ISBmu3
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB159775 | Y | Burkholderia multivorans | Burkholderia multivorans ATCC17616 |
DNA section
IS Length : 2697 bp
Ends
IR Length : 40/49
IRL : TGCGTATTTCGGCGAGCGTGATCAGCGATTTCGGTTGAACGTGATCAGTG
IRR : TGCGGATTTCGGTGATGGTGATCAGGCGTTTCGGCGAACGTGATCAGTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | TTTGCGAA | NNNNNNNNNN | 8 |
NNNNNNNNNN | GATTGCA | NNNNNNNNNN | 7 |
DNA sequence
TGCGTATTTCGGCGAGCGTGATCAGCGATTTCGGTTGAACGTGATCAGTGGTTCCGATTGATGGTGATCGGTCGTTTCGGTCGAAGGTGATCACTTATCA
CCGGTTTCCGAAACGAGCGATCATCTTGCCGAAGCGGGTGATCACGTTCCCGGAATGAGTGATCAGCGAACCGAAACAGCTGATCACGCGACCGAAACGG
GATAGCCGTTCCGGCTCGGCGGTGGTGTTGCGCATGTGATCAACGACGGGCGTTAGCCTTGATCCTTTTTAGGGGACAGGTTGATGCCGGCACATCGGAT
GAGCATGCGCAAACTGAAGGAAGTACTGCGGCTGAAGTGGGCGTGCGGCCTGTCGCACCGCCAGATCAGCCGCGCGATCGGCATCAGCGTCGGCGCCATC
TCGGCATACGCCGCCCGCGCGAGCGCGGCGGGCCTCGACTGGGCTACCGTCGAACCGCTCGCCGACGACGAGCTCGAGATCAGGTTGGACCTGCCGGAGG
AAACCGCGGTCCCGACCCGCCGGGTCGAACCGGATTACGCGGCGATGCACCGCGACCTGCGCCGCAAGGGCGTGACGCTGCAACTGCTCTGGGAGGAGTA
CGTCGAGGCTCACCCAGGCCAACGCACCTATCGCTATACGCAGTTCTGCCAGCGGTACAAGGACTGGGCTGCGGCGCTGAAGCGCTCGATGCGCCAGCAA
CACCGCGCCGGCGAGAAGCTGTTCGCCGACTTCGCCGGGCAAACTGTGCCGATCCTCGGTCGCGACGGCGGCATCGCGTTCAAGGCTCACGTGTTCGTGG
CCGTCCTCGGCGCCTCGAACTACACCTATGCATGTGCGACGCGTTCGGAGGCCATGCCCGACTGGATCGGCAGCCTGATCGACGCGTTGGAATTCTACGG
CGGTGTCCCCGAGCTGCTGGTGCCCGACAACCCCAAGGCATTGATCGCCAAGGCGGACCGGTACGAACCGGTGCTGGGCAACACCACGCAGGACTTCGTG
AACCACTACGCGACCGCCATGTTGCCGGCGCGGCCGCGCAAGCCGCAGGACAAGGCGAAGGTCGAGGTCGGCGTGCAGATCGTCGAGCGCTGGATCCTCG
CACGGCTGCGCAACCACCGCTTCTACAGCCTGGCCGAGCTGAACAAGGCGATCGGCAAGCTGATCACCGACCTGAACCGGCGTCCGTTCAAGAAGCTCGA
CGGCAACCGCCGCGAATGGTTCGAGCGGCTAGACCGCCCGGCGCTGCGCCCGTTGCCGACACGCCGATACGAGATCGCGACCTTCGTGAAGTGCCGCGTC
AACATCGACTACCACGTCGAAGTCGATCACCACTATTACAGCGTCCCGCACAGCCTCGTGCGCCAGGAAGTCTATGCCCGCGTGACGCGCCACGGCGTCG
AGATCTTGCACCGCGGCAAGCGCGTTGCCGCCCACGCCCGCAGCCGACTCCGGAACAAGCATACGACGTTGCCTGAGCATATGCCGGCGGCGCACCGCGC
CCACATGGAATGGACGCCAGGCCGGTTGTTGAACTGGGGCGCCTCGGTCGGTCCCGGTGCCGAGGCGATCGTCAAACATCTGTTGACCAACCGGCCCCAT
CCCGAGATGGGGTACCGTGCCTGTCTCGGACTGCTGTCGCTCTCGCGCAAGTACGGCAAGGAACGGCTGGAAGCCGCCTGCCAGCGGGCGCTCGTGATCG
GCTCACCGACCCGCCGCTCCGTGCTGTCGATCCTCGAATCCGGCCTGGACCGACAGCCGATGCTCCCGATTCCGCCCGCCGAATGGCATTCGCCCGATCA
CGAGAACGTGCGCGGGCCCGAGTATTACCACTGACCCAAGGAGGTCGCAATGTTGATGCAGCAAACCTTAACCCAGCTCAAGTCCCTGAAGCTCGACGGC
ATGGCCCGCGCGTTCGAGGAACAAACGGCGTTGACCGCCAGCACCAGCCTGTCGTTCGAAGAGCGCTTCGGCATGGTCGTCGAGCGCGAGCTCGCCTGGC
GCGATACCCGGCGGCTCGAACGGCTGCTGAAGTCTGCGAAACTCAAGAATCCCCAGGCCTGCATTGAGGACATCGAATACCGGCAGAGCCGCGGCATCGA
CAAGAGCGTCGTCGCCGCACTTGCCGGTTGCGACTGGATCCGTAACGCGCAGAACCTCATCCTGACGGGGCCGACCGGCGCAGGCAAGACGTGGATTGCG
TGCGCGTTCGGTCAGCAGGCCTGCCGACAAGGCTTCTCCGTGATGTACGTCCGCGTTGCCCGGCTGTTCGAGGAATTGAAGATCGCTCACGGCGACGGCA
GCTTCACGCGGCGGCTCGCGCAGCTCGCCAAGATGGACGTCCTGCTGCTCGACGACTGGGGGCTGCAGGATCTCGATCAGGGTGCCCGAAACGATCTGCT
CGAAGTGCTCGACGATCGCGTTGGCACGCGCTCCACGATCATTACCAGCCAACTGCCATTGGAACACTGGCACGCTTGGCTTCAGGACCCGACGCTCGCC
GACGCGATCCTCGACCGGCTCGTCCATCAGGCCCACAAGCTGCCGTTGAAGGGCGAGTCGATGCGAAAGACCAACGCCAAGCAGTCCTCCGCATCCTGAT
CGTGATCACCTTCGCTATAATCCATTGACCGCGCAACACCACCTTCCAAACTGATCACGTTCGCCGAAACGCCTGATCACCATCACCGAAATCCGCA
CCGGTTTCCGAAACGAGCGATCATCTTGCCGAAGCGGGTGATCACGTTCCCGGAATGAGTGATCAGCGAACCGAAACAGCTGATCACGCGACCGAAACGG
GATAGCCGTTCCGGCTCGGCGGTGGTGTTGCGCATGTGATCAACGACGGGCGTTAGCCTTGATCCTTTTTAGGGGACAGGTTGATGCCGGCACATCGGAT
GAGCATGCGCAAACTGAAGGAAGTACTGCGGCTGAAGTGGGCGTGCGGCCTGTCGCACCGCCAGATCAGCCGCGCGATCGGCATCAGCGTCGGCGCCATC
TCGGCATACGCCGCCCGCGCGAGCGCGGCGGGCCTCGACTGGGCTACCGTCGAACCGCTCGCCGACGACGAGCTCGAGATCAGGTTGGACCTGCCGGAGG
AAACCGCGGTCCCGACCCGCCGGGTCGAACCGGATTACGCGGCGATGCACCGCGACCTGCGCCGCAAGGGCGTGACGCTGCAACTGCTCTGGGAGGAGTA
CGTCGAGGCTCACCCAGGCCAACGCACCTATCGCTATACGCAGTTCTGCCAGCGGTACAAGGACTGGGCTGCGGCGCTGAAGCGCTCGATGCGCCAGCAA
CACCGCGCCGGCGAGAAGCTGTTCGCCGACTTCGCCGGGCAAACTGTGCCGATCCTCGGTCGCGACGGCGGCATCGCGTTCAAGGCTCACGTGTTCGTGG
CCGTCCTCGGCGCCTCGAACTACACCTATGCATGTGCGACGCGTTCGGAGGCCATGCCCGACTGGATCGGCAGCCTGATCGACGCGTTGGAATTCTACGG
CGGTGTCCCCGAGCTGCTGGTGCCCGACAACCCCAAGGCATTGATCGCCAAGGCGGACCGGTACGAACCGGTGCTGGGCAACACCACGCAGGACTTCGTG
AACCACTACGCGACCGCCATGTTGCCGGCGCGGCCGCGCAAGCCGCAGGACAAGGCGAAGGTCGAGGTCGGCGTGCAGATCGTCGAGCGCTGGATCCTCG
CACGGCTGCGCAACCACCGCTTCTACAGCCTGGCCGAGCTGAACAAGGCGATCGGCAAGCTGATCACCGACCTGAACCGGCGTCCGTTCAAGAAGCTCGA
CGGCAACCGCCGCGAATGGTTCGAGCGGCTAGACCGCCCGGCGCTGCGCCCGTTGCCGACACGCCGATACGAGATCGCGACCTTCGTGAAGTGCCGCGTC
AACATCGACTACCACGTCGAAGTCGATCACCACTATTACAGCGTCCCGCACAGCCTCGTGCGCCAGGAAGTCTATGCCCGCGTGACGCGCCACGGCGTCG
AGATCTTGCACCGCGGCAAGCGCGTTGCCGCCCACGCCCGCAGCCGACTCCGGAACAAGCATACGACGTTGCCTGAGCATATGCCGGCGGCGCACCGCGC
CCACATGGAATGGACGCCAGGCCGGTTGTTGAACTGGGGCGCCTCGGTCGGTCCCGGTGCCGAGGCGATCGTCAAACATCTGTTGACCAACCGGCCCCAT
CCCGAGATGGGGTACCGTGCCTGTCTCGGACTGCTGTCGCTCTCGCGCAAGTACGGCAAGGAACGGCTGGAAGCCGCCTGCCAGCGGGCGCTCGTGATCG
GCTCACCGACCCGCCGCTCCGTGCTGTCGATCCTCGAATCCGGCCTGGACCGACAGCCGATGCTCCCGATTCCGCCCGCCGAATGGCATTCGCCCGATCA
CGAGAACGTGCGCGGGCCCGAGTATTACCACTGACCCAAGGAGGTCGCAATGTTGATGCAGCAAACCTTAACCCAGCTCAAGTCCCTGAAGCTCGACGGC
ATGGCCCGCGCGTTCGAGGAACAAACGGCGTTGACCGCCAGCACCAGCCTGTCGTTCGAAGAGCGCTTCGGCATGGTCGTCGAGCGCGAGCTCGCCTGGC
GCGATACCCGGCGGCTCGAACGGCTGCTGAAGTCTGCGAAACTCAAGAATCCCCAGGCCTGCATTGAGGACATCGAATACCGGCAGAGCCGCGGCATCGA
CAAGAGCGTCGTCGCCGCACTTGCCGGTTGCGACTGGATCCGTAACGCGCAGAACCTCATCCTGACGGGGCCGACCGGCGCAGGCAAGACGTGGATTGCG
TGCGCGTTCGGTCAGCAGGCCTGCCGACAAGGCTTCTCCGTGATGTACGTCCGCGTTGCCCGGCTGTTCGAGGAATTGAAGATCGCTCACGGCGACGGCA
GCTTCACGCGGCGGCTCGCGCAGCTCGCCAAGATGGACGTCCTGCTGCTCGACGACTGGGGGCTGCAGGATCTCGATCAGGGTGCCCGAAACGATCTGCT
CGAAGTGCTCGACGATCGCGTTGGCACGCGCTCCACGATCATTACCAGCCAACTGCCATTGGAACACTGGCACGCTTGGCTTCAGGACCCGACGCTCGCC
GACGCGATCCTCGACCGGCTCGTCCATCAGGCCCACAAGCTGCCGTTGAAGGGCGAGTCGATGCGAAAGACCAACGCCAAGCAGTCCTCCGCATCCTGAT
CGTGATCACCTTCGCTATAATCCATTGACCGCGCAACACCACCTTCCAAACTGATCACGTTCGCCGAAACGCCTGATCACCATCACCGAAATCCGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1551 bp | 516 aa | 284 | 1834 | + | No |
Chemistry : DDE
ORF sequence :
MPAHRMSMRKLKEVLRLKWACGLSHRQISRAIGISVGAISAYAARASAAGLDWATVEPLADDELEIRLDLPEETAVPTRRVEPDYAAMHRDLRRKGVTLQ
LLWEEYVEAHPGQRTYRYTQFCQRYKDWAAALKRSMRQQHRAGEKLFADFAGQTVPILGRDGGIAFKAHVFVAVLGASNYTYACATRSEAMPDWIGSLID
ALEFYGGVPELLVPDNPKALIAKADRYEPVLGNTTQDFVNHYATAMLPARPRKPQDKAKVEVGVQIVERWILARLRNHRFYSLAELNKAIGKLITDLNRR
PFKKLDGNRREWFERLDRPALRPLPTRRYEIATFVKCRVNIDYHVEVDHHYYSVPHSLVRQEVYARVTRHGVEILHRGKRVAAHARSRLRNKHTTLPEHM
PAAHRAHMEWTPGRLLNWGASVGPGAEAIVKHLLTNRPHPEMGYRACLGLLSLSRKYGKERLEAACQRALVIGSPTRRSVLSILESGLDRQPMLPIPPAE
WHSPDHENVRGPEYYH
LLWEEYVEAHPGQRTYRYTQFCQRYKDWAAALKRSMRQQHRAGEKLFADFAGQTVPILGRDGGIAFKAHVFVAVLGASNYTYACATRSEAMPDWIGSLID
ALEFYGGVPELLVPDNPKALIAKADRYEPVLGNTTQDFVNHYATAMLPARPRKPQDKAKVEVGVQIVERWILARLRNHRFYSLAELNKAIGKLITDLNRR
PFKKLDGNRREWFERLDRPALRPLPTRRYEIATFVKCRVNIDYHVEVDHHYYSVPHSLVRQEVYARVTRHGVEILHRGKRVAAHARSRLRNKHTTLPEHM
PAAHRAHMEWTPGRLLNWGASVGPGAEAIVKHLLTNRPHPEMGYRACLGLLSLSRKYGKERLEAACQRALVIGSPTRRSVLSILESGLDRQPMLPIPPAE
WHSPDHENVRGPEYYH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
750 bp | 249 aa | 1850 | 2599 | + | No |
AG : IS21 helper
ORF sequence :
MLMQQTLTQLKSLKLDGMARAFEEQTALTASTSLSFEERFGMVVERELAWRDTRRLERLLKSAKLKNPQACIEDIEYRQSRGIDKSVVAALAGCDWIRNA
QNLILTGPTGAGKTWIACAFGQQACRQGFSVMYVRVARLFEELKIAHGDGSFTRRLAQLAKMDVLLLDDWGLQDLDQGARNDLLEVLDDRVGTRSTIITS
QLPLEHWHAWLQDPTLADAILDRLVHQAHKLPLKGESMRKTNAKQSSAS
QNLILTGPTGAGKTWIACAFGQQACRQGFSVMYVRVARLFEELKIAHGDGSFTRRLAQLAKMDVLLLDDWGLQDLDQGARNDLLEVLDDRVGTRSTIITS
QLPLEHWHAWLQDPTLADAILDRLVHQAHKLPLKGESMRKTNAKQSSAS
Blast result :
Comments
ISBmu3 is 90% (orf1)and 96% (ORF2) aa similar to IS408.
References
1] Yoshiyuki Ohtsubo, Hiroyuki Genka, Harunobu Komatsu, Yuji Nagata, and Masataka Tsuda,
Applied and Environmental Microbiology, in preparation.
High-Temperature-Induced Transposition of IS Elements in Burkholderia multivorans ATCC 17616
Applied and Environmental Microbiology, in preparation.
High-Temperature-Induced Transposition of IS Elements in Burkholderia multivorans ATCC 17616