ISSude1

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007575 ND Sulfurimonas denitrificans
Sulfurimonas denitrificans DSM1251
DNA section
IS Length : 916 bp

Ends


IR Length : 15/16

IRL : ACTCAAATTGCTAGTTAAAAAGAGGATTGTAAATTGCTAGAACCATAAGA
IRR : ACTCAAATTGATAGTTGCTTTTCATCATCAGACAACTTTAAAAAGCAGTC

Insertion site


Left flankDirect repeatRight flankDR Length
TATAATATTCTATTTTATCTTA2

DNA sequence

ACTCAAATTGCTAGTTAAAAAGAGGATTGTAAATTGCTAGAACCATAAGAAAAACTCGTGGCAGAGGGATTCTTATGGAAGAGAACATAATAACAATATT
TTGTTTAGTAGATGATATATTAAAAGCAATAAATGTAAAAGATGATGTTCGTGCGAAAATTTGTAATGCAGAGATATTAACAATAGGATATATGGCAGTG
AGATACTTTCATGGAAATTACTACAGTGCCCACCAATTTTTTATGAGTATGAAACCATCTTATCCAATAGATTACAGTCGTTTTATTAGGAGACTCAATA
ATTTACACAATGCAATAGATTATGCTTTTCAACTTTTGAGTGAAGTGTTTTATAAAACTGCAAAAAGTACCATTTACTCCGTAGATTCATTTCCAGTAGA
AGTTTGTAAAATAGAGCGTTCATCAACTTGTAATATCTACAATCATAAAGATATGAAAGGCTATAACGCTTCAAAGAAAAGATTCTTTTACGGCTTTAAA
GTTCATATGGTAGTAACAACGAATAAAGAACCACTACACTGCTATATCTCTTACGCCAATGAACATGATGCAACTGCTGCAAAAAGATATTTGCCAGCGA
TGAAAGCCAATTCATCTGTCATTGGAGATAAGGGATATGTGTCTAAAAAGCTAGCAACATTTTTAACAAAATTTGGTGTCAATCTCAATGCTATTCAACG
CTCAAATATGGGTGAAGATAAAGATTGTTTTATCAAACGCAGACTTAGAAAAAAAGTTGAAACTGTGTTTTCTATCATTACTGGTAGATTTGGCAATGTT
ATTAAAGCCACTTCGATAGATGGCTTTTTGACTAAACTCAAATTGTTTATTACTGCTTACTCAATGGACTGCTTTTTAAAGTTGTCTGATGATGAAAAGC
AACTATCAATTTGAGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
840 bp279 aa75914+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEENIITIFCLVDDILKAINVKDDVRAKICNAEILTIGYMAVRYFHGNYYSAHQFFMSMKPSYPIDYSRFIRRLNNLHNAIDYAFQLLSEVFYKTAKSTI
YSVDSFPVEVCKIERSSTCNIYNHKDMKGYNASKKRFFYGFKVHMVVTTNKEPLHCYISYANEHDATAAKRYLPAMKANSSVIGDKGYVSKKLATFLTKF
GVNLNAIQRSNMGEDKDCFIKRRLRKKVETVFSIITGRFGNVIKATSIDGFLTKLKLFITAYSMDCFLKLSDDEKQLSI

 

Blast result :
Comments
ISSude1 is 50% aa similar to ISPasp3.
References
1] ISfinder annotation (2009)
2] Sievert,S.M., Scott,K.M., Klotz,M.G., Chain,P.S., Hauser,L.J., Hemp,J., Hugler,M., Land,M., Lapidus,A., Larimer,F.W., Lucas,S., Malfatti,S.A., Meyer,F., Paulsen,I.T., Ren,Q. and Simon,J. (2008) Appl. Environ. Microbiol. 74 (4), 1145-1156