ISLhe1

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY616518 ND Lactobacillus helveticus
Lactobacillus helveticus DPC4571
DNA section
IS Length : 965 bp

Ends


IR Length : 27/28

IRL : ACGCGTGGTGCTAGTTAAATCGTTTTAGTTAAATAAAAAGTCCAATCTTG
IRR : ACGCGTGGTGCTAGTTAAATCGTTCTAGACAATATGCCATATTATAAGCT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTGAAAGAGCTTTTATTTAGCATGTAA8

DNA sequence

ACGCGTGGTGCTAGTTAAATCGTTTTAGTTAAATAAAAAGTCCAATCTTGTTAGACTCGACTTGTAAATAGTAATATATAGAAAAGAGTCTGACTAGATT
GAACTGTCTTAAGCTTAAGCATTTTTCTCATCATTTACAAGTTAGTTTTACTCGTTTAAACAATATTTGTCGTTCTTGGTATAAGCTGTATGCTCCGAAC
TCCCTTAAGCATCGCAGAAATACAGATCAGATCAAGCTATCTGATAGTTCCATCTTAGCTATGCTTATCTGGCAAGCGGAATTAGGGATTGAATCACAAA
GAAGATTTTGCAGGTTCTTTGTAGGATTATCCCATTCCCGATTTAATCGCCGAGCTCGTCAACTTTTGCCTTTAATCTATCTGATTCGTCATACTTTGAA
CCAAGAAGTGGATCTTTCAGGTAAAATTCTGATTATTGATAGTTTCCCAGTTCCGGTCTGCCAACCTGTTCGTAATTATCGCGTCAAAATCTTTCATGAT
ATTGCCGATATTGGTTATAAGGCGACTAAAAAAGTCTACTATTATGGGTTCAAGGTTCACGCAATAGTGAGCGATGATGGCTATCTGCTTGATTACGCAG
TCACTAAAGCATCGGTGCATGATGCTAAAGAAACAGTAGAATTGATGAATAATGCCCATCCTACTAATCATTATCTTTTAGGCGATGAAGGTTATTTAGG
TAAGGATTTAGCCGCTAAACTAAAACAAATGAGCTATGTGCTTTGGACACCGTATCGTAAAAATATGCAAGGTGCTAAAAAAATAACAATCATCAACTAA
TGGCGATCAGACGGACAATTGAGAGTGACTTTGCTTTGCTTAGTTATTACAATGCCGAAAATAATCGCGCTAGAAGTCTAGCGGGTTTTCAAGAACGCCT
AGAGGTTGCAGTGTTAGCTTATAATATGGCATATTGTCTAGAACGATTTAACTAGCACCACGCGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
723 bp240 aa78800+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEKSLTRLNCLKLKHFSHHLQVSFTRLNNICRSWYKLYAPNSLKHRRNTDQIKLSDSSILAMLIWQAELGIESQRRFCRFFVGLSHSRFNRRARQLLPLI
YLIRHTLNQEVDLSGKILIIDSFPVPVCQPVRNYRVKIFHDIADIGYKATKKVYYYGFKVHAIVSDDGYLLDYAVTKASVHDAKETVELMNNAHPTNHYL
LGDEGYLGKDLAAKLKQMSYVLWTPYRKNMQGAKKITIIN

 

Blast result :
Comments
ISLhe1 is 83% aa similar to ISLh1.
References
1] Callanan,M.J., Beresford,T.P. and Ross,P.R. (2005) Appl. Environ. Microbiol. 71(3), 1655-1658.