ISNgo3
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002946 | ND | Neisseria gonorrhoeae | Neisseria meningitidis Neisseria gonorrhoeae |
DNA section
IS Length : 1121 bp
Ends
Left end : AGGAAAATACCAATGAATATAATCGGGCCGGACATCTCAAAGGACACCATAGACGCAACATTGCATAAAACAAACGGAAGTATCCATTACATTAAATTTA
Right end : GCATATCGTAAATAAACGTAAATAAAAATAACAATATAAATCAGCATGTTGCAACTTTGTTTTTTATTTTGTGTTGACGGGCAACATATCATCTGCGCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTATAAATA | AAAGTTACCG | 0 | |
TGTATAAATA | GAATGACGGG | 0 | |
TGTATAAATA | GAATGACGGC | 0 |
DNA sequence
AGGAAAATACCAATGAATATAATCGGGCCGGACATCTCAAAGGACACCATAGACGCAACATTGCATAAAACAAACGGAAGTATCCATTACATTAAATTTA
AGAATAATGATGATGGATTAAAACAGTTTAGATTGTGGATAAAGGGAAACAGAATCAGAAAAGTCTATATCGGCATGGAGGCAACAGGCATCTATTACGA
AAAGGCAGCAGATATGCTTTCTTCCTACTATACCGTTTACGTTATCAATCCCTTAAAAATCAAGGACTACGGAAAAAGCAGGTTTAACCGCACCAAAACC
GACAAAGCAGATTCAAACCTGATAGCAGATTACATAAAAAGGCATCAAGATACATTGATACCGTATCAGATACCCAAAAACAAAGCACTGCAAAAACTGA
TTAATCTTAAAAACCAATTACAGCAACAGCAGAAGCAAATTAAAAACCGTCTTCATAGCACTGAAGAAGACTTCATAAGGAACATACATCAAGACTTGAT
AGATACCATACAGGACAAGATGGAACAGGTAAAAATAGCCATATCCGAACAAATCAAAAAACAAACGGACAATAACCATTACCGCAATCTTCAAACCATC
CCGAGCATAGGCAAAGACACCGCATCAGTTCTTTATGCGCAACTGACAGAAAAACATTTTAAAACCGCAAACCAATTTGTATCCTATGCCGGATTAAGTC
CCGCCATCATACAATCAGGGACAAGCGTAAGAGGTCGGGGCAGATTGAGCCGATACGGAAACAGACGATTAAAAAGTACGCTGTATATGCCCGCCCTTTG
TGCTTACCGTTTTAACGCATTTCCGAAATTAATAAATAATCTGAAAAAAGCGGGTAAGCCAAAGATGGTAATTATCGTTGCCATCATGCGCAAACTGGCG
AAGCCCGCCTATTACATTGTTAAAACCGGCCAGCCTTACGATGCGGAAAGACACCGATTGAATCAATAAAATTCAACAAAATTAAACGGTTGCGCGAATA
TATTTGTGTAACCGTGCATTTGCATATCGTAAATAAACGTAAATAAAAATAACAATATAAATCAGCATGTTGCAACTTTGTTTTTTATTTTGTGTTGACG
GGCAACATATCATCTGCGCGG
AGAATAATGATGATGGATTAAAACAGTTTAGATTGTGGATAAAGGGAAACAGAATCAGAAAAGTCTATATCGGCATGGAGGCAACAGGCATCTATTACGA
AAAGGCAGCAGATATGCTTTCTTCCTACTATACCGTTTACGTTATCAATCCCTTAAAAATCAAGGACTACGGAAAAAGCAGGTTTAACCGCACCAAAACC
GACAAAGCAGATTCAAACCTGATAGCAGATTACATAAAAAGGCATCAAGATACATTGATACCGTATCAGATACCCAAAAACAAAGCACTGCAAAAACTGA
TTAATCTTAAAAACCAATTACAGCAACAGCAGAAGCAAATTAAAAACCGTCTTCATAGCACTGAAGAAGACTTCATAAGGAACATACATCAAGACTTGAT
AGATACCATACAGGACAAGATGGAACAGGTAAAAATAGCCATATCCGAACAAATCAAAAAACAAACGGACAATAACCATTACCGCAATCTTCAAACCATC
CCGAGCATAGGCAAAGACACCGCATCAGTTCTTTATGCGCAACTGACAGAAAAACATTTTAAAACCGCAAACCAATTTGTATCCTATGCCGGATTAAGTC
CCGCCATCATACAATCAGGGACAAGCGTAAGAGGTCGGGGCAGATTGAGCCGATACGGAAACAGACGATTAAAAAGTACGCTGTATATGCCCGCCCTTTG
TGCTTACCGTTTTAACGCATTTCCGAAATTAATAAATAATCTGAAAAAAGCGGGTAAGCCAAAGATGGTAATTATCGTTGCCATCATGCGCAAACTGGCG
AAGCCCGCCTATTACATTGTTAAAACCGGCCAGCCTTACGATGCGGAAAGACACCGATTGAATCAATAAAATTCAACAAAATTAAACGGTTGCGCGAATA
TATTTGTGTAACCGTGCATTTGCATATCGTAAATAAACGTAAATAAAAATAACAATATAAATCAGCATGTTGCAACTTTGTTTTTTATTTTGTGTTGACG
GGCAACATATCATCTGCGCGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
957 bp | 318 aa | 13 | 969 | + | No |
Chemistry : DEDD
ORF sequence :
MNIIGPDISKDTIDATLHKTNGSIHYIKFKNNDDGLKQFRLWIKGNRIRKVYIGMEATGIYYEKAADMLSSYYTVYVINPLKIKDYGKSRFNRTKTDKAD
SNLIADYIKRHQDTLIPYQIPKNKALQKLINLKNQLQQQQKQIKNRLHSTEEDFIRNIHQDLIDTIQDKMEQVKIAISEQIKKQTDNNHYRNLQTIPSIG
KDTASVLYAQLTEKHFKTANQFVSYAGLSPAIIQSGTSVRGRGRLSRYGNRRLKSTLYMPALCAYRFNAFPKLINNLKKAGKPKMVIIVAIMRKLAKPAY
YIVKTGQPYDAERHRLNQ
SNLIADYIKRHQDTLIPYQIPKNKALQKLINLKNQLQQQQKQIKNRLHSTEEDFIRNIHQDLIDTIQDKMEQVKIAISEQIKKQTDNNHYRNLQTIPSIG
KDTASVLYAQLTEKHFKTANQFVSYAGLSPAIIQSGTSVRGRGRLSRYGNRRLKSTLYMPALCAYRFNAFPKLINNLKKAGKPKMVIIVAIMRKLAKPAY
YIVKTGQPYDAERHRLNQ
Blast result :
Comments
The accession number provided is the web site for the full Neisseria gonorrhoeae genome sequence (http://www.genome.ou.edu/gono.html)
ISNgo3 is 51% aa similar to ISIMb1.
ISNgo3 is 51% aa similar to ISIMb1.
References
1] Skaar, E.P., B. LeCuyer, A.G. Lenich, M. P. Lazio, D. Perkins-Balding, H.S. Seifert, and A.C. Karls. 2004. Analysis of the Piv Recombinase-Related Gene Family of Neisseria gonorrhoeae. J. Bacteriol. submitted.