ISBmu2

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB159774 Y Burkholderia multivorans
Burkholderia multivorans ATCC17616
DNA section
IS Length : 1210 bp

Ends


IR Length : 14/16

IRL : GGAAACGCTGATTTATTCGGCTCGGCGGTCATCGCAGACGTAGCCGAGGA
IRR : GGAAACGCTGATCAATGGACCAACTTCCGAAGTTGCAGGCGAGATGGCTT

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNCTAANNNNNNNNNN4
NNNNNNNNNNTTAGNNNNNNNNNN4
NNNNNNNNNNCTATNNNNNNNNNN4

DNA sequence

GGAAACGCTGATTTATTCGGCTCGGCGGTCATCGCAGACGTAGCCGAGGACGTTTAGAAGACAGCTCACGGAACGGACCCACGACGATGAAGAGGCAGAT
CGGCTTCGCGGAAGCGGAAATTGCAGGCAAGAAGCGAGTGACGAGGCGCCAACGCTTCCTGGAAGAGATGGAGAAGGTCGTTCCGTGGCAGCGCTTGCTG
TCGGCCATCGAACCGCACTATCCGAAGGGCACGCGAGGTCGCCCGCCGATTGGCCTTGAGCGGATGCTGCGAATCTACTTCGTGCAACAGTGGTACGGAC
TGTCGGACGAAGGACTGGAAGACGCGCTGTATGACAGCATCACGCTGCGAGCCTTCGCCGGCATCGATCTGGCGATCGAGAACGTGCCTGATGCAACCAC
GCTGTTGAAGTTCCGGCGCCTGCTGATCGAACACGAACTGACACGGAAGTTGTTCGACGAGATTGGCATCTCGCTGTGCGAGCGCGGGCTGATGATGAAG
GAAGGCACGCTGGTTGACGCGACGATCATTGAAGCGCCGCCGTCGACCAAGAATGCCGGGAAGAGCCGTGACCCGGAAATGCATCAAACGAAGAAGGGCA
ACGAATGGCACTTTGGCATGAAAGCCCACATTGGCGTCGACGCCGACTCGGGCCTGATTCACAGTGTGGTTGGCACGGCGGCCAACGTGTCGGATGTATC
GCAAGCTCATGCCCTGCTGCACGGGCATGAAGAGCAGGTGTTCGCCGACGCGGGCTACATTGGCGTCGACAAGCGCGAGGAAATGGCGGGCAAGGCCGTG
AAGTGGCACGTCGCTGCCAGGCGGGGAAAGATCAAGGCGATGCAAGAAGGAGCGCTGAAGGACCTGGTGATCGCGCTCGAGCGAACCAAGGCGCAGATCC
GTTCGCGGGTTGAGCATCCGTTTCATATCGTCAAGAATCTGTTTCAGCATCGCAAGACCCGATACAAGGGCTTGGCCAAGAACACCGCGCAACTGTTCAG
CCTGTTCGCTCTGGCGAATCTGGTGATTGCGCGAAATCTGTTGCGATCGGTCCATGGGAGCAGTCCGTCATGCGTATGAAAAATGCGAGCAGGGGAGGCT
CGCTTACGCGCCAAATTCACTGAATTGAGCGCCGATTCGCTTCGTCATCCAGAAAATTTGAAGCCATCTCGCCTGCAACTTCGGAAGTTGGTCCATTGAT
CAGCGTTTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
993 bp330 aa871079+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRQIGFAEAEIAGKKRVTRRQRFLEEMEKVVPWQRLLSAIEPHYPKGTRGRPPIGLERMLRIYFVQQWYGLSDEGLEDALYDSITLRAFAGIDLAIENV
PDATTLLKFRRLLIEHELTRKLFDEIGISLCERGLMMKEGTLVDATIIEAPPSTKNAGKSRDPEMHQTKKGNEWHFGMKAHIGVDADSGLIHSVVGTAAN
VSDVSQAHALLHGHEEQVFADAGYIGVDKREEMAGKAVKWHVAARRGKIKAMQEGALKDLVIALERTKAQIRSRVEHPFHIVKNLFQHRKTRYKGLAKNT
AQLFSLFALANLVIARNLLRSVHGSSPSCV

 

Blast result :
Comments
ISBmu2 is 89% aa similar to IS1021.
References
1] Yoshiyuki Ohtsubo, Hiroyuki Genka, Harunobu Komatsu, Yuji Nagata, and Masataka Tsuda,
Applied and Environmental Microbiology, in preparation.
High-Temperature-Induced Transposition of IS Elements in Burkholderia multivorans ATCC 17616