ISLhe6

  • Family IS3
  • Group IS150
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY616518 ND Lactobacillus helveticus
Lactobacillus helveticus DPC4571
DNA section
IS Length : 1305 bp

Ends


IR Length : 24/28

IRL : TGAGGTGAGACCTAAAAGTGAGACACTTTTAGGTCTTTTACTATGTCTAA
IRR : TGAACTGAGACCTAAAAATTAGACAGTTTAAAATACAGGATTAATAGAGG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TGAGGTGAGACCTAAAAGTGAGACACTTTTAGGTCTTTTACTATGTCTAAATTTAATAAAGAACAAAAGATAGAAATTTATCGTAAATGGAAAGATGAGA
AAATCTCAATCAGTCAGTTGTCAAAAGCATATAAAATGAACTTAGCTAATCTGGATTACATGCTTAGATTGATTGATATGCATGGAACGGATATTTTGAA
TACTAGAAAGCGGGTTTATTCTAAGAAGTTTAAAGAACAAACAATTGAACAAGCTATCTTTGGTACTAAGTCAGATGTTCAATTATCTCTAGAATTAGGT
TTCAAAAGCATTGGCAGGCTTAACAATTGGCTTAGAGAATACAAAGAAAACGGGTATAATTTTATTATCAAACAGAAAGGACGTCCTGCCCGTGGTCAAA
GAGGGTCAAAAATCGCGCAAGGAACTGGAGAAAGAGATCCAAAAGCTGAAAGAAGAAAACTTGCGATTGCGTATTGTGAACGAATACGTAAAAAAACTGA
AGGCCTTGGATCAGGAAAAAGATCAGAAGAGATAGCTAAGCTTATTGCCAAGATCAAAGAAATCTTTAATCATCATCAAGGCCGTTATGGCTATCGCCGA
GTAGCGCTGCAGCTAATTAAAGAAGGCTGGAACATTACTGAAAAAACAGTTCGCTACTGGATGCATAAACTAGGCCTTAAGGGCATTAGACGCAATAAGC
GCAAATACTCGAGCTATAAAGGTACTATTGGCAAAATAGCACCTAATTTGATTCATCGCGATTTCTTTGCGCCAATGCCTAATATGAAATGGCATACTGA
CATCACTGAATTTCACCTTAATGGTGAAAAGCTATATTTATCGCCTATTTTGGATGGTTGTGGAGGCGATATAGTTTCTTATTCTATTTCAAGACATCCA
GATATGGATTTAGTAATGACGATGCTTGATAAAGCTTTCGTTAAAGAAACAGCTCTTAATAACTGCACTTTTCATACTGACCAAGGCTGTCAATATCAGA
GTCCCCAATACCAACGTACCTTAAAACTTCAGGGCATTACTCAAAGCATGTCTAGAAAAGGCAATTCCATGGATGATGGTTTAATGGAGAACTTCTTTGG
TCTGCTTAAAACAGAGATGTTTTACGATCAAGAGTACAAATACCATAGCCTTCAAGAATTAACTCAAGCTATTAAAGAATATATTGAATACTATAACGAA
GAAAGGATAAAGAGCAGATTAAGAGGCTTAACTCCAAAAGAATATCGGAATCAAGCCTCTATTAATCCTGTATTTTAAACTGTCTAATTTTTAGGTCTCA
GTTCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1236 bp411 aa431278+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKFNKEQKIEIYRKWKDEKISISQLSKAYKMNLANLDYMLRLIDMHGTDILNTRKRVYSKKFKEQTIEQAIFGTKSDVQLSLELGFKSIGRLNNWLREY
KENGYNFIIKQKGRPARGQRGSKIAQGTGERDPKAERRKLAIAYCERIRKKTEGLGSGKRSEEIAKLIAKIKEIFNHHQGRYGYRRVALQLIKEGWNITE
KTVRYWMHKLGLKGIRRNKRKYSSYKGTIGKIAPNLIHRDFFAPMPNMKWHTDITEFHLNGEKLYLSPILDGCGGDIVSYSISRHPDMDLVMTMLDKAFV
KETALNNCTFHTDQGCQYQSPQYQRTLKLQGITQSMSRKGNSMDDGLMENFFGLLKTEMFYDQEYKYHSLQELTQAIKEYIEYYNEERIKSRLRGLTPKE
YRNQASINPVF

 

Blast result :
Comments
ISLhe6 is 56% aa similar to ISL6.
References
1] Callanan,M.J., Beresford,T.P. and Ross,P.R. (2004) Appl. Environ. Microbiol. In press