ISSude1
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007575 | ND | Sulfurimonas denitrificans | Sulfurimonas denitrificans DSM1251 |
DNA section
IS Length : 916 bp
Ends
IR Length : 15/16
IRL : ACTCAAATTGCTAGTTAAAAAGAGGATTGTAAATTGCTAGAACCATAAGA
IRR : ACTCAAATTGATAGTTGCTTTTCATCATCAGACAACTTTAAAAAGCAGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATAATATTC | TA | TTTTATCTTA | 2 |
DNA sequence
ACTCAAATTGCTAGTTAAAAAGAGGATTGTAAATTGCTAGAACCATAAGAAAAACTCGTGGCAGAGGGATTCTTATGGAAGAGAACATAATAACAATATT
TTGTTTAGTAGATGATATATTAAAAGCAATAAATGTAAAAGATGATGTTCGTGCGAAAATTTGTAATGCAGAGATATTAACAATAGGATATATGGCAGTG
AGATACTTTCATGGAAATTACTACAGTGCCCACCAATTTTTTATGAGTATGAAACCATCTTATCCAATAGATTACAGTCGTTTTATTAGGAGACTCAATA
ATTTACACAATGCAATAGATTATGCTTTTCAACTTTTGAGTGAAGTGTTTTATAAAACTGCAAAAAGTACCATTTACTCCGTAGATTCATTTCCAGTAGA
AGTTTGTAAAATAGAGCGTTCATCAACTTGTAATATCTACAATCATAAAGATATGAAAGGCTATAACGCTTCAAAGAAAAGATTCTTTTACGGCTTTAAA
GTTCATATGGTAGTAACAACGAATAAAGAACCACTACACTGCTATATCTCTTACGCCAATGAACATGATGCAACTGCTGCAAAAAGATATTTGCCAGCGA
TGAAAGCCAATTCATCTGTCATTGGAGATAAGGGATATGTGTCTAAAAAGCTAGCAACATTTTTAACAAAATTTGGTGTCAATCTCAATGCTATTCAACG
CTCAAATATGGGTGAAGATAAAGATTGTTTTATCAAACGCAGACTTAGAAAAAAAGTTGAAACTGTGTTTTCTATCATTACTGGTAGATTTGGCAATGTT
ATTAAAGCCACTTCGATAGATGGCTTTTTGACTAAACTCAAATTGTTTATTACTGCTTACTCAATGGACTGCTTTTTAAAGTTGTCTGATGATGAAAAGC
AACTATCAATTTGAGT
TTGTTTAGTAGATGATATATTAAAAGCAATAAATGTAAAAGATGATGTTCGTGCGAAAATTTGTAATGCAGAGATATTAACAATAGGATATATGGCAGTG
AGATACTTTCATGGAAATTACTACAGTGCCCACCAATTTTTTATGAGTATGAAACCATCTTATCCAATAGATTACAGTCGTTTTATTAGGAGACTCAATA
ATTTACACAATGCAATAGATTATGCTTTTCAACTTTTGAGTGAAGTGTTTTATAAAACTGCAAAAAGTACCATTTACTCCGTAGATTCATTTCCAGTAGA
AGTTTGTAAAATAGAGCGTTCATCAACTTGTAATATCTACAATCATAAAGATATGAAAGGCTATAACGCTTCAAAGAAAAGATTCTTTTACGGCTTTAAA
GTTCATATGGTAGTAACAACGAATAAAGAACCACTACACTGCTATATCTCTTACGCCAATGAACATGATGCAACTGCTGCAAAAAGATATTTGCCAGCGA
TGAAAGCCAATTCATCTGTCATTGGAGATAAGGGATATGTGTCTAAAAAGCTAGCAACATTTTTAACAAAATTTGGTGTCAATCTCAATGCTATTCAACG
CTCAAATATGGGTGAAGATAAAGATTGTTTTATCAAACGCAGACTTAGAAAAAAAGTTGAAACTGTGTTTTCTATCATTACTGGTAGATTTGGCAATGTT
ATTAAAGCCACTTCGATAGATGGCTTTTTGACTAAACTCAAATTGTTTATTACTGCTTACTCAATGGACTGCTTTTTAAAGTTGTCTGATGATGAAAAGC
AACTATCAATTTGAGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
840 bp | 279 aa | 75 | 914 | + | No |
Chemistry : DDE
ORF sequence :
MEENIITIFCLVDDILKAINVKDDVRAKICNAEILTIGYMAVRYFHGNYYSAHQFFMSMKPSYPIDYSRFIRRLNNLHNAIDYAFQLLSEVFYKTAKSTI
YSVDSFPVEVCKIERSSTCNIYNHKDMKGYNASKKRFFYGFKVHMVVTTNKEPLHCYISYANEHDATAAKRYLPAMKANSSVIGDKGYVSKKLATFLTKF
GVNLNAIQRSNMGEDKDCFIKRRLRKKVETVFSIITGRFGNVIKATSIDGFLTKLKLFITAYSMDCFLKLSDDEKQLSI
YSVDSFPVEVCKIERSSTCNIYNHKDMKGYNASKKRFFYGFKVHMVVTTNKEPLHCYISYANEHDATAAKRYLPAMKANSSVIGDKGYVSKKLATFLTKF
GVNLNAIQRSNMGEDKDCFIKRRLRKKVETVFSIITGRFGNVIKATSIDGFLTKLKLFITAYSMDCFLKLSDDEKQLSI
Blast result :
Comments
ISSude1 is 50% aa similar to ISPasp3.
References
1] ISfinder annotation (2009)
2] Sievert,S.M., Scott,K.M., Klotz,M.G., Chain,P.S., Hauser,L.J., Hemp,J., Hugler,M., Land,M., Lapidus,A., Larimer,F.W., Lucas,S., Malfatti,S.A., Meyer,F., Paulsen,I.T., Ren,Q. and Simon,J. (2008) Appl. Environ. Microbiol. 74 (4), 1145-1156
2] Sievert,S.M., Scott,K.M., Klotz,M.G., Chain,P.S., Hauser,L.J., Hemp,J., Hugler,M., Land,M., Lapidus,A., Larimer,F.W., Lucas,S., Malfatti,S.A., Meyer,F., Paulsen,I.T., Ren,Q. and Simon,J. (2008) Appl. Environ. Microbiol. 74 (4), 1145-1156