGACCAGGGTCGAGAGATGGCCA
GGCACGCCGAACTGAGCGCCGCCACTGGCGTGCGAGTGTACTTCTGCGACCCGCACAGCCCCTGGCAGCGCGGCACCTGTGAGAACACCAATGGTCTGCT
GCGCCAGTACTTACCCAAGGGCACCGACCTGTCCGTCTACTCGCAGGAGGAACTTGACGCCATCGCCGACAGCCTCAACGGCCGCCCGCGCAAAACCCTG
AACTGGCACTCCCCGCTACAAGTCCTCGCTCAGGTTCTGGCCAATCCCACGGACCGGCTTCCTGTTCAATAACCAAGGGGTGTTGCGCTTCGCACTTGAA
ACCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1020 bp | 339 aa | 56 | 1075 | + | No |
Chemistry : DDE
ORF sequence :
MTRTKYQQLQPEERMRIEIWKAEDVSLRAMARRLGRAPSTLMRELRRNATARGGYGAMSAQACRTQRLKASRPVAKLAPDGVLWGVVRHFLDQKWSPQEI
SGTLKRAFPDQPDLNVSHETIYNAIYAYPRGELRRQLIACLRQARTKRLPRSRGTDRRGQIPDMVSIHVRPPEVNDRLMPGHWEGDLIKGAGNQSAVGVL
VERMSRAVLLVKMPDATAASALAGFTGKLQSLVAPLRQTLTYDQGREMARHAELSAATGVRVYFCDPHSPWQRGTCENTNGLLRQYLPKGTDLSVYSQEE
LDAIADSLNGRPRKTLNWHSPLQVLAQVLANPTDRLPVQ
SGTLKRAFPDQPDLNVSHETIYNAIYAYPRGELRRQLIACLRQARTKRLPRSRGTDRRGQIPDMVSIHVRPPEVNDRLMPGHWEGDLIKGAGNQSAVGVL
VERMSRAVLLVKMPDATAASALAGFTGKLQSLVAPLRQTLTYDQGREMARHAELSAATGVRVYFCDPHSPWQRGTCENTNGLLRQYLPKGTDLSVYSQEE
LDAIADSLNGRPRKTLNWHSPLQVLAQVLANPTDRLPVQ
Blast result :
Comments
Note that Ralstonia eutropha was formerly named Alcaligenes eutrophus. IS1086 shares 27 % identity (aa) with ORF3 (ISSc1) from Spiroplasma citri virus SpV1-R8A2B, 31 % with IS4351 and 43 % with IS30. Four insertions have been characterized in the sacB gene, three of which have duplicated three bp.
References