IS1016C
- Family IS1595
- Group IS1016
Isoform Synonym(s) ORF3/frpC, IS1016N
Accession number | Transposition | Origin | Host |
---|---|---|---|
L06299 | ND | Neisseria meningitidis | Neisseria meningitidis FAM20 |
DNA section
IS Length : 713 bp
Ends
IR Length : 19
IRL : GGGGCTGTACTAGATTAGCAGATATGTTACCCTCGAAATATGAAGATAAC
IRR : GGGGCTGTACTAGATTAGCCCTAAATTCCACACCAATCCCGCAAAATTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGGGCTGTACTAGATTAGCAGATATGTTACCCTCGAAATATGAAGATAACGCACTGCAAATTAAAGAAAAAAGTACAGAAAGAGCTGCTCCGTTTTTTTG
TACTCGAAGTTACCGCCCGTTCTGCCGCCGATATTTTGGGTATCCATCCCAATTCGGCAGCACTGTTCTACCGTAAAATCCGCACGGTTATCAACCATCA
TTTGGCCTTGGCTGCCGATGAGGTTTTTGAGGGCCCTGTCGAGCCGGACGAAAGCGATTTCGGCGGACGGCGTAAAGGCAGACGTGGTCGCGGTGCGGCA
GGAAAAGTGGTTGTCTTCGGCATTCTGAAACGCAACGGACGGGTCTATACCGTTGTGGTGGATAATGCCAAGTCTGAAACGTTACTCCCTGTCATCAAGA
AGAAAATCATGCCGGACAGCATTGTTTATACCGATAGTCTGAGCAGCTGCGACAAGTTGGACGTGAGCGGTTTTATCCATTACCGCATCAACCATTCCAA
GGAATTTGCAGACCGTCAAAACCACATTAACGGCATTGAGAACTTTTGGAATCAGGCAAAACGCGTCTTGCGCAAATACAACGAAATTGATCGTAAATCT
TTCCCGCTGTTCTTGAAAGAATGCAAATTTCGGTTTAACTTCGGCACACCGTCCCGACAGCTAAAAATTTTGCGGGATTGGTGTGGAATTTAGGGCTAAT
CTAGTACAGCCCC
TACTCGAAGTTACCGCCCGTTCTGCCGCCGATATTTTGGGTATCCATCCCAATTCGGCAGCACTGTTCTACCGTAAAATCCGCACGGTTATCAACCATCA
TTTGGCCTTGGCTGCCGATGAGGTTTTTGAGGGCCCTGTCGAGCCGGACGAAAGCGATTTCGGCGGACGGCGTAAAGGCAGACGTGGTCGCGGTGCGGCA
GGAAAAGTGGTTGTCTTCGGCATTCTGAAACGCAACGGACGGGTCTATACCGTTGTGGTGGATAATGCCAAGTCTGAAACGTTACTCCCTGTCATCAAGA
AGAAAATCATGCCGGACAGCATTGTTTATACCGATAGTCTGAGCAGCTGCGACAAGTTGGACGTGAGCGGTTTTATCCATTACCGCATCAACCATTCCAA
GGAATTTGCAGACCGTCAAAACCACATTAACGGCATTGAGAACTTTTGGAATCAGGCAAAACGCGTCTTGCGCAAATACAACGAAATTGATCGTAAATCT
TTCCCGCTGTTCTTGAAAGAATGCAAATTTCGGTTTAACTTCGGCACACCGTCCCGACAGCTAAAAATTTTGCGGGATTGGTGTGGAATTTAGGGCTAAT
CTAGTACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
654 bp | 217 aa | 40 | 693 | + | No |
Chemistry : DDE
ORF sequence :
MKITHCKLKKKVQKELLRFFVLEVTARSAADILGIHPNSAALFYRKIRTVINHHLALAADEVFEGPVEPDESDFGGRRKGRRGRGAAGKVVVFGILKRNG
RVYTVVVDNAKSETLLPVIKKKIMPDSIVYTDSLSSCDKLDVSGFIHYRINHSKEFADRQNHINGIENFWNQAKRVLRKYNEIDRKSFPLFLKECKFRFN
FGTPSRQLKILRDWCGI
RVYTVVVDNAKSETLLPVIKKKIMPDSIVYTDSLSSCDKLDVSGFIHYRINHSKEFADRQNHINGIENFWNQAKRVLRKYNEIDRKSFPLFLKECKFRFN
FGTPSRQLKILRDWCGI
Blast result :
Comments
IS1016C is 70 % identical to IS1016V6 (67 % aa). The presence of IS1016C (renamed IS1016N) has also been reported by Hilse et al. (1996): the left IR of this element was one of the preferred target of the IS5 family member IS1301. IS1016V6 and IS1016C putative transposases are 68 % identical.
References
1] Thompson, S.A., Wang, L.L., Sparling, P.F. (1993) Mol. Microbiol. 9, 85-96.
2] Kroll, J.S. (1993) Personal communication.
3] Hilse, R., Hammerschmidt, S., Bautsch, W., and Frosch, M. (1996) J. Bacteriol. 178, 2527-2532.
2] Kroll, J.S. (1993) Personal communication.
3] Hilse, R., Hammerschmidt, S., Bautsch, W., and Frosch, M. (1996) J. Bacteriol. 178, 2527-2532.