ISPst9
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ582631 | ND | Pseudomonas stutzeri | Pseudomonas stutzeri AN142 |
DNA section
IS Length : 2472 bp
Ends
IR Length : 24
IRL : GGGTATGCGGATTTAATGGTTGATATGTGAAGTAGAAAGCGGAAGGGAAA
IRR : GGGTATGCGGATTTAATGGTTGATGGGGCACCTTCCCCTCACCAACCTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACCGAAGTTG | ACAAATTC | TCCGT GGTGC | 8 |
DNA sequence
GGGTATGCGGATTTAATGGTTGATATGTGAAGTAGAAAGCGGAAGGGAAAACTAAATCCACAACGGACTAAATGGTTGATAGCTAACCGTGCCGGTCTTT
CCAGATCCCCTTCCCTATAGCCATATGTAGGGAACACTTGAAAACTAGGCATATCTGTCTTGACAATAGCCCCGGTACAAGAAGCGGGTGTCGTTGTGCT
CAGCCAGCCTTTCTTCGCCAAAAGCAATATTGCCACGAAGGGTGGTAGCCTACGGGCTCAGTACCTCCCCAGTTGGGTCATCGCCCGGCTAGAAGGTATT
GAGGCGGCTCGGGGTGCATTGCACCATGTCGCGCCGGTCGGCAAGATGGAAGACTACATTGAGCGGATGTTGCGTAATGTCACGTCCCACCTCTGAACGA
GGTGCACTGACCATGCATATCCAACCTACTCCCTTGAGGTCACAACAAAGCTAATGATCGATCTACTTGTTTTCCTCCCGGCATGTTTCGCACTGAACCT
GGCGTTCGGCCCCAATAACCTCGTTGCGATGACACACGGTGCGCAAAAGGGCGTAGGGTTTTCCTTTATGGCAAGCACAGCACGGCTTGCCGTCTTCGTG
CCCATGATTGCTGCTAGCGCGCTTGGTTTAGGGATGCTTTTGTCTGCTTCGGCGTTGGTCTTCAACGTGATCAAGATCGTTGGTGCCGCCTATCTGGTCT
GGATGGGCATCAAGCTCCTCAGAACAACATCTGGCTCGACTAACCTAAACGCAGATGCAATGAAACCTTCGCTTCGTAAGGCATTCCGTAGTGAGGCGCT
GATCGCCATCAGTAACCCCAAAGCAATCCTCATTTTCGCGGCATTCTTCCCGCAATTCGTGGATATAACGAATTACTGGCTGAGCTATGCAACTCTTGGG
ACGGTTTTTATCGCGCTAGAGGCCGTTGCAATAGCGATATATGCGTCAGCAGGGCGTTTTGCAGCAGCTTTCGCAGCAAACAAGCTGCACTGGTTTCAAC
GCGCCTCAGGTGGAGGAATGATTGCTTTCGGCATCCTGCTTCTTCTTAGTCGCCAACCTTCGCGTGTTGCCTAGGTTCTTAAGAACGCTTTAGCCAGTTG
CTAGTCGTCTTAAGAGAATAACGTATGACCGAAATGCCCGACAACATCCTGCACCTGCCCTCATACCAGGTGCTGGGCTGCAAAGCCACCGACGATGAAA
TGCACTTCCAGGTAGACGCGCCCGATCCCATTGCTTGCGAGGAATGCGGGGTGCAGGGTGAGTTCGTGCGTTTCGGCAAGCGTGATGTTCCCTATCATGA
TCTGCCCATCCACGGCAAGCGGGTCACCCTCTGGGTGCTCCGCCGCCGGTACATCTGTCGGGCCTGCGAGGCTACCTTCAGGCCCCAGCTACCGGAGGTG
GTGGACGGCTTCCGCATGACACTGCGGCTACATGAATACGTAGAGAAGGAGTCCTTTAACCACCCCTACACTTTCGTGGCGCAGCAAACCGGATTGGACG
AGAAGACGGTACGGGACATCTTCAACGCCCGCGCCGCGTTCTTAGGCCGCTGGCACCGCTTCGAAACGCCTCGCATTCTGGGCATCGACGAGCTGTACCT
GAACAAGCGCTACCGCTGCATCCTGACCAACATTGAGGAGAAGACCCTGCTCGATCTGCTGGCCACTCGCCGTCAGGACGTCGTGACTAACTACCTGATG
AAGCTGAAAGACCGGCAGAAGATCGATATCGTCAGCATGGACATGTGGAATCCATATCGAACGGCGGTCAGGGCGGTGCTGCCACAGGCCCGCATCGTGG
TCGATAAATTCCATGTGGTGCGCATGGCCAACGATGCTCTGGAGAAGGTGCGCAAGGGGCTCCGGAAAGAGCTGAAACCAGCCCAGATCCGAACCCTCAA
GGGAGACCGGAAAATCCTGCTGAAGCGCGCTCACGAAGTCTCAGACCGGGAGCGGCTGATCATGGAAACCTGGACAGGCGCATTCCCGCAACTGCTGGCT
GCCTACGAGCACAAGGAGCGCTTCTACAGCATCTGGGACGCCACCACACGACCCCAGGCAGAAGCCGCCCTGGACGAGTGGATATCCACCATCCCGAAGG
GCCAGAGAGAAGTCTGGAGCGATCTGTTTAGGGCGGTGGGCAACTGGCGCGAAGAGATCATGACCTACTTCGAGACGGACATACCTGTCACCAACGCTTT
CACGGAGTCCATCAACCGACTGGCCAAGGACAAGAACCGTGAAGGACGAGGTTATTCCTTTGAGGTGATGCGGGCGCGAATGCTCTACACCACGAAGCAC
AAGAAGAAGGCCCCGACTGCGAAGGTCTCTCCGTTCTACAAGAAAACCATCGGTTACGGACTGCCAGACCTCGCAGAGGAGCTCAACTACGGGGTCGATC
TATCAACCATCTGAGGGTAGCATCAGGTTGGTGAGGGGAAGGTGCCCCATCAACCATTAAATCCGCATACCC
CCAGATCCCCTTCCCTATAGCCATATGTAGGGAACACTTGAAAACTAGGCATATCTGTCTTGACAATAGCCCCGGTACAAGAAGCGGGTGTCGTTGTGCT
CAGCCAGCCTTTCTTCGCCAAAAGCAATATTGCCACGAAGGGTGGTAGCCTACGGGCTCAGTACCTCCCCAGTTGGGTCATCGCCCGGCTAGAAGGTATT
GAGGCGGCTCGGGGTGCATTGCACCATGTCGCGCCGGTCGGCAAGATGGAAGACTACATTGAGCGGATGTTGCGTAATGTCACGTCCCACCTCTGAACGA
GGTGCACTGACCATGCATATCCAACCTACTCCCTTGAGGTCACAACAAAGCTAATGATCGATCTACTTGTTTTCCTCCCGGCATGTTTCGCACTGAACCT
GGCGTTCGGCCCCAATAACCTCGTTGCGATGACACACGGTGCGCAAAAGGGCGTAGGGTTTTCCTTTATGGCAAGCACAGCACGGCTTGCCGTCTTCGTG
CCCATGATTGCTGCTAGCGCGCTTGGTTTAGGGATGCTTTTGTCTGCTTCGGCGTTGGTCTTCAACGTGATCAAGATCGTTGGTGCCGCCTATCTGGTCT
GGATGGGCATCAAGCTCCTCAGAACAACATCTGGCTCGACTAACCTAAACGCAGATGCAATGAAACCTTCGCTTCGTAAGGCATTCCGTAGTGAGGCGCT
GATCGCCATCAGTAACCCCAAAGCAATCCTCATTTTCGCGGCATTCTTCCCGCAATTCGTGGATATAACGAATTACTGGCTGAGCTATGCAACTCTTGGG
ACGGTTTTTATCGCGCTAGAGGCCGTTGCAATAGCGATATATGCGTCAGCAGGGCGTTTTGCAGCAGCTTTCGCAGCAAACAAGCTGCACTGGTTTCAAC
GCGCCTCAGGTGGAGGAATGATTGCTTTCGGCATCCTGCTTCTTCTTAGTCGCCAACCTTCGCGTGTTGCCTAGGTTCTTAAGAACGCTTTAGCCAGTTG
CTAGTCGTCTTAAGAGAATAACGTATGACCGAAATGCCCGACAACATCCTGCACCTGCCCTCATACCAGGTGCTGGGCTGCAAAGCCACCGACGATGAAA
TGCACTTCCAGGTAGACGCGCCCGATCCCATTGCTTGCGAGGAATGCGGGGTGCAGGGTGAGTTCGTGCGTTTCGGCAAGCGTGATGTTCCCTATCATGA
TCTGCCCATCCACGGCAAGCGGGTCACCCTCTGGGTGCTCCGCCGCCGGTACATCTGTCGGGCCTGCGAGGCTACCTTCAGGCCCCAGCTACCGGAGGTG
GTGGACGGCTTCCGCATGACACTGCGGCTACATGAATACGTAGAGAAGGAGTCCTTTAACCACCCCTACACTTTCGTGGCGCAGCAAACCGGATTGGACG
AGAAGACGGTACGGGACATCTTCAACGCCCGCGCCGCGTTCTTAGGCCGCTGGCACCGCTTCGAAACGCCTCGCATTCTGGGCATCGACGAGCTGTACCT
GAACAAGCGCTACCGCTGCATCCTGACCAACATTGAGGAGAAGACCCTGCTCGATCTGCTGGCCACTCGCCGTCAGGACGTCGTGACTAACTACCTGATG
AAGCTGAAAGACCGGCAGAAGATCGATATCGTCAGCATGGACATGTGGAATCCATATCGAACGGCGGTCAGGGCGGTGCTGCCACAGGCCCGCATCGTGG
TCGATAAATTCCATGTGGTGCGCATGGCCAACGATGCTCTGGAGAAGGTGCGCAAGGGGCTCCGGAAAGAGCTGAAACCAGCCCAGATCCGAACCCTCAA
GGGAGACCGGAAAATCCTGCTGAAGCGCGCTCACGAAGTCTCAGACCGGGAGCGGCTGATCATGGAAACCTGGACAGGCGCATTCCCGCAACTGCTGGCT
GCCTACGAGCACAAGGAGCGCTTCTACAGCATCTGGGACGCCACCACACGACCCCAGGCAGAAGCCGCCCTGGACGAGTGGATATCCACCATCCCGAAGG
GCCAGAGAGAAGTCTGGAGCGATCTGTTTAGGGCGGTGGGCAACTGGCGCGAAGAGATCATGACCTACTTCGAGACGGACATACCTGTCACCAACGCTTT
CACGGAGTCCATCAACCGACTGGCCAAGGACAAGAACCGTGAAGGACGAGGTTATTCCTTTGAGGTGATGCGGGCGCGAATGCTCTACACCACGAAGCAC
AAGAAGAAGGCCCCGACTGCGAAGGTCTCTCCGTTCTACAAGAAAACCATCGGTTACGGACTGCCAGACCTCGCAGAGGAGCTCAACTACGGGGTCGATC
TATCAACCATCTGAGGGTAGCATCAGGTTGGTGAGGGGAAGGTGCCCCATCAACCATTAAATCCGCATACCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
621 bp | 206 aa | 454 | 1074 | + | No |
Annotation : LysE-like proteinDescription :
ORF sequence :
MIDLLVFLPACFALNLAFGPNNLVAMTHGAQKGVGFSFMASTARLAVFVPMIAASALGLGMLLSASALVFNVIKIVGAAYLVWMGIKLLRTTSGSTNLNA
DAMKPSLRKAFRSEALIAISNPKAILIFAAFFPQFVDITNYWLSYATLGTVFIALEAVAIAIYASAGRFAAAFAANKLHWFQRASGGGMIAFGILLLLSR
QPSRVA
DAMKPSLRKAFRSEALIAISNPKAILIFAAFFPQFVDITNYWLSYATLGTVFIALEAVAIAIYASAGRFAAAFAANKLHWFQRASGGGMIAFGILLLLSR
QPSRVA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1290 bp | 429 aa | 1125 | 2414 | + | No |
Chemistry : Unknow
ORF sequence :
MTEMPDNILHLPSYQVLGCKATDDEMHFQVDAPDPIACEECGVQGEFVRFGKRDVPYHDLPIHGKRVTLWVLRRRYICRACEATFRPQLPEVVDGFRMTL
RLHEYVEKESFNHPYTFVAQQTGLDEKTVRDIFNARAAFLGRWHRFETPRILGIDELYLNKRYRCILTNIEEKTLLDLLATRRQDVVTNYLMKLKDRQKI
DIVSMDMWNPYRTAVRAVLPQARIVVDKFHVVRMANDALEKVRKGLRKELKPAQIRTLKGDRKILLKRAHEVSDRERLIMETWTGAFPQLLAAYEHKERF
YSIWDATTRPQAEAALDEWISTIPKGQREVWSDLFRAVGNWREEIMTYFETDIPVTNAFTESINRLAKDKNREGRGYSFEVMRARMLYTTKHKKKAPTAK
VSPFYKKTIGYGLPDLAEELNYGVDLSTI
RLHEYVEKESFNHPYTFVAQQTGLDEKTVRDIFNARAAFLGRWHRFETPRILGIDELYLNKRYRCILTNIEEKTLLDLLATRRQDVVTNYLMKLKDRQKI
DIVSMDMWNPYRTAVRAVLPQARIVVDKFHVVRMANDALEKVRKGLRKELKPAQIRTLKGDRKILLKRAHEVSDRERLIMETWTGAFPQLLAAYEHKERF
YSIWDATTRPQAEAALDEWISTIPKGQREVWSDLFRAVGNWREEIMTYFETDIPVTNAFTESINRLAKDKNREGRGYSFEVMRARMLYTTKHKKKAPTAK
VSPFYKKTIGYGLPDLAEELNYGVDLSTI
Blast result :
Comments
ISPst9 transposase is 96% aa similar to ISPpu12 transposase (ORF4) and IS1396 and 92% to ISPst2.
Another possible ORF was found and the product showed a certain degree of similarity to bacterial transporter LysE.
Another possible ORF was found and the product showed a certain degree of similarity to bacterial transporter LysE.
References
1] Bosch,R. and Lalucat,J. (2003) Direct submission GenBank