ISMpa1

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY169961 ND Mycobacterium avium
Mycobacterium avium subsp. Paratuberculosis
Mycobacterium avium subsp. avium
DNA section
IS Length : 1500 bp

Ends


Left end : ATGGGGATCGAACAGTGAGCCTTCGGCTGTTGATCCCTTGTTCGGGGGACGCTGTTTACCGAGCCGCCGGTCGGTGAGCGTCGTTGCCAGCTGAAGCGAT
Right end : ACGACACCGAACCCACTACGACGAACACAAAGCCTGGGCACACCGCCAAACCAACCCCGACTCCCAGGCGGCTTGACAACTTACGGACCTGGGATGTCTA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

ATGGGGATCGAACAGTGAGCCTTCGGCTGTTGATCCCTTGTTCGGGGGACGCTGTTTACCGAGCCGCCGGTCGGTGAGCGTCGTTGCCAGCTGAAGCGAT
GGCCGACTTCTAAGGCTAGATCACGCCCCGGCCGGTTGGTGAGGGTTCCTGTAGCACTGATGGGGTGTCGTGCCGTTGAGCACTGATCCATTAGCTTGTC
GCCGGGTGCCCTTGGGCTCGAACATGTTCGATGACCACCGAGGAGGCGCTACGTGATATTTGTCGGCGACGATTGGGCGGAGGATCATCACGACGTCCAC
CTGATGGATGAATCCGGGGCCCGGCTGGCCTCGCGTCGGTTACCGGAGGGACTTGCCGGCATCGGCGAGTTCCATCAGCTTTTGGCCCGCCATGCCGAAG
AGCCCGACCAGGTCGTGATTGGAATCGAAACCGACCGTGGTTTGTGGGTCGAGGCGCTCACCGCGGCCGATTACCAGGTGTATGCGATCAACCCGATGGC
GGCCGCCCGCTACCGCGACCGCCACCATGTGTCGGGGGCCAAATCCGATGCCGGGGACGCCAAGCTCTTGGCGGATCTGGTGCGCACCGATCGCCACAAT
CACCGCCGCGTCGCCGGTGACTCCGCTGATACCGAGGCGGTCAAAGTGCTGGCCCGGGCACATCAGAATCTGATCTGGACCCGCAATCGGCACACCAACG
CGCTGCGCTCGGCGCTGCGCGAGTACTACCCAGGCGCGCTGGAGGCGTTCGACGATCTGCACGACCGCGACGCTCTGGCGATCCTGGGCCGAGCGCCCAC
CCCCATGCAAGCGGCGAACCTGAGTCTGTCGAAGATCCGGTCTGCACTCAAAGCCGCTGGGCGACAACGCAACCTCGACACCGTCGCCCAGGACATTCAA
ACCGCTTTACGCGCTGAGCAGCTCGCCGCCCCTGCCGCGGTCACCGCCGCGTTCGGCGCAACCACCCGCGCCACGGTCGGCATCATCGCTGAACTGAACC
GCCAGATCACCGACCTTGAGGCCGAACTGGCAACACATTTTGAGACACACCCGGACGCCGACATCTACCGCTCCCTGCCAGGACTTGGTGTCATCCTCGG
CGCCCGGGTGCTCGGTGAGTTCGGGGACGACCCGAACAGGTACACCACCGCCAAGTGTCGCAAAAACTACGCCGGAACGTCGCCGCTGACCGTCGCCTCC
GGCCGCAAACGCGCCGTGCTGGCCCGCCACGTCCGCAACCGCCGGCTCTACGACGCGATCGACCAATGGGCCTTCTGCGCCCTGAACACCAGCCCCGGCG
CCCGCCTGTTCTACGACCGGCGTCGCGCTGCCGGCGACCTCCACCACCAAGCGCTACGCGCCCTCGGTAACCGCCTCGTAGGCATCCTCCACGGCTGCCT
ACGACACCGAACCCACTACGACGAACACAAAGCCTGGGCACACCGCCAAACCAACCCCGACTCCCAGGCGGCTTGACAACTTACGGACCTGGGATGTCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1224 bp407 aa2531476+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MIFVGDDWAEDHHDVHLMDESGARLASRRLPEGLAGIGEFHQLLARHAEEPDQVVIGIETDRGLWVEALTAADYQVYAINPMAAARYRDRHHVSGAKSDA
GDAKLLADLVRTDRHNHRRVAGDSADTEAVKVLARAHQNLIWTRNRHTNALRSALREYYPGALEAFDDLHDRDALAILGRAPTPMQAANLSLSKIRSALK
AAGRQRNLDTVAQDIQTALRAEQLAAPAAVTAAFGATTRATVGIIAELNRQITDLEAELATHFETHPDADIYRSLPGLGVILGARVLGEFGDDPNRYTTA
KCRKNYAGTSPLTVASGRKRAVLARHVRNRRLYDAIDQWAFCALNTSPGARLFYDRRRAAGDLHHQALRALGNRLVGILHGCLRHRTHYDEHKAWAHRQT
NPDSQAA

 

Blast result :
Comments
References
1] Olsen,I., Johansen,T.B., Billman-Jacobe,H., Nilsen,S.F. and Djonne,B.(2004) Vet. Microbiol. 98 (3-4), 297-306