ISPfu2

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003413 ND Pyrococcus furiosus
Pyrococcus furiosus DSM 3638
DNA section
IS Length : 782 bp

Ends


IR Length : 15/16

IRL : GATACTGTTAGGATAAGCGGTAGGGCGTTAGGTTTAAGTTTCTGATAATT
IRR : GATACTGTCAGGATAACTGGGGCATCACCTCTTGAAGCCACTCAGTCACA

Insertion site


Left flankDirect repeatRight flankDR Length
CTTTACTGTATAGCAAGGGGATGATAAC8
TTTTTCTCTTAGGGTGTAAAGAGGGATA8
TGGTGTAGTTGTTCTGGAAGGGGATAAG8
GTTTTCGATCCCCGCATTGTTACTCTTA8
AGTTTTTACTCATAATATATAGATAAAC8
GTTTTCGTCAGATTCTGGAAAAGAAGGG8

DNA sequence

GATACTGTTAGGATAAGCGGTAGGGCGTTAGGTTTAAGTTTCTGATAATTTTTCAGAAAAAGAAGGGAGAGAAATGAAGGCTGAGAGCATTCTATACTCA
CTGATTTCAGTCTTAAAACCTTTTCGCCGCAACAAAATCCCACCAGAAAAGAAAATCAGAGCAGTAGAACTATACCTGCGAGGCCTCAGCTACAGACAAG
TCGGAAAAATCCTCAAAATCAGCCACACAACAGTCTGGGAGGCAGTTCAAAAACTAGCAGAAGCAGTTTACCAGCCAACACTCCTCGCAGTAAGAAAACA
GAGGAATTTTATCGCAGTTGATGAGACTGTCGTAAAAATCAACGGGGAGAAGAGATTTCTCTGGGCTGCACTTGACGTTGAGAGCAGGGAAGTTCTCGCA
GTCTGGATTACAACAACCAGAAACTGGTGGATTGCTAGAGACTTCATTCTGGTTGTTTTGAAATCCTGCAAAGGACAGCCTGTTTTTCTGGTTGATGGTG
GGAAGTGGTACAAGTCTGCTTTTAAATCCCTTGGACTGGATTTTGTTCACGTAACCTTCGGGCCGAGGAACTGTATTGAACGCTGGTTCAGGACTTTAAA
AGAAAGAACAAAGCGTTTCTGGAATAATTTCAGGGCTAGAGACTGGAGGAGGGTTCACAGGTTTGTTTTTCTGTTTGCGTTCTGGTATAATTTTGTTAGG
TTTCATTCTCGGTTTGGTTGTCCGCCTGGTGATGTGACTGAGTGGCTTCAAGAGGTGATGCCCCAGTTATCCTGACAGTATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
702 bp233 aa74775+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKAESILYSLISVLKPFRRNKIPPEKKIRAVELYLRGLSYRQVGKILKISHTTVWEAVQKLAEAVYQPTLLAVRKQRNFIAVDETVVKINGEKRFLWAAL
DVESREVLAVWITTTRNWWIARDFILVVLKSCKGQPVFLVDGGKWYKSAFKSLGLDFVHVTFGPRNCIERWFRTLKERTKRFWNNFRARDWRRVHRFVFL
FAFWYNFVRFHSRFGCPPGDVTEWLQEVMPQLS

 

Blast result :
Comments
ISPfu2 is 92% aa similar to ISPfu1.
There are 15 full copies and one partial copy in the Pyrococcus furiosus genome.
References
1] Robb,F.T., Maeder,D.L., Brown,J.R., DiRuggiero,J., Stump,M.D., Yeh,R.K., Weiss,R.B. and Dunn,D.M. (2001) Meth. Enzymol. 330, 134-157
2] Maeder,D.L., Weiss,R.B., Dunn,D.M., Cherry,J.L., Gonzalez,J.M., DiRuggiero,J. and Robb,F.T. (1999) Genetics 152 (4), 1299-1305