ISMpa1
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY169961 | ND | Mycobacterium avium | Mycobacterium avium subsp. Paratuberculosis Mycobacterium avium subsp. avium |
DNA section
IS Length : 1500 bp
Ends
Left end : ATGGGGATCGAACAGTGAGCCTTCGGCTGTTGATCCCTTGTTCGGGGGACGCTGTTTACCGAGCCGCCGGTCGGTGAGCGTCGTTGCCAGCTGAAGCGAT
Right end : ACGACACCGAACCCACTACGACGAACACAAAGCCTGGGCACACCGCCAAACCAACCCCGACTCCCAGGCGGCTTGACAACTTACGGACCTGGGATGTCTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
ATGGGGATCGAACAGTGAGCCTTCGGCTGTTGATCCCTTGTTCGGGGGACGCTGTTTACCGAGCCGCCGGTCGGTGAGCGTCGTTGCCAGCTGAAGCGAT
GGCCGACTTCTAAGGCTAGATCACGCCCCGGCCGGTTGGTGAGGGTTCCTGTAGCACTGATGGGGTGTCGTGCCGTTGAGCACTGATCCATTAGCTTGTC
GCCGGGTGCCCTTGGGCTCGAACATGTTCGATGACCACCGAGGAGGCGCTACGTGATATTTGTCGGCGACGATTGGGCGGAGGATCATCACGACGTCCAC
CTGATGGATGAATCCGGGGCCCGGCTGGCCTCGCGTCGGTTACCGGAGGGACTTGCCGGCATCGGCGAGTTCCATCAGCTTTTGGCCCGCCATGCCGAAG
AGCCCGACCAGGTCGTGATTGGAATCGAAACCGACCGTGGTTTGTGGGTCGAGGCGCTCACCGCGGCCGATTACCAGGTGTATGCGATCAACCCGATGGC
GGCCGCCCGCTACCGCGACCGCCACCATGTGTCGGGGGCCAAATCCGATGCCGGGGACGCCAAGCTCTTGGCGGATCTGGTGCGCACCGATCGCCACAAT
CACCGCCGCGTCGCCGGTGACTCCGCTGATACCGAGGCGGTCAAAGTGCTGGCCCGGGCACATCAGAATCTGATCTGGACCCGCAATCGGCACACCAACG
CGCTGCGCTCGGCGCTGCGCGAGTACTACCCAGGCGCGCTGGAGGCGTTCGACGATCTGCACGACCGCGACGCTCTGGCGATCCTGGGCCGAGCGCCCAC
CCCCATGCAAGCGGCGAACCTGAGTCTGTCGAAGATCCGGTCTGCACTCAAAGCCGCTGGGCGACAACGCAACCTCGACACCGTCGCCCAGGACATTCAA
ACCGCTTTACGCGCTGAGCAGCTCGCCGCCCCTGCCGCGGTCACCGCCGCGTTCGGCGCAACCACCCGCGCCACGGTCGGCATCATCGCTGAACTGAACC
GCCAGATCACCGACCTTGAGGCCGAACTGGCAACACATTTTGAGACACACCCGGACGCCGACATCTACCGCTCCCTGCCAGGACTTGGTGTCATCCTCGG
CGCCCGGGTGCTCGGTGAGTTCGGGGACGACCCGAACAGGTACACCACCGCCAAGTGTCGCAAAAACTACGCCGGAACGTCGCCGCTGACCGTCGCCTCC
GGCCGCAAACGCGCCGTGCTGGCCCGCCACGTCCGCAACCGCCGGCTCTACGACGCGATCGACCAATGGGCCTTCTGCGCCCTGAACACCAGCCCCGGCG
CCCGCCTGTTCTACGACCGGCGTCGCGCTGCCGGCGACCTCCACCACCAAGCGCTACGCGCCCTCGGTAACCGCCTCGTAGGCATCCTCCACGGCTGCCT
ACGACACCGAACCCACTACGACGAACACAAAGCCTGGGCACACCGCCAAACCAACCCCGACTCCCAGGCGGCTTGACAACTTACGGACCTGGGATGTCTA
GGCCGACTTCTAAGGCTAGATCACGCCCCGGCCGGTTGGTGAGGGTTCCTGTAGCACTGATGGGGTGTCGTGCCGTTGAGCACTGATCCATTAGCTTGTC
GCCGGGTGCCCTTGGGCTCGAACATGTTCGATGACCACCGAGGAGGCGCTACGTGATATTTGTCGGCGACGATTGGGCGGAGGATCATCACGACGTCCAC
CTGATGGATGAATCCGGGGCCCGGCTGGCCTCGCGTCGGTTACCGGAGGGACTTGCCGGCATCGGCGAGTTCCATCAGCTTTTGGCCCGCCATGCCGAAG
AGCCCGACCAGGTCGTGATTGGAATCGAAACCGACCGTGGTTTGTGGGTCGAGGCGCTCACCGCGGCCGATTACCAGGTGTATGCGATCAACCCGATGGC
GGCCGCCCGCTACCGCGACCGCCACCATGTGTCGGGGGCCAAATCCGATGCCGGGGACGCCAAGCTCTTGGCGGATCTGGTGCGCACCGATCGCCACAAT
CACCGCCGCGTCGCCGGTGACTCCGCTGATACCGAGGCGGTCAAAGTGCTGGCCCGGGCACATCAGAATCTGATCTGGACCCGCAATCGGCACACCAACG
CGCTGCGCTCGGCGCTGCGCGAGTACTACCCAGGCGCGCTGGAGGCGTTCGACGATCTGCACGACCGCGACGCTCTGGCGATCCTGGGCCGAGCGCCCAC
CCCCATGCAAGCGGCGAACCTGAGTCTGTCGAAGATCCGGTCTGCACTCAAAGCCGCTGGGCGACAACGCAACCTCGACACCGTCGCCCAGGACATTCAA
ACCGCTTTACGCGCTGAGCAGCTCGCCGCCCCTGCCGCGGTCACCGCCGCGTTCGGCGCAACCACCCGCGCCACGGTCGGCATCATCGCTGAACTGAACC
GCCAGATCACCGACCTTGAGGCCGAACTGGCAACACATTTTGAGACACACCCGGACGCCGACATCTACCGCTCCCTGCCAGGACTTGGTGTCATCCTCGG
CGCCCGGGTGCTCGGTGAGTTCGGGGACGACCCGAACAGGTACACCACCGCCAAGTGTCGCAAAAACTACGCCGGAACGTCGCCGCTGACCGTCGCCTCC
GGCCGCAAACGCGCCGTGCTGGCCCGCCACGTCCGCAACCGCCGGCTCTACGACGCGATCGACCAATGGGCCTTCTGCGCCCTGAACACCAGCCCCGGCG
CCCGCCTGTTCTACGACCGGCGTCGCGCTGCCGGCGACCTCCACCACCAAGCGCTACGCGCCCTCGGTAACCGCCTCGTAGGCATCCTCCACGGCTGCCT
ACGACACCGAACCCACTACGACGAACACAAAGCCTGGGCACACCGCCAAACCAACCCCGACTCCCAGGCGGCTTGACAACTTACGGACCTGGGATGTCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1224 bp | 407 aa | 253 | 1476 | + | No |
Chemistry : DEDD
ORF sequence :
MIFVGDDWAEDHHDVHLMDESGARLASRRLPEGLAGIGEFHQLLARHAEEPDQVVIGIETDRGLWVEALTAADYQVYAINPMAAARYRDRHHVSGAKSDA
GDAKLLADLVRTDRHNHRRVAGDSADTEAVKVLARAHQNLIWTRNRHTNALRSALREYYPGALEAFDDLHDRDALAILGRAPTPMQAANLSLSKIRSALK
AAGRQRNLDTVAQDIQTALRAEQLAAPAAVTAAFGATTRATVGIIAELNRQITDLEAELATHFETHPDADIYRSLPGLGVILGARVLGEFGDDPNRYTTA
KCRKNYAGTSPLTVASGRKRAVLARHVRNRRLYDAIDQWAFCALNTSPGARLFYDRRRAAGDLHHQALRALGNRLVGILHGCLRHRTHYDEHKAWAHRQT
NPDSQAA
GDAKLLADLVRTDRHNHRRVAGDSADTEAVKVLARAHQNLIWTRNRHTNALRSALREYYPGALEAFDDLHDRDALAILGRAPTPMQAANLSLSKIRSALK
AAGRQRNLDTVAQDIQTALRAEQLAAPAAVTAAFGATTRATVGIIAELNRQITDLEAELATHFETHPDADIYRSLPGLGVILGARVLGEFGDDPNRYTTA
KCRKNYAGTSPLTVASGRKRAVLARHVRNRRLYDAIDQWAFCALNTSPGARLFYDRRRAAGDLHHQALRALGNRLVGILHGCLRHRTHYDEHKAWAHRQT
NPDSQAA
Blast result :
Comments
References
1] Olsen,I., Johansen,T.B., Billman-Jacobe,H., Nilsen,S.F. and Djonne,B.(2004) Vet. Microbiol. 98 (3-4), 297-306