ISSau5
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002952 | ND | Staphylococcus aureus | Staphylococcus aureus subsp. aureus MRSA252 |
DNA section
IS Length : 1136 bp
Ends
IR Length : 7/12
IRL : CAACTCCCTATACGCTTTAGCGGTGGTATTGGGAGTTGATGAACATATAT
IRR : GATGAACCTATATTAATTGACGGGTTCGTGCCTCACACAGTCATTTAATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CAACTCCCTATACGCTTTAGCGGTGGTATTGGGAGTTGATGAACATATATCCTCTTATAACTTATTTTATAAATAACCTTTTTAAAAGTAAAGGAGGATA
TACATGAAAAAAAGAAAAAAACGTAAAGAATTAGACTATAAAACACGTCTAGCTATCGCAAAGTATTTAAATGATGGTTTAAACATCATTCAGATTTCTA
AGATTTTAGGTCGTGATGATGCGGTTCTTTATAGAGAAGTAAATAAACGTTCTGTTGATGGTGTTTATAATCCTTTATTAGCTGAGGAAGATGCTATAAA
ATCGCGTAGTATTTCAGATGAACAAGTTGCTAAACGTAGACGTTTGAATGATGAAACAAAAGCATATATTGAAGAAAAACTTTCATTAAAATGGTCTCCT
AGACAGATAGCAAGTCAAATTGAAAAAGATACAGGGCATTATATAAGTTATCCTACTATATATAGATATATTCGCAATGGATTGGTAAAAGTTGATGTTA
AGCGTGATATGAGACAAGCAGGCAAGAAATATAATAAGTCTTCTGAAAAGCGTGGCAAATTAGACGTAGGGTCTCGTGTTATAAAGTATCGGCTCAAAAA
GTATTAATAATCGTGAAGAATTTGGACATTATGAAATTGATACTGTTTGGAGTGTTAGACCATCAACATATTGCTTGTTAACTATTATTGAAAGAAAAAC
AAGATATTTATATGCTAGTAGATTAAATACACGTAAATCCAATGTAGTTTGTAATGAGATTATAAATATTATGAAACCATTATTACCCAAAAGTATAACT
ATGGATAGAGGTAAGGAGTTTGCTCTATTTAAACAAATAGAAGATGAATTGAATTGTAGTATTTATTTTAGTGATTTGGGTTGTCCATATCAACGTGGTT
CCATTGAAAATGCAAATGGACTTTTAAGACAGTATTATCCTAAAGGTACGGATTTTGCAAATATAACACAAAAGTCATTAGATGAAGCTGTTAAACAAAT
TAATGCACGACCTCGAATGATATTTGACTATAAATCGAGTGAGGAAATGCTAAAGTACCATGTAAGCACACAAAATTGTGAACCTATATTAAATGACTGT
GTGAGGCACGAACCCGTCAATTAATATAGGTTCATC
TACATGAAAAAAAGAAAAAAACGTAAAGAATTAGACTATAAAACACGTCTAGCTATCGCAAAGTATTTAAATGATGGTTTAAACATCATTCAGATTTCTA
AGATTTTAGGTCGTGATGATGCGGTTCTTTATAGAGAAGTAAATAAACGTTCTGTTGATGGTGTTTATAATCCTTTATTAGCTGAGGAAGATGCTATAAA
ATCGCGTAGTATTTCAGATGAACAAGTTGCTAAACGTAGACGTTTGAATGATGAAACAAAAGCATATATTGAAGAAAAACTTTCATTAAAATGGTCTCCT
AGACAGATAGCAAGTCAAATTGAAAAAGATACAGGGCATTATATAAGTTATCCTACTATATATAGATATATTCGCAATGGATTGGTAAAAGTTGATGTTA
AGCGTGATATGAGACAAGCAGGCAAGAAATATAATAAGTCTTCTGAAAAGCGTGGCAAATTAGACGTAGGGTCTCGTGTTATAAAGTATCGGCTCAAAAA
GTATTAATAATCGTGAAGAATTTGGACATTATGAAATTGATACTGTTTGGAGTGTTAGACCATCAACATATTGCTTGTTAACTATTATTGAAAGAAAAAC
AAGATATTTATATGCTAGTAGATTAAATACACGTAAATCCAATGTAGTTTGTAATGAGATTATAAATATTATGAAACCATTATTACCCAAAAGTATAACT
ATGGATAGAGGTAAGGAGTTTGCTCTATTTAAACAAATAGAAGATGAATTGAATTGTAGTATTTATTTTAGTGATTTGGGTTGTCCATATCAACGTGGTT
CCATTGAAAATGCAAATGGACTTTTAAGACAGTATTATCCTAAAGGTACGGATTTTGCAAATATAACACAAAAGTCATTAGATGAAGCTGTTAAACAAAT
TAATGCACGACCTCGAATGATATTTGACTATAAATCGAGTGAGGAAATGCTAAAGTACCATGTAAGCACACAAAATTGTGAACCTATATTAAATGACTGT
GTGAGGCACGAACCCGTCAATTAATATAGGTTCATC
Recoding section
- Recoding by frameshift
- Frame +1
- Type unknow
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence : No
- Secondary structure : No-structure
Recoding motif :
AGTATCGGCTC AAAAAG TATTAATAATCGT
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
492 bp | 163 aa | 104 | 595 | + | No |
Description : First part of the transposase
ORF sequence :
MKKRKKRKELDYKTRLAIAKYLNDGLNIIQISKILGRDDAVLYREVNKRSVDGVYNPLLAEEDAIKSRSISDEQVAKRRRLNDETKAYIEEKLSLKWSPR
QIASQIEKDTGHYISYPTIYRYIRNGLVKVDVKRDMRQAGKKYNKSSEKRGKLDVGSRVIKYRLKKY
QIASQIEKDTGHYISYPTIYRYIRNGLVKVDVKRDMRQAGKKYNKSSEKRGKLDVGSRVIKYRLKKY
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
528 bp | 175 aa | 597 | 1124 | + | No |
Description : Second part of the transposase
ORF sequence :
SIGSKSINNREEFGHYEIDTVWSVRPSTYCLLTIIERKTRYLYASRLNTRKSNVVCNEIINIMKPLLPKSITMDRGKEFALFKQIEDELNCSIYFSDLGC
PYQRGSIENANGLLRQYYPKGTDFANITQKSLDEAVKQINARPRMIFDYKSSEEMLKYHVSTQNCEPILNDCVRHEPVN
PYQRGSIENANGLLRQYYPKGTDFANITQKSLDEAVKQINARPRMIFDYKSSEEMLKYHVSTQNCEPILNDCVRHEPVN
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1021 bp | 340 aa | 104 | 1124 | + | Yes |
Chemistry : DDE
ORF sequence :
MKKRKKRKELDYKTRLAIAKYLNDGLNIIQISKILGRDDAVLYREVNKRSVDGVYNPLLAEEDAIKSRSISDEQVAKRRRLNDETKAYIEEKLSLKWSPR
QIASQIEKDTGHYISYPTIYRYIRNGLVKVDVKRDMRQAGKKYNKSSEKRGKLDVGSRVIKYRLKKSINNREEFGHYEIDTVWSVRPSTYCLLTIIERKT
RYLYASRLNTRKSNVVCNEIINIMKPLLPKSITMDRGKEFALFKQIEDELNCSIYFSDLGCPYQRGSIENANGLLRQYYPKGTDFANITQKSLDEAVKQI
NARPRMIFDYKSSEEMLKYHVSTQNCEPILNDCVRHEPVN
QIASQIEKDTGHYISYPTIYRYIRNGLVKVDVKRDMRQAGKKYNKSSEKRGKLDVGSRVIKYRLKKSINNREEFGHYEIDTVWSVRPSTYCLLTIIERKT
RYLYASRLNTRKSNVVCNEIINIMKPLLPKSITMDRGKEFALFKQIEDELNCSIYFSDLGCPYQRGSIENANGLLRQYYPKGTDFANITQKSLDEAVKQI
NARPRMIFDYKSSEEMLKYHVSTQNCEPILNDCVRHEPVN
Blast result :
Comments
ISSau5 is 57% aa similar to ISSau1. The end are not clearely determined. There is a potential frameshift.
There are 1 full copy in Staphylococcus aureus subsp. aureus MRSA252 genome.
There are 1 full copy in Staphylococcus aureus subsp. aureus MRSA252 genome.
References
1] Holden,M.T.G., Feil,E.J., Lindsay,J.A., Peacock,S.J., Day,N.P.J., Enright,M.C., Foster,T.J., Moore,C.E., Hurst,L., Atkin,R., Barron,A., Bason,N., Bentley,S.D., Chillingworth,C., Chillingworth,T., Churcher,C., Clark,L., Corton,C., Cronin,A., Doggett,J., Dowd,L., Feltwell,T., Hance,Z., Harris,B., Hauser,H., Holroyd,S., Jagels,K., James,K.D., Lennard,N., Line,A., Mayes,R., Moule,S., Mungall,K., Ormond,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Sanders,M., Sharp,S., Simmonds,M., Stevens,K., Whitehead,S., Barrell,B.G., Spratt,B.G. and Parkhill,J.(2004)Proc. Natl. Acad. Sci. U.S.A. 101 (26), 9786-9791