ISPfu2
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003413 | ND | Pyrococcus furiosus | Pyrococcus furiosus DSM 3638 |
DNA section
IS Length : 782 bp
Ends
IR Length : 15/16
IRL : GATACTGTTAGGATAAGCGGTAGGGCGTTAGGTTTAAGTTTCTGATAATT
IRR : GATACTGTCAGGATAACTGGGGCATCACCTCTTGAAGCCACTCAGTCACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTTACTGTA | TAGCAAGG | GGATGATAAC | 8 |
TTTTTCTCTT | AGGGTGTA | AAGAGGGATA | 8 |
TGGTGTAGTT | GTTCTGGA | AGGGGATAAG | 8 |
GTTTTCGATC | CCCGCATT | GTTACTCTTA | 8 |
AGTTTTTACT | CATAATAT | ATAGATAAAC | 8 |
GTTTTCGTCA | GATTCTGG | AAAAGAAGGG | 8 |
DNA sequence
GATACTGTTAGGATAAGCGGTAGGGCGTTAGGTTTAAGTTTCTGATAATTTTTCAGAAAAAGAAGGGAGAGAAATGAAGGCTGAGAGCATTCTATACTCA
CTGATTTCAGTCTTAAAACCTTTTCGCCGCAACAAAATCCCACCAGAAAAGAAAATCAGAGCAGTAGAACTATACCTGCGAGGCCTCAGCTACAGACAAG
TCGGAAAAATCCTCAAAATCAGCCACACAACAGTCTGGGAGGCAGTTCAAAAACTAGCAGAAGCAGTTTACCAGCCAACACTCCTCGCAGTAAGAAAACA
GAGGAATTTTATCGCAGTTGATGAGACTGTCGTAAAAATCAACGGGGAGAAGAGATTTCTCTGGGCTGCACTTGACGTTGAGAGCAGGGAAGTTCTCGCA
GTCTGGATTACAACAACCAGAAACTGGTGGATTGCTAGAGACTTCATTCTGGTTGTTTTGAAATCCTGCAAAGGACAGCCTGTTTTTCTGGTTGATGGTG
GGAAGTGGTACAAGTCTGCTTTTAAATCCCTTGGACTGGATTTTGTTCACGTAACCTTCGGGCCGAGGAACTGTATTGAACGCTGGTTCAGGACTTTAAA
AGAAAGAACAAAGCGTTTCTGGAATAATTTCAGGGCTAGAGACTGGAGGAGGGTTCACAGGTTTGTTTTTCTGTTTGCGTTCTGGTATAATTTTGTTAGG
TTTCATTCTCGGTTTGGTTGTCCGCCTGGTGATGTGACTGAGTGGCTTCAAGAGGTGATGCCCCAGTTATCCTGACAGTATC
CTGATTTCAGTCTTAAAACCTTTTCGCCGCAACAAAATCCCACCAGAAAAGAAAATCAGAGCAGTAGAACTATACCTGCGAGGCCTCAGCTACAGACAAG
TCGGAAAAATCCTCAAAATCAGCCACACAACAGTCTGGGAGGCAGTTCAAAAACTAGCAGAAGCAGTTTACCAGCCAACACTCCTCGCAGTAAGAAAACA
GAGGAATTTTATCGCAGTTGATGAGACTGTCGTAAAAATCAACGGGGAGAAGAGATTTCTCTGGGCTGCACTTGACGTTGAGAGCAGGGAAGTTCTCGCA
GTCTGGATTACAACAACCAGAAACTGGTGGATTGCTAGAGACTTCATTCTGGTTGTTTTGAAATCCTGCAAAGGACAGCCTGTTTTTCTGGTTGATGGTG
GGAAGTGGTACAAGTCTGCTTTTAAATCCCTTGGACTGGATTTTGTTCACGTAACCTTCGGGCCGAGGAACTGTATTGAACGCTGGTTCAGGACTTTAAA
AGAAAGAACAAAGCGTTTCTGGAATAATTTCAGGGCTAGAGACTGGAGGAGGGTTCACAGGTTTGTTTTTCTGTTTGCGTTCTGGTATAATTTTGTTAGG
TTTCATTCTCGGTTTGGTTGTCCGCCTGGTGATGTGACTGAGTGGCTTCAAGAGGTGATGCCCCAGTTATCCTGACAGTATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
702 bp | 233 aa | 74 | 775 | + | No |
Chemistry : DDE
ORF sequence :
MKAESILYSLISVLKPFRRNKIPPEKKIRAVELYLRGLSYRQVGKILKISHTTVWEAVQKLAEAVYQPTLLAVRKQRNFIAVDETVVKINGEKRFLWAAL
DVESREVLAVWITTTRNWWIARDFILVVLKSCKGQPVFLVDGGKWYKSAFKSLGLDFVHVTFGPRNCIERWFRTLKERTKRFWNNFRARDWRRVHRFVFL
FAFWYNFVRFHSRFGCPPGDVTEWLQEVMPQLS
DVESREVLAVWITTTRNWWIARDFILVVLKSCKGQPVFLVDGGKWYKSAFKSLGLDFVHVTFGPRNCIERWFRTLKERTKRFWNNFRARDWRRVHRFVFL
FAFWYNFVRFHSRFGCPPGDVTEWLQEVMPQLS
Blast result :
Comments
ISPfu2 is 92% aa similar to ISPfu1.
There are 15 full copies and one partial copy in the Pyrococcus furiosus genome.
There are 15 full copies and one partial copy in the Pyrococcus furiosus genome.
References
1] Robb,F.T., Maeder,D.L., Brown,J.R., DiRuggiero,J., Stump,M.D., Yeh,R.K., Weiss,R.B. and Dunn,D.M. (2001) Meth. Enzymol. 330, 134-157
2] Maeder,D.L., Weiss,R.B., Dunn,D.M., Cherry,J.L., Gonzalez,J.M., DiRuggiero,J. and Robb,F.T. (1999) Genetics 152 (4), 1299-1305
2] Maeder,D.L., Weiss,R.B., Dunn,D.M., Cherry,J.L., Gonzalez,J.M., DiRuggiero,J. and Robb,F.T. (1999) Genetics 152 (4), 1299-1305