ISEcl1
- Family IS3
- Group IS2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF342826 | ND | Enterobacter cloacae | Enterobacter cloacae cloacae 13047 Enterobacter cloacae plasmid pPDL12 Enterobacter cloacae cloacae 13047p plasmid pECL A |
DNA section
IS Length : 1336 bp
Ends
IR Length : 30/47
IRL : TGATGTAGCCCCCTGAAACACCGGACAGTAGCTGTATCTCCAGATAAGAG
IRR : TGATCTTGACCCTCCATCTCCGAACAGCTTTTGTATCTTAAGTTAACGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATTGCCGTATT | TG | GCGCTATTGCTTG | 2 |
CTACCTGTTA | GGGCTGAAAGGCAGA | ATAGGCAGCG | 15 |
AGAGATGGCA | ACGATGTTTTGTTGTT | CTCAAAAGGA | 16 |
TGATGTATTT | TGCCAAACAGCTTAC | CAAGAACGCC | 15 |
GTTGAAGTAA | ATGCC | CTTGCTTCCT | 5 |
CGCGCTTGTA | TTCAACATCGAAATTG | AGTGGTAAAG | 16 |
CTTTTTCTGA | CGGAAGTGCGCGGTAC | GTTCCCAGCA | 16 |
TTCAAGGAAA | GTTTTTAGCAATTCCG | TATCCACATC | 16 |
GGAGCGCTAT | GCCACCGGGATTAGC | GAAATAGTCA | 15 |
TCGTAACATG | GTTCCATGTTATCAC | TGGGTTATCA | 15 |
ACTGATTTCC | CCATGCATCGAAACT | GTTAGAAGTT | 15 |
CTGAATTTGA | TCGAAAGCGTCCATAG | CTTCTTTCAT | 16 |
ATGAAATCAT | CTGCGCTGACCTGTC | GCTGAACAAC | 15 |
DNA sequence
TGATGTAGCCCCCTGAAACACCGGACAGTAGCTGTATCTCCAGATAAGAGATAGGCTTGAATATATGTCTAACACTAACGCCAATTTTGAGATGACCGGG
ATCCTGTTAGGGCAAGAAGTCCGTAAACGTAAAACTCCTCAGGAGAAGATCGCCATTATCCAGCAGACGATGGAGCCGGGTATGAATGTCTCCCATGTCG
CCCGCCTGCATGGTATCCAGCCCAGCCTGCTGTTTAAGTGGAAGAAGCAATATCAGGAAGGCAGCCTCACCGCCGTTGCGGCTGGAGAGGAAGTCGTTCC
TGCTTCTGAGCTTACTGCTGCTCTGAAGCAGGTCCGGGAGCTTCAGCGCCTTCTGGGCAAGAAAACGATGGAAGTTGAGATCCTGAAAGAAGCCGTGGAG
TACGGTCAGTCGCGAAAATGGATAGCGCACGCGCCCTTGTTGCCAAAGGACGGGGAATAGCCATGGTCAGCCGGACCATGGGCGTGTCGCGTGCGCAACT
GTCACTGCGGATTAACCGTTCTGCCGACTGGCAGGACAGGCGCTGTAACCGGCGTAATGAAGAAGCAGACGCAGTAATACTGTCGGCTATCCTCAACATT
ATCAGCGATATGCCGAGTTATGGTTATCGACGCGTGTGGGGCATCCTGCGCAAGCAACGTCGCACAGAGGGACAGCCACCTGTGAATGCCAAACGGCTTT
ACAGGATAATGAGCGAGCATAACCTGTTGTTGTTGCATCACAAACCAGAGCGACCGAAGCGTGAACATAAGGGCAAGATAGCGGTGGCAGAAAGCGATAT
GCGCTGGTGTTCAGATGGCTTCGAGTTCGGCTGCGACAACGGCGAAAAACTGCGGGTAACGTTCGCGCTGGACTGCTGCGACCGTGAGGCCATAGACTGG
GCAGCAAGCACGGGAGGCTATGACAGTTCGACCGTGCAGGATGTGATGCTGAGGTCGGTGGAAAAGCGCTTCGGCGACAGGTTGCCCGACACAGCGGTGC
AGTGGCTGACGGATAACGGTTCAGCGTATACCGCGTATGAAACGCGGAGGTTCGCGAGAGAGCTGAATCTGGAGCCCTGCACAACAGCGGTGAGCAGCCC
GCAGAGTAATGGCATGGCCGAACGGTTCGTGAAAACGATGAAAGAAGACTATATCGCGTTCATGCCAAAACCGGATGTGAGAACAGCACTGCGAAACCTT
GCAGTAGCGTTCACGCATTACAATGAAAACCACCCGCACAGCGCGCTGGGATATCACTCCCCGAGGGAATACCGGCGGCAGCGGACATCGTTAACTTAAG
ATACAAAAGCTGTTCGGAGATGGAGGGTCAAGATCA
ATCCTGTTAGGGCAAGAAGTCCGTAAACGTAAAACTCCTCAGGAGAAGATCGCCATTATCCAGCAGACGATGGAGCCGGGTATGAATGTCTCCCATGTCG
CCCGCCTGCATGGTATCCAGCCCAGCCTGCTGTTTAAGTGGAAGAAGCAATATCAGGAAGGCAGCCTCACCGCCGTTGCGGCTGGAGAGGAAGTCGTTCC
TGCTTCTGAGCTTACTGCTGCTCTGAAGCAGGTCCGGGAGCTTCAGCGCCTTCTGGGCAAGAAAACGATGGAAGTTGAGATCCTGAAAGAAGCCGTGGAG
TACGGTCAGTCGCGAAAATGGATAGCGCACGCGCCCTTGTTGCCAAAGGACGGGGAATAGCCATGGTCAGCCGGACCATGGGCGTGTCGCGTGCGCAACT
GTCACTGCGGATTAACCGTTCTGCCGACTGGCAGGACAGGCGCTGTAACCGGCGTAATGAAGAAGCAGACGCAGTAATACTGTCGGCTATCCTCAACATT
ATCAGCGATATGCCGAGTTATGGTTATCGACGCGTGTGGGGCATCCTGCGCAAGCAACGTCGCACAGAGGGACAGCCACCTGTGAATGCCAAACGGCTTT
ACAGGATAATGAGCGAGCATAACCTGTTGTTGTTGCATCACAAACCAGAGCGACCGAAGCGTGAACATAAGGGCAAGATAGCGGTGGCAGAAAGCGATAT
GCGCTGGTGTTCAGATGGCTTCGAGTTCGGCTGCGACAACGGCGAAAAACTGCGGGTAACGTTCGCGCTGGACTGCTGCGACCGTGAGGCCATAGACTGG
GCAGCAAGCACGGGAGGCTATGACAGTTCGACCGTGCAGGATGTGATGCTGAGGTCGGTGGAAAAGCGCTTCGGCGACAGGTTGCCCGACACAGCGGTGC
AGTGGCTGACGGATAACGGTTCAGCGTATACCGCGTATGAAACGCGGAGGTTCGCGAGAGAGCTGAATCTGGAGCCCTGCACAACAGCGGTGAGCAGCCC
GCAGAGTAATGGCATGGCCGAACGGTTCGTGAAAACGATGAAAGAAGACTATATCGCGTTCATGCCAAAACCGGATGTGAGAACAGCACTGCGAAACCTT
GCAGTAGCGTTCACGCATTACAATGAAAACCACCCGCACAGCGCGCTGGGATATCACTCCCCGAGGGAATACCGGCGGCAGCGGACATCGTTAACTTAAG
ATACAAAAGCTGTTCGGAGATGGAGGGTCAAGATCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
369 bp | 122 aa | 92 | 460 | + | No |
Description : First part of the transposase
ORF sequence :
MTGILLGQEVRKRKTPQEKIAIIQQTMEPGMNVSHVARLHGIQPSLLFKWKKQYQEGSLTAVAAGEEVVPASELTAALKQVRELQRLLGKKTMEVEILKE
AVEYGQSRKWIAHAPLLPKDGE
AVEYGQSRKWIAHAPLLPKDGE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
921 bp | 306 aa | 379 | 1299 | + | No |
Description : Second part of the transposase
ORF sequence :
DPERSRGVRSVAKMDSARALVAKGRGIAMVSRTMGVSRAQLSLRINRSADWQDRRCNRRNEEADAVILSAILNIISDMPSYGYRRVWGILRKQRRTEGQP
PVNAKRLYRIMSEHNLLLLHHKPERPKREHKGKIAVAESDMRWCSDGFEFGCDNGEKLRVTFALDCCDREAIDWAASTGGYDSSTVQDVMLRSVEKRFGD
RLPDTAVQWLTDNGSAYTAYETRRFARELNLEPCTTAVSSPQSNGMAERFVKTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSALGYHSPREYRR
QRTSLT
PVNAKRLYRIMSEHNLLLLHHKPERPKREHKGKIAVAESDMRWCSDGFEFGCDNGEKLRVTFALDCCDREAIDWAASTGGYDSSTVQDVMLRSVEKRFGD
RLPDTAVQWLTDNGSAYTAYETRRFARELNLEPCTTAVSSPQSNGMAERFVKTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSALGYHSPREYRR
QRTSLT
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1208 bp | 402 aa | 92 | 1299 | + | Yes |
Chemistry : DDE
ORF sequence :
MTGILLGQEVRKRKTPQEKIAIIQQTMEPGMNVSHVARLHGIQPSLLFKWKKQYQEGSLTAVAAGEEVVPASELTAALKQVRELQRLLGKKTMEVEILKE
AVEYGQSRKWIAHAPLLPKGRGIAMVSRTMGVSRAQLSLRINRSADWQDRRCNRRNEEADAVILSAILNIISDMPSYGYRRVWGILRKQRRTEGQPPVNA
KRLYRIMSEHNLLLLHHKPERPKREHKGKIAVAESDMRWCSDGFEFGCDNGEKLRVTFALDCCDREAIDWAASTGGYDSSTVQDVMLRSVEKRFGDRLPD
TAVQWLTDNGSAYTAYETRRFARELNLEPCTTAVSSPQSNGMAERFVKTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSALGYHSPREYRRQRTS
LT
AVEYGQSRKWIAHAPLLPKGRGIAMVSRTMGVSRAQLSLRINRSADWQDRRCNRRNEEADAVILSAILNIISDMPSYGYRRVWGILRKQRRTEGQPPVNA
KRLYRIMSEHNLLLLHHKPERPKREHKGKIAVAESDMRWCSDGFEFGCDNGEKLRVTFALDCCDREAIDWAASTGGYDSSTVQDVMLRSVEKRFGDRLPD
TAVQWLTDNGSAYTAYETRRFARELNLEPCTTAVSSPQSNGMAERFVKTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSALGYHSPREYRRQRTS
LT
Blast result :
Comments
ISEcl1 is 88% (ORF1) and 77% (ORF2) aa similar to IS2.
File updated : January 27 2012.
File updated : January 27 2012.
References
1] Eaton,R.W. and Karns,J.S. (1991) J. Bacteriol. 173 (3), 1363-1366
2] Karns,J.S. and Eaton,R.W. (1997) J. Agric. Food Chem. 45, 1017-1022
2] Karns,J.S. and Eaton,R.W. (1997) J. Agric. Food Chem. 45, 1017-1022