ISPa21
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa |
DNA section
IS Length : 1364 bp
Ends
IR Length : 13
IRL : ----tatATGGACTCTCCCCGCACCGCGTTTCTTCTATAAGACACGAGGT
IRR : tacagccATGGACTCTCCCCACAAGCAGTGAGGAAAGCTTTTTCGATCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAATTCG | TTC | 0 |
DNA sequence
ATGGACTCTCCCCGCACCGCGTTTCTTCTATAAGACACGAGGTGTCTGTTTGCCGGGAGAGTGAAGATGAAACGCATTGCAATTGATTTGGCCAAGTCCG
TTTACCAGGTTGCCGAAAGTATCCATGTCGGTCGGGTGGATCGTCGCAGGCGGCTCGATCCGGAGGCGTTCTGGCGTTATGTACAGGAGCAGCCGGCGCC
TGTCGAGTGGTTGATGGAAGCCTGTGGCACGGCCCACCACTGGGGGCGCCTGATGCAGGCGGCGGGGCATCGCGTGGTGCTGCTGCATCCGCGCTACGTG
CGTGCCTACCGGCGGCGCAACAAGACCGACCGCAACGACTGCGATGCGATCCTGGAGGCGGCTCGTTGCGAGGGTATCCGTCCGGTGCCGGTCAAAAGCG
TGCAGCAGCAACAGGTGCAGCAGCTGCACAAAATGCGCGAGGCCTGGAAGAAGACCCGGGTCCAGCGCATCAACCTGTTGCGCGGCATCCTGCGCGAGAT
GGGCGTGGCTGCACCCAATGGCACCCAGGCGTTCCTGCGCCAGGCCTGCGAGCTGATCGAGCGTCCGGAAGTCTGCGCCTTGCGCGGCGCGCTGCAGGTA
CTGCTGGCCGAGATCAGTCTCTACGAACAGTCGATGCGTGAGTGCGAAGACCAACTGGCGCGCTGGCATGCCGACGACGACATCGTGCACAAGCTCGATG
AAGTCAGCGGCATCGGCCTGCTCACCGCCAGCGCCCTGAAAACCGCTGTGGGCAAACCCGAGCGCTTTGCCAGCGGCCGGCACCTGAGCGCCTGGCTGGG
CATGACACCCAACGAATACAGCAGCGGCGAGCGCCGCAAGCTCGGCCGCATCAGTTGCAAGGGCAACACCTACGTGCGCACCCTGCTGATCCACGGCGCC
CGCGCGGCGTTGCTGGCCGCCAAGCGCTGCCAGGCACGTACGCCGCAACGCCTGACCCAGCTGCAGCGCTGGGCCCTGCAGACGGCTGAACGCATTGGCC
ACAACAAGGCTGCCGTGGCCCTGGCGAACAAACTGGTGAGGATCTGCTGGGCGGTGTGGTGCCACGAACGTCGCTTCAGTGGCGACTGGCAGAGTGCAAG
GCCCGCCTGACGGCGGGGTAATCAGGAAGACGCGTTATTTCTTGCGGTTGTGGTGAGAAGCGAGACTGTCGGAACAGGCGAGTCCTGCAGTGGAACAAGG
CCGATAACAATCATGATCTTCAGGATCGATTGAACGCTTGGCCCCCGCTGCGCGAACTACAGAATGGCCAGGGCACTGCCCACGACAAGGCCGGATATAC
GAATGCAACCGCGCTGACGACAGGATCGAAAAAGCTTTCCTCACTGCTTGTGGGGAGAGTCCAT
TTTACCAGGTTGCCGAAAGTATCCATGTCGGTCGGGTGGATCGTCGCAGGCGGCTCGATCCGGAGGCGTTCTGGCGTTATGTACAGGAGCAGCCGGCGCC
TGTCGAGTGGTTGATGGAAGCCTGTGGCACGGCCCACCACTGGGGGCGCCTGATGCAGGCGGCGGGGCATCGCGTGGTGCTGCTGCATCCGCGCTACGTG
CGTGCCTACCGGCGGCGCAACAAGACCGACCGCAACGACTGCGATGCGATCCTGGAGGCGGCTCGTTGCGAGGGTATCCGTCCGGTGCCGGTCAAAAGCG
TGCAGCAGCAACAGGTGCAGCAGCTGCACAAAATGCGCGAGGCCTGGAAGAAGACCCGGGTCCAGCGCATCAACCTGTTGCGCGGCATCCTGCGCGAGAT
GGGCGTGGCTGCACCCAATGGCACCCAGGCGTTCCTGCGCCAGGCCTGCGAGCTGATCGAGCGTCCGGAAGTCTGCGCCTTGCGCGGCGCGCTGCAGGTA
CTGCTGGCCGAGATCAGTCTCTACGAACAGTCGATGCGTGAGTGCGAAGACCAACTGGCGCGCTGGCATGCCGACGACGACATCGTGCACAAGCTCGATG
AAGTCAGCGGCATCGGCCTGCTCACCGCCAGCGCCCTGAAAACCGCTGTGGGCAAACCCGAGCGCTTTGCCAGCGGCCGGCACCTGAGCGCCTGGCTGGG
CATGACACCCAACGAATACAGCAGCGGCGAGCGCCGCAAGCTCGGCCGCATCAGTTGCAAGGGCAACACCTACGTGCGCACCCTGCTGATCCACGGCGCC
CGCGCGGCGTTGCTGGCCGCCAAGCGCTGCCAGGCACGTACGCCGCAACGCCTGACCCAGCTGCAGCGCTGGGCCCTGCAGACGGCTGAACGCATTGGCC
ACAACAAGGCTGCCGTGGCCCTGGCGAACAAACTGGTGAGGATCTGCTGGGCGGTGTGGTGCCACGAACGTCGCTTCAGTGGCGACTGGCAGAGTGCAAG
GCCCGCCTGACGGCGGGGTAATCAGGAAGACGCGTTATTTCTTGCGGTTGTGGTGAGAAGCGAGACTGTCGGAACAGGCGAGTCCTGCAGTGGAACAAGG
CCGATAACAATCATGATCTTCAGGATCGATTGAACGCTTGGCCCCCGCTGCGCGAACTACAGAATGGCCAGGGCACTGCCCACGACAAGGCCGGATATAC
GAATGCAACCGCGCTGACGACAGGATCGAAAAAGCTTTCCTCACTGCTTGTGGGGAGAGTCCAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1044 bp | 347 aa | 67 | 1110 | + | No |
Chemistry : DEDD
ORF sequence :
MKRIAIDLAKSVYQVAESIHVGRVDRRRRLDPEAFWRYVQEQPAPVEWLMEACGTAHHWGRLMQAAGHRVVLLHPRYVRAYRRRNKTDRNDCDAILEAAR
CEGIRPVPVKSVQQQQVQQLHKMREAWKKTRVQRINLLRGILREMGVAAPNGTQAFLRQACELIERPEVCALRGALQVLLAEISLYEQSMRECEDQLARW
HADDDIVHKLDEVSGIGLLTASALKTAVGKPERFASGRHLSAWLGMTPNEYSSGERRKLGRISCKGNTYVRTLLIHGARAALLAAKRCQARTPQRLTQLQ
RWALQTAERIGHNKAAVALANKLVRICWAVWCHERRFSGDWQSARPA
CEGIRPVPVKSVQQQQVQQLHKMREAWKKTRVQRINLLRGILREMGVAAPNGTQAFLRQACELIERPEVCALRGALQVLLAEISLYEQSMRECEDQLARW
HADDDIVHKLDEVSGIGLLTASALKTAVGKPERFASGRHLSAWLGMTPNEYSSGERRKLGRISCKGNTYVRTLLIHGARAALLAAKRCQARTPQRLTQLQ
RWALQTAERIGHNKAAVALANKLVRICWAVWCHERRFSGDWQSARPA
Blast result :
Comments
There appear to be no DRs for this IS. However, the sequence of the site before and after insertion is known and there are 3 additional bp (TAT) flanking IRL and 7 bp (TACAGCC) flanking IRR.This is typical of members of the IS1111 family.
ISPa21 is 57% aa similar to ISBcen3.
ISPa21 is 57% aa similar to ISBcen3.
References
1] L. Poirel (2004) Direct submission.