ISNgo2
- Family IS110
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_002946 | ND | Neisseria gonorrhoeae | Neisseria gonorrhoeae |
DNA section
IS Length : 1107 bp
Ends
Left end : AGGGTAATCCCATGCGTAACACCGTAGGATTGGACATATCCAAGCTGACATTTGACGCAACGGCCATGGTCGGCAAAACGGAGCATTCGGCAAAGTTTGA
Right end : CTGCTTTGCCGCGTCTGAAATCCGGTGAATTTTCAAATATTGAAATTCAATGGGTTGAAAATGAATTGTAAAAATGCTGTTGTCAATTAAAGTAGTATCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCCGCATATA | TATCTATTCA | 0 | |
| TGAATAGATA | CGTCATTCCT | 0 | |
| GCAATATATA | CCCACATCTT | 0 | |
| TGAATAGATA | CGTCATTCCC | 0 | |
| TGAATANATA | CGTCAATATC | 0 | |
| GCAATATATA | CGTCATGCTC | 0 |
DNA sequence
AGGGTAATCCCATGCGTAACACCGTAGGATTGGACATATCCAAGCTGACATTTGACGCAACGGCCATGGTCGGCAAAACGGAGCATTCGGCAAAGTTTGA
CAACGATTCAAAAGGTTTAGATCAGTTTTCGGACCGGTTGAAAAGCTTGGGATATCAGAATCTGCATATCTGCATGGAGGCAACCGGCAGTTATTATGAA
GAAGTTGCCGACTACTTCGCGCAGTATTACAGCGTTTACGTAGTGAACCCGCTGAAAATAAGCAAGTATGCAGAAAGCAGGTTCAAGCGAACCAAAACAG
ACAAACAGGATGCAAAACTGATAGCGCAGTATTGCCGGTCGGCGCAGGAAAGCGAGCTTGTAAAGAGGCAGAAGCCTACGGACGAGCAATACAGGCTTTC
ACGGATGACCGCAGCATACGCGCAAATCAAAAGCGAATGCGCGGCAATGAAAAACCGTCATCACGCGGCAAAAGATGAAGAAGCGGCCAAAGCATATGCG
GAAATCATCAAAGCCATGAATGAACAGCTTGAAGTTTTAAAGGAGAAGATAAAAGAGCAGACGGAGAAGCCTAACTGCAAGGAAGGCGTGAAGCGTCTTG
AAACCATACCGGCAATAGGCAGAATGACCGCAGCCGTATTGTTTCATCATCTAACATCTTCGAAATTTGAAACATCAAACAAATTTGCAGCATTCGCAGG
CTTAAGCCCGCAACAAAAAGAATCCGGGACAAGCGTAAGGGGAAAAGGCAAACTGACCAAGTTTGGCAACAGGAAATTACGCGCCGTCTTGTTTATGCCG
GCCATGGTCGCATACCGGATAAGGGCATTTCCCGACTTCATCAAAAGGCTGGAAGAAAAGAAGAAGCCTAAAAAAGTCATCATCGCAGCATTGATGCGTA
AACTCGCCGTTATTGCGTATCACGTACATAAGAAAGGCGGAGATTACGATCCATCGCGTTACAAATCGGCGTAAATCCCGAAAGGAAAAAAGGCATTTTT
TAAATGCCTGCTTTGCCGCGTCTGAAATCCGGTGAATTTTCAAATATTGAAATTCAATGGGTTGAAAATGAATTGTAAAAATGCTGTTGTCAATTAAAGT
AGTATCT
CAACGATTCAAAAGGTTTAGATCAGTTTTCGGACCGGTTGAAAAGCTTGGGATATCAGAATCTGCATATCTGCATGGAGGCAACCGGCAGTTATTATGAA
GAAGTTGCCGACTACTTCGCGCAGTATTACAGCGTTTACGTAGTGAACCCGCTGAAAATAAGCAAGTATGCAGAAAGCAGGTTCAAGCGAACCAAAACAG
ACAAACAGGATGCAAAACTGATAGCGCAGTATTGCCGGTCGGCGCAGGAAAGCGAGCTTGTAAAGAGGCAGAAGCCTACGGACGAGCAATACAGGCTTTC
ACGGATGACCGCAGCATACGCGCAAATCAAAAGCGAATGCGCGGCAATGAAAAACCGTCATCACGCGGCAAAAGATGAAGAAGCGGCCAAAGCATATGCG
GAAATCATCAAAGCCATGAATGAACAGCTTGAAGTTTTAAAGGAGAAGATAAAAGAGCAGACGGAGAAGCCTAACTGCAAGGAAGGCGTGAAGCGTCTTG
AAACCATACCGGCAATAGGCAGAATGACCGCAGCCGTATTGTTTCATCATCTAACATCTTCGAAATTTGAAACATCAAACAAATTTGCAGCATTCGCAGG
CTTAAGCCCGCAACAAAAAGAATCCGGGACAAGCGTAAGGGGAAAAGGCAAACTGACCAAGTTTGGCAACAGGAAATTACGCGCCGTCTTGTTTATGCCG
GCCATGGTCGCATACCGGATAAGGGCATTTCCCGACTTCATCAAAAGGCTGGAAGAAAAGAAGAAGCCTAAAAAAGTCATCATCGCAGCATTGATGCGTA
AACTCGCCGTTATTGCGTATCACGTACATAAGAAAGGCGGAGATTACGATCCATCGCGTTACAAATCGGCGTAAATCCCGAAAGGAAAAAAGGCATTTTT
TAAATGCCTGCTTTGCCGCGTCTGAAATCCGGTGAATTTTCAAATATTGAAATTCAATGGGTTGAAAATGAATTGTAAAAATGCTGTTGTCAATTAAAGT
AGTATCT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 964 bp | 321 aa | 12 | 975 | + | No |
Chemistry : DEDD
ORF sequence :
MRNTVGLDISKLTFDATAMVGKTEHSAKFDNDSKGLDQFSDRLKSLGYQNLHICMEATGSYYEEVADYFAQYYSVYVVNPLKISKYAESRFKRTKTDKQD
AKLIAQYCRSAQESELVKRQKPTDEQYRLSRMTAAYAQIKSECAAMKNRHHAAKDEEAAKAYAEIIKAMNEQLEVLKEKIKEQTEKPNCKEGVKRLETIP
AIGRMTAAVLFHHLTSSKFETSNKFAAFAGLSPQQKESGTSVRGKGKLTKFGNRKLRAVLFMPAMVAYRIRAFPDFIKRLEEKKKPKKVIIAALMRKLAV
IAYHVHKKGGDYDPSRYKSA
AKLIAQYCRSAQESELVKRQKPTDEQYRLSRMTAAYAQIKSECAAMKNRHHAAKDEEAAKAYAEIIKAMNEQLEVLKEKIKEQTEKPNCKEGVKRLETIP
AIGRMTAAVLFHHLTSSKFETSNKFAAFAGLSPQQKESGTSVRGKGKLTKFGNRKLRAVLFMPAMVAYRIRAFPDFIKRLEEKKKPKKVIIAALMRKLAV
IAYHVHKKGGDYDPSRYKSA
Blast result :
Comments
The web site for the full N. gonorrhoeae sequence (http://www.genome.ou.edu/gono.html) is given under the accession #.
ISNgo2 is 55% aa simialr to ISIMb1.
ISNgo2 is 55% aa simialr to ISIMb1.
References
1] Skaar, E.P., LeCuyer, B., Lenich, A.G., Lazio, M.P., Perkins-Balding, D., Seifert, H.S., and Karls, A.C. (2004). Analysis of the Piv Recombinase-Related Gene Family of Neisseria gonorrhoeae. J. Bacteriol. Submitted.