IS1016
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF319529 | ND | Neisseria gonorrhoeae | Neisseria gonorrhoeae st FA1090 |
DNA section
IS Length : 713 bp
Ends
IR Length : 14/16
IRL : GGGTCTGTACTAGATTGGCAGATATGTTACCCTCGAAATATGAAGATAAC
IRR : GTGGCTGTACTAGATTATCCCTAAATTCCACACCGATCCCGCAGGATTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGTTTCATT | ATTTTTAA | TGTCTGTGCG | 8 |
DNA sequence
GGGTCTGTACTAGATTGGCAGATATGTTACCCTCGAAATATGAAGATAACACACTGCAAATTAAAGAAAGAAGTACAGAAAGAACCGCTCCGTTCTTTTG
TACCGGAAGTTACCGCCCGTTCTGCCGCCGATATTTTGGGTATCCATCCCGATTCGGCGGCACTGTTTTACCGTAAAATCCGCACGGTTGCCAACCATCG
TTTGGCCTTGGCTGCCGATGGGGTTTTCGAGGGCCCCGCCGGGCCGGGCGGAAGCTGTTTCGGCGGACGGCGTAAAGGCAGACGCGGTCGCGGCGCGGCA
GGAAAAGCGGTTGTCTTCGGCATTCCGAAACGCAACGGGCGGGCCTATACCGTTGCCGCGGACAATGCCGAGCCTGAAACGTTGCCCCCTGCCGTCAAAA
AGAAAATCATGCCGGACGGTATTGTTTATGCCGATAGCCCGGGCAGCCGCGGCAAGTCGGACGCGGGCGGTTTTACCCGTTGCCGCATCAACCGTTCCGA
GGAATTTGCAGACCGTCGGAACCACATTAACGGCATTGGGAACTTTTGGAATCAGGCAAAACGCGCCTTGCGGAAATACAACGGAATCGATCGTAAACCT
TTCCCGCCGTTGTTGAGGGAATGCGAATTTCGACTTAACTTCGGCACACCGTCCCGGCAGCTAAAAATCCTGCGGGATCGGTGTGGAATTTAGGGATAAT
CTAGTACAGCCAC
TACCGGAAGTTACCGCCCGTTCTGCCGCCGATATTTTGGGTATCCATCCCGATTCGGCGGCACTGTTTTACCGTAAAATCCGCACGGTTGCCAACCATCG
TTTGGCCTTGGCTGCCGATGGGGTTTTCGAGGGCCCCGCCGGGCCGGGCGGAAGCTGTTTCGGCGGACGGCGTAAAGGCAGACGCGGTCGCGGCGCGGCA
GGAAAAGCGGTTGTCTTCGGCATTCCGAAACGCAACGGGCGGGCCTATACCGTTGCCGCGGACAATGCCGAGCCTGAAACGTTGCCCCCTGCCGTCAAAA
AGAAAATCATGCCGGACGGTATTGTTTATGCCGATAGCCCGGGCAGCCGCGGCAAGTCGGACGCGGGCGGTTTTACCCGTTGCCGCATCAACCGTTCCGA
GGAATTTGCAGACCGTCGGAACCACATTAACGGCATTGGGAACTTTTGGAATCAGGCAAAACGCGCCTTGCGGAAATACAACGGAATCGATCGTAAACCT
TTCCCGCCGTTGTTGAGGGAATGCGAATTTCGACTTAACTTCGGCACACCGTCCCGGCAGCTAAAAATCCTGCGGGATCGGTGTGGAATTTAGGGATAAT
CTAGTACAGCCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
654 bp | 217 aa | 40 | 693 | + | No |
Chemistry : DDE
ORF sequence :
MKITHCKLKKEVQKEPLRSFVPEVTARSAADILGIHPDSAALFYRKIRTVANHRLALAADGVFEGPAGPGGSCFGGRRKGRRGRGAAGKAVVFGIPKRNG
RAYTVAADNAEPETLPPAVKKKIMPDGIVYADSPGSRGKSDAGGFTRCRINRSEEFADRRNHINGIGNFWNQAKRALRKYNGIDRKPFPPLLRECEFRLN
FGTPSRQLKILRDRCGI
RAYTVAADNAEPETLPPAVKKKIMPDGIVYADSPGSRGKSDAGGFTRCRINRSEEFADRRNHINGIGNFWNQAKRALRKYNGIDRKPFPPLLRECEFRLN
FGTPSRQLKILRDRCGI
Blast result :
Comments
IS1016 is 80% aa similar to IS1016C.
References
1] Kahler,C.M., Blum,E., Miller,Y.K., Ryan,D., Popovic,T. and Stephens,D.S.(2001) Infect. Immun. 69 (3), 1687-1696