ISSau6
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_002952 | ND | Staphylococcus aureus | Staphylococcus aureus subsp. aureus MRSA252 |
DNA section
IS Length : 793 bp
Ends
IR Length : 21/22
IRL : GGTTCTGTTGCAAAGTTAGAAATATAGTATAATAGTCAACAAAAATGAGG
IRR : GGTTCTGTTGCAAAGTTAAAAAATAAGTGTCTAACCTTATGTTTAAAATA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
GGTTCTGTTGCAAAGTTAGAAATATAGTATAATAGTCAACAAAAATGAGGTGCAGAGGATGAATTATTTCAGATATAAGCAATTTGACAAAGATGTCATT
ACTGTAGCCGTTGGCTACTATCTAAGATATGCATTAAGTTATCGTGATATATCTGAAATATTGAGAGAACGAGGCATCTATGTTCATCATTCAACAATTT
ATCGATGGGTACAGGAATATGCTCCTATTTTGTATCAAATTTGGAAGAAAAAGAATAAGCAAGCTTATTATAAATGGCATATAGATGAGACGTATATCAA
AATTAAAGGGCAATGGAATTATTTATATCGCGCTATTGATGCAGATGGCCATACACTAGATATTTCGTTACGTAAGAAACGAGATAATCACTCAGCATAT
ACGTTTATTAAACGTCTTATTAAACAATTTGGCAAACCTCAAATGATAATTACAGACCAAGCCCCTTCAACGAAGGTGGCAATGTCCAAAGTGATTAAAG
ATTTTAAACTTACCCCCAACTGTCATTGTACCTCTAAATATTTAAATAATCTCATTGAACAAGATCATCGTCATATCAAAGTAAGGAAAATAAGTTATCA
AAGTATCAATACGGCAAAGAATACGATCAAAGGCATTGAATGTATTTATGGACTATATAAAAAGAACCGCAGATCTCTTCAGATCTACGGGTTTTCGCCA
TGCCGTGTAATTAGCATCATGCTAGCTAGTTAATACGAAGTATTATTTTAAACATAAGGTTAGACACTTATTTTTTAACTTTGCAACAGAACC
ACTGTAGCCGTTGGCTACTATCTAAGATATGCATTAAGTTATCGTGATATATCTGAAATATTGAGAGAACGAGGCATCTATGTTCATCATTCAACAATTT
ATCGATGGGTACAGGAATATGCTCCTATTTTGTATCAAATTTGGAAGAAAAAGAATAAGCAAGCTTATTATAAATGGCATATAGATGAGACGTATATCAA
AATTAAAGGGCAATGGAATTATTTATATCGCGCTATTGATGCAGATGGCCATACACTAGATATTTCGTTACGTAAGAAACGAGATAATCACTCAGCATAT
ACGTTTATTAAACGTCTTATTAAACAATTTGGCAAACCTCAAATGATAATTACAGACCAAGCCCCTTCAACGAAGGTGGCAATGTCCAAAGTGATTAAAG
ATTTTAAACTTACCCCCAACTGTCATTGTACCTCTAAATATTTAAATAATCTCATTGAACAAGATCATCGTCATATCAAAGTAAGGAAAATAAGTTATCA
AAGTATCAATACGGCAAAGAATACGATCAAAGGCATTGAATGTATTTATGGACTATATAAAAAGAACCGCAGATCTCTTCAGATCTACGGGTTTTCGCCA
TGCCGTGTAATTAGCATCATGCTAGCTAGTTAATACGAAGTATTATTTTAAACATAAGGTTAGACACTTATTTTTTAACTTTGCAACAGAACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 675 bp | 224 aa | 59 | 733 | + | No |
Chemistry : DDE
ORF sequence :
MNYFRYKQFDKDVITVAVGYYLRYALSYRDISEILRERGIYVHHSTIYRWVQEYAPILYQIWKKKNKQAYYKWHIDETYIKIKGQWNYLYRAIDADGHTL
DISLRKKRDNHSAYTFIKRLIKQFGKPQMIITDQAPSTKVAMSKVIKDFKLTPNCHCTSKYLNNLIEQDHRHIKVRKISYQSINTAKNTIKGIECIYGLY
KKNRRSLQIYGFSPCRVISIMLAS
DISLRKKRDNHSAYTFIKRLIKQFGKPQMIITDQAPSTKVAMSKVIKDFKLTPNCHCTSKYLNNLIEQDHRHIKVRKISYQSINTAKNTIKGIECIYGLY
KKNRRSLQIYGFSPCRVISIMLAS
Blast result :
Comments
ISSau6 is 95% aa similar to IS431L.
There are 2 full copies in Staphylococcus aureus subsp. aureus MRSA252 genome.
There are 2 full copies in Staphylococcus aureus subsp. aureus MRSA252 genome.
References
1] Holden,M.T.G., Feil,E.J., Lindsay,J.A., Peacock,S.J., Day,N.P.J., Enright,M.C., Foster,T.J., Moore,C.E., Hurst,L., Atkin,R., Barron,A., Bason,N., Bentley,S.D., Chillingworth,C., Chillingworth,T., Churcher,C., Clark,L., Corton,C., Cronin,A., Doggett,J., Dowd,L., Feltwell,T., Hance,Z., Harris,B., Hauser,H., Holroyd,S., Jagels,K., James,K.D., Lennard,N., Line,A., Mayes,R., Moule,S., Mungall,K., Ormond,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Sanders,M., Sharp,S., Simmonds,M., Stevens,K., Whitehead,S., Barrell,B.G., Spratt,B.G. and Parkhill,J.(2004)Proc. Natl. Acad. Sci. U.S.A. 101 (26), 9786-9791