ISBmu1

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB159773 Y Burkholderia multivorans
Burkholderia multivorans ATCC17616
DNA section
IS Length : 2581 bp

Ends


IR Length : 39/51

IRL : TGTCACGGGGCGGCGCTATGGAGCCAATGCGGGGTCGGCATAAGGGCGCC
IRR : TGTCGCGGGGCGGCGTAAAGGAGCCGGGGATGGGCGGCGTAATGGCGCCA

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNCAGGANNNNNNNNNN5

DNA sequence

TGTCACGGGGCGGCGCTATGGAGCCAATGCGGGGTCGGCATAAGGGCGCCACTTGAGGGGCGGCACATAGGCGCCAGTCCAAGGGCGGCGTAATGGCGCC
ACGTTAGGGGCGGCGCATAGGCGCCAGCAGCATCAGGGCGAGAACGCGGTTCGAACTTTCCGAGTCGGTACGCTCCGTTCTTTTTGAACGGAGCGTCCAT
GGCCAACAGGAGGTTCGAATTGTTTGAATACCGCCAAGTCCTTGTCCGCATGCCGGCAAGGCGATTCTGACCGCGACATCGCGCGCGGCGGTTTGATGGG
GCGCAAGAAGCTGACGACCGGATCCGGTGCAGCCGCTTCCGGAACGACGCTACGATCGCGGGTGTCTTCGGGCGCACGCCGCACCTGCCGCACACCTGTG
TGTCGACGGTTGAGCCATATCGCGAACAGGTCCGCGAATGGCTTGCCGCCGGCGTTCAGGGCACCACGATCCATGCCGCCCTTCAACGCAATCATGGCTA
CGCCGGCAGCTATTGTGCCGTGAAGCGCATGCTGCGCCATCTGGCTGCCGAGCGCAGCGTGGCCACCACAACGAATCCTCGAACTTCGCACCGGCCGACG
CCGCGCAGGTCGACTTCGGCGCGGGACCCGTGCTGACGGTCGAGGGCATTGCGGTCCGGACGTGGATCTTCGTGATGACGTTGTGCTGGTCGCGCCACCA
GTATGCCGAGATCGTGCTGGACCAGACCGTCGAGACGTGGCTCGCCAGCCACCGGCGCGCCTTCGAATGGTTCGGCGGCTGTCCCGACCGGGTCATCATC
GATAACGCGAAGTGCGCGATCATCCGGGCGTGTCGATACGAGCCGGCGGTGCAACGCTCGTACGCCGCGCTTGCCGAGGGATATGGATTCCGGATCGACG
CCTGTCCGCCGCACGATCCCCAGAAGAAGGGCGTCGTCGAATCGGGCGTCAAATACGTCAAGAAGTCCTTCGTGCCGCTGCGCGAGTTCCGGGATCTGGC
CGACGCCAACCGGCAACTGCGCGAATGGGTGATGCAGCAGGCCGGCACTCGTATCCACGGCACCGTCCACGAACGGCCGCTGACGCGCTTCGGCGTCGAG
CGCCCGTTGCTCGCTGCATTGCCGGACGTGCCGCCGGTACTGTCGGTCTGGAACGAGGTGGCGGTCCATCGCGACGGCCACGTCGTCTACAAGCACGCGC
TGTACTCTGCACCGTTCACGCTCGTCGGCAAGTCGCTCTGGCTGAAGGCGACCGATACGGTCATCCAGCTGTTCCATCGGCATGAACTCGTCGCAACCCA
TCCGCGGCAGCGGGCCGGCGGTCGCCACACGGTGCGAGATCACCAGCCGCCCGAAGCGCAGGCCTGGCTCGAGCACGATCCGCAGTGGTGTCTGGCGCGC
GCGAAGGAGATCGGGCCGTCGTGCCACGGCGTGATCCTCGCGCTGTTCAACGACAAGGTGCTCGTCAACCTGCGCGGCGCGCAGGGGATCATCCGGCTGC
GACAGAAAGTCGGCGATCAGAGGCTGGAAGCAGCCTGCGAGCGTGCGCTCGCGTTCAGCAGCGCGAAGTACAGCACCATCAAGGGCATCCTCGACAAAGG
CCTGGACAGCGAACCGGTGCCGCGTCCCGCGTCGGCCCCGACTGGCGCTTACCAGAACGGCGGCCGCTTCGGCCGTGATCTCCAATCCCTGCTGATCCAC
TGACACCATGAACCCGAGTCCCGAATTGAATTCCATCCTCAAACAGCTGCGCCTGTCCGGCATCCTCGACTCGCTTGAGCAGCGCAACCGTCAGGCGATC
GACGGGCAGCTCGCCTATACCGAGTTCCTTGCCATGCTGCTGCACGACGAGGTTGCCCGTCGCGAACACAAGAAGCTCGGCACCCGTCTGCTGCGCGCCG
GCTTCGCGATGGGCAAGACGCTCGAGACGTTCGACTTCGACCGGCTGCCTACGTTGAACCGCTCACACGTTCATGATCTCGCGACAGGCCGGTATCTCGA
CGAGAAGGTCGCGATCCTGATCGCCGGTCCAACCGGCACCGGCAAAAGCCACTTGGCCCAGGCGCTGGGCCACTGCGCCGCCCGCCAAGGCCGCGATGTG
CTGTTCATCTCGCAGACCGAGCTGCTCAAGCGATTGAACGCCGCGCGCGCCACCGGCGCCTATGACCGCAAGTTCCAGCAGTACGCCCGGGTGCCGCTGC
TGATCGTCGATGACTTCGCGCTCAAACCGCTACGTACCCCGCAGGACGAGGACTTCCACGATCTCGTCGCGGCCCGCTACGAGCACGCGGCGACCATCCT
GACGTCGAATCTCGACTTCGGTGAATGGGGCGCCGCGTTCCCCGACAACCGCATCCTCGGCACCGCCACACTCGACCGACTACGCCACGGCGCCTACCGG
CTCGTCCTCGAGGGCGACAGTTACCGCACCCCGAAACCGATGCCAGATCCCCCTCAAAATGCAGTTGCCAAAAACGGCAAAAAACCGCAACCTTGAAACC
GTTCGAATCCGCGTTTTACCCCCGGTTCTGCTGGCGCCATTACGCCGCCCATCCCCGGCTCCTTTACGCCGCCCCGCGACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1266 bp421 aa4381703+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MACRRRSGHHDPCRPSTQSWLRRQLLCREAHAAPSGCRAQRGHHNESSNFAPADAAQVDFGAGPVLTVEGIAVRTWIFVMTLCWSRHQYAEIVLDQTVET
WLASHRRAFEWFGGCPDRVIIDNAKCAIIRACRYEPAVQRSYAALAEGYGFRIDACPPHDPQKKGVVESGVKYVKKSFVPLREFRDLADANRQLREWVMQ
QAGTRIHGTVHERPLTRFGVERPLLAALPDVPPVLSVWNEVAVHRDGHVVYKHALYSAPFTLVGKSLWLKATDTVIQLFHRHELVATHPRQRAGGRHTVR
DHQPPEAQAWLEHDPQWCLARAKEIGPSCHGVILALFNDKVLVNLRGAQGIIRLRQKVGDQRLEAACERALAFSSAKYSTIKGILDKGLDSEPVPRPASA
PTGAYQNGGRFGRDLQSLLIH

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
789 bp262 aa17082496+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MNPSPELNSILKQLRLSGILDSLEQRNRQAIDGQLAYTEFLAMLLHDEVARREHKKLGTRLLRAGFAMGKTLETFDFDRLPTLNRSHVHDLATGRYLDEK
VAILIAGPTGTGKSHLAQALGHCAARQGRDVLFISQTELLKRLNAARATGAYDRKFQQYARVPLLIVDDFALKPLRTPQDEDFHDLVAARYEHAATILTS
NLDFGEWGAAFPDNRILGTATLDRLRHGAYRLVLEGDSYRTPKPMPDPPQNAVAKNGKKPQP

 

Blast result :
Comments
ISBmu1 is 50%(ORF1) and 57% (ORF2) aa similar to ISMt2.
References
1] Yoshiyuki Ohtsubo, Hiroyuki Genka, Harunobu Komatsu, Yuji Nagata, and Masataka Tsuda,
Applied and Environmental Microbiology, in preparation.
High-Temperature-Induced Transposition of IS Elements in Burkholderia multivorans ATCC 17616