IS1016

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF319529 ND Neisseria gonorrhoeae
Neisseria gonorrhoeae st FA1090
DNA section
IS Length : 713 bp

Ends


IR Length : 14/16

IRL : GGGTCTGTACTAGATTGGCAGATATGTTACCCTCGAAATATGAAGATAAC
IRR : GTGGCTGTACTAGATTATCCCTAAATTCCACACCGATCCCGCAGGATTTT

Insertion site


Left flankDirect repeatRight flankDR Length
TTGTTTCATTATTTTTAATGTCTGTGCG8

DNA sequence

GGGTCTGTACTAGATTGGCAGATATGTTACCCTCGAAATATGAAGATAACACACTGCAAATTAAAGAAAGAAGTACAGAAAGAACCGCTCCGTTCTTTTG
TACCGGAAGTTACCGCCCGTTCTGCCGCCGATATTTTGGGTATCCATCCCGATTCGGCGGCACTGTTTTACCGTAAAATCCGCACGGTTGCCAACCATCG
TTTGGCCTTGGCTGCCGATGGGGTTTTCGAGGGCCCCGCCGGGCCGGGCGGAAGCTGTTTCGGCGGACGGCGTAAAGGCAGACGCGGTCGCGGCGCGGCA
GGAAAAGCGGTTGTCTTCGGCATTCCGAAACGCAACGGGCGGGCCTATACCGTTGCCGCGGACAATGCCGAGCCTGAAACGTTGCCCCCTGCCGTCAAAA
AGAAAATCATGCCGGACGGTATTGTTTATGCCGATAGCCCGGGCAGCCGCGGCAAGTCGGACGCGGGCGGTTTTACCCGTTGCCGCATCAACCGTTCCGA
GGAATTTGCAGACCGTCGGAACCACATTAACGGCATTGGGAACTTTTGGAATCAGGCAAAACGCGCCTTGCGGAAATACAACGGAATCGATCGTAAACCT
TTCCCGCCGTTGTTGAGGGAATGCGAATTTCGACTTAACTTCGGCACACCGTCCCGGCAGCTAAAAATCCTGCGGGATCGGTGTGGAATTTAGGGATAAT
CTAGTACAGCCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
654 bp217 aa40693+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKITHCKLKKEVQKEPLRSFVPEVTARSAADILGIHPDSAALFYRKIRTVANHRLALAADGVFEGPAGPGGSCFGGRRKGRRGRGAAGKAVVFGIPKRNG
RAYTVAADNAEPETLPPAVKKKIMPDGIVYADSPGSRGKSDAGGFTRCRINRSEEFADRRNHINGIGNFWNQAKRALRKYNGIDRKPFPPLLRECEFRLN
FGTPSRQLKILRDRCGI

 

Blast result :
Comments
IS1016 is 80% aa similar to IS1016C.
References
1] Kahler,C.M., Blum,E., Miller,Y.K., Ryan,D., Popovic,T. and Stephens,D.S.(2001) Infect. Immun. 69 (3), 1687-1696