ISMyca1

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ619854 ND Mycobacterium canettii
Mycobacterium canettii CIP 14000059
DNA section
IS Length : 1968 bp

Ends


IR Length : 19/26

IRL : CCGAAGTTCCCCCTTGTAGGGGCGGGCTGAGTTTCGATCTGTTTCGTGAG
IRR : CCGAAGTTCCCCCTGATCCGGCGCGGTTTGTGTCGTTGACCTGGGCATTT

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNGCTAGCNNNNNNNNNN6

DNA sequence

CCGAAGTTCCCCCTTGTAGGGGCGGGCTGAGTTTCGATCTGTTTCGTGAGCAGGTGTTTCTGTGTTCAACTTCCCTCAACATGTACTCATGTATTATTGA
GAATAGCTCGGCGTGTCATCCTCTGATGACGCTATTATCGCGCTGACCGCGTGTTATAAAGTAATCATGTACATTACCCGGGTACCCAACCGGGGATCCC
CGCCGGCGGTGCTGTTGCGGGAAAGCTTCCGCGAAAACGGCAAGGTCAAGACGCGTACCCTGGCCAACCTCTCACGCTGGCCCGAGCACAAGCTGGACAG
ACTGGACCGGGCGCTTAAGGGCTTGCCGCCCGCGGACTGGGATCTAGCCGAGGCCTTCGATATCACCCGCAGCCTGCCGCACGGGCATGTGGCCGCGGTG
GCCGGCACCGCCGAGAAGCTGGGCATACCCGAGCTGATCGACCCCACCCCGTCGCGGCGGCGCAACCTGGTGCTGGCCATGCTGATCGGGCAGATCATCG
AGCCCGGATCGAAACTGGCGATCGCGCGCGGGCTGCGCGCCCAGACCGCCACCAGCACGCTGGGTGCGGTGCTGGGTGTCTCGGGCGCCGATGAGGACGA
CCTGTATGACGCGATGGACTGGGCGCTGGAGCGCAAAGACGGCATCGAAAACGCCTTGGCCGCACGGCATCTGACCAACGGCACCCTGGTGCTCTATGAC
GTATCCTCGGCGGCGTTCGAGGGCCACACCTGCCCGCTGGGAGCGATCGGGCACGCCCGCGACGGGGTCAAAGGCCGGCTGCAGATCGTCTACGGGCTGC
TGTGCTCACCCAAGGGAGCGCCGGTGGCCATCGAGGTGTTCAAGGGCAACACCGCCGACCCGAAAACTCTGAAAGCTCAAATCGACAAGCTCAAAACCCG
GTTCGGGTTGACCCGCATCGCCCTGGTGGGCGATCGGGGCATGCTCACTTCCGCGCGCATCCGTGACGAGCTGCGTCCGGCGCACCTGGATTGGATCAGC
GCGCTGCGCGCCCCGCAGATCAAGATCCTGCTCGAGGACGGGGCGCTGCAGCTGTCGCTGTTCGATGAGCAGAACCTGTTCGAGATCACTCACCCCGACT
ATCCCGGTGAGCGGCTGGTGTGCTGCCACAACCCCGCCCTGGCCGACGAGCGCGCCCGCAAACGCGCCGAGCTGCTGGCGGCCACCGAAAAGGAGCTGCA
GGCCATCGCCGAAGCCACCCGCCGCCAACGCCGGCCGTTACGCGGTACAGACAAGATCGGCCTGCGGGTGGGCAAGGTGCGCAACAAGTTCAAGATGGCC
AAGCACTTTGACCTGCACATCACCGATGAGGCCTTCAGCTTCACCCGCAACCAGAACAGTATCGCCGCCGAGGCCGCCCTCGACGGCATCTACGTGCTAC
GCACCAGCCTGCCCGACAACGCCCTGGGCCGCGACGACGTGGTGGGCCGCTACAAAGACCTCGCCGACGTCGAACGCTTCTTCCGCACCCTCAACAGCGA
ACTGGACGTACGCCCCATCCGGCATCGGCTGGCCGACCGGGTCCGCGCCCACATGTTCTTGCACATGCTCTCCTACTACATCAGCTGGCACATGAAACAA
GCCCTGGCCCCAATCCTGTTCACCGACAACGACAAACCCGCCGCCGCCGCCAAACGCGCCGACCCCGTCGCGCCAGCCCAACGCTCCGACGAAGCGCTGA
ACAAGGCAGCACGCAAACGCACCGAAGACAACCAACCGGTGCACAGCTTCACCAGCCTGCTCACCGACCTGGCCACCATCTGCGCCAACTACATCCAACC
CACAGACGACCTGCCAGCATTCACCAAAACCACCACCCCCACCCCCACACAACGGCGCGCCTTCGACCTACTGGCCGTTTCCCACCGCCACGGCCTGGCG
TAGTCAGTACCGAACCACAAATGCCCAGGTCAACGACACAAACCGCGCCGGATCAGGGGGAACTTCGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1756 bp596 aa1131868+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSSSDDAIIALTACYKVIMYITRVPNRGSPPAVLLRESFRENGKVKTRTLANLSRWPEHKLDRLDRALKGLPPADWDLAEAFDITRSLPHGHVAAVAGTA
EKLGIPELIDPTPSRRRNLVLAMLIGQIIEPGSKLAIARGLRAQTATSTLGAVLGVSGADEDDLYDAMDWALERKDGIENALAARHLTNGTLVLYDVSSA
AFEGHTCPLGAIGHARDGVKGRLQIVYGLLCSPKGAPVAIEVFKGNTADPKTLKAQIDKLKTRFGLTRIALVGDRGMLTSARIRDELRPAHLDWISALRA
PQIKILLEDGALQLSLFDEQNLFEITHPDYPGERLVCCHNPALADERARKRAELLAATEKELQAIAEATRRQRRPLRGTDKIGLRVGKVRNKFKMAKHFD
LHITDEAFSFTRNQNSIAAEAALDGIYVLRTSLPDNALGRDDVVGRYKDLADVERFFRTLNSELDVRPIRHRLADRVRAHMFLHMLSYYISWHMKQALAP
ILFTDNDKPAAAAKRADPVAPAQRSDEALNKAARKRTEDNQPVHSFTSLLTDLATICANYIQPTDDLPAFTKTTTPTPTQRRAFDLLAVSHRHGLA

 

Blast result :
Comments
ISMyca1 is 47% aa similar to ISMhp1.
There are at least 2 copies in the genome.
This is an IS element which is present in most Mycobacterium canettii strains (Members of the Mycobacterium tuberculosis complex). From inverted repeat to inverted repeat the sequence is specific for M. canettii and has not been found in any other member of the M. tuberculosis complex, nor in any other known organism.
References
1] Brosch,R. (2004) Direct submission GenBank.