ISBmu1
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB159773 | Y | Burkholderia multivorans | Burkholderia multivorans ATCC17616 |
DNA section
IS Length : 2581 bp
Ends
IR Length : 39/51
IRL : TGTCACGGGGCGGCGCTATGGAGCCAATGCGGGGTCGGCATAAGGGCGCC
IRR : TGTCGCGGGGCGGCGTAAAGGAGCCGGGGATGGGCGGCGTAATGGCGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | CAGGA | NNNNNNNNNN | 5 |
DNA sequence
TGTCACGGGGCGGCGCTATGGAGCCAATGCGGGGTCGGCATAAGGGCGCCACTTGAGGGGCGGCACATAGGCGCCAGTCCAAGGGCGGCGTAATGGCGCC
ACGTTAGGGGCGGCGCATAGGCGCCAGCAGCATCAGGGCGAGAACGCGGTTCGAACTTTCCGAGTCGGTACGCTCCGTTCTTTTTGAACGGAGCGTCCAT
GGCCAACAGGAGGTTCGAATTGTTTGAATACCGCCAAGTCCTTGTCCGCATGCCGGCAAGGCGATTCTGACCGCGACATCGCGCGCGGCGGTTTGATGGG
GCGCAAGAAGCTGACGACCGGATCCGGTGCAGCCGCTTCCGGAACGACGCTACGATCGCGGGTGTCTTCGGGCGCACGCCGCACCTGCCGCACACCTGTG
TGTCGACGGTTGAGCCATATCGCGAACAGGTCCGCGAATGGCTTGCCGCCGGCGTTCAGGGCACCACGATCCATGCCGCCCTTCAACGCAATCATGGCTA
CGCCGGCAGCTATTGTGCCGTGAAGCGCATGCTGCGCCATCTGGCTGCCGAGCGCAGCGTGGCCACCACAACGAATCCTCGAACTTCGCACCGGCCGACG
CCGCGCAGGTCGACTTCGGCGCGGGACCCGTGCTGACGGTCGAGGGCATTGCGGTCCGGACGTGGATCTTCGTGATGACGTTGTGCTGGTCGCGCCACCA
GTATGCCGAGATCGTGCTGGACCAGACCGTCGAGACGTGGCTCGCCAGCCACCGGCGCGCCTTCGAATGGTTCGGCGGCTGTCCCGACCGGGTCATCATC
GATAACGCGAAGTGCGCGATCATCCGGGCGTGTCGATACGAGCCGGCGGTGCAACGCTCGTACGCCGCGCTTGCCGAGGGATATGGATTCCGGATCGACG
CCTGTCCGCCGCACGATCCCCAGAAGAAGGGCGTCGTCGAATCGGGCGTCAAATACGTCAAGAAGTCCTTCGTGCCGCTGCGCGAGTTCCGGGATCTGGC
CGACGCCAACCGGCAACTGCGCGAATGGGTGATGCAGCAGGCCGGCACTCGTATCCACGGCACCGTCCACGAACGGCCGCTGACGCGCTTCGGCGTCGAG
CGCCCGTTGCTCGCTGCATTGCCGGACGTGCCGCCGGTACTGTCGGTCTGGAACGAGGTGGCGGTCCATCGCGACGGCCACGTCGTCTACAAGCACGCGC
TGTACTCTGCACCGTTCACGCTCGTCGGCAAGTCGCTCTGGCTGAAGGCGACCGATACGGTCATCCAGCTGTTCCATCGGCATGAACTCGTCGCAACCCA
TCCGCGGCAGCGGGCCGGCGGTCGCCACACGGTGCGAGATCACCAGCCGCCCGAAGCGCAGGCCTGGCTCGAGCACGATCCGCAGTGGTGTCTGGCGCGC
GCGAAGGAGATCGGGCCGTCGTGCCACGGCGTGATCCTCGCGCTGTTCAACGACAAGGTGCTCGTCAACCTGCGCGGCGCGCAGGGGATCATCCGGCTGC
GACAGAAAGTCGGCGATCAGAGGCTGGAAGCAGCCTGCGAGCGTGCGCTCGCGTTCAGCAGCGCGAAGTACAGCACCATCAAGGGCATCCTCGACAAAGG
CCTGGACAGCGAACCGGTGCCGCGTCCCGCGTCGGCCCCGACTGGCGCTTACCAGAACGGCGGCCGCTTCGGCCGTGATCTCCAATCCCTGCTGATCCAC
TGACACCATGAACCCGAGTCCCGAATTGAATTCCATCCTCAAACAGCTGCGCCTGTCCGGCATCCTCGACTCGCTTGAGCAGCGCAACCGTCAGGCGATC
GACGGGCAGCTCGCCTATACCGAGTTCCTTGCCATGCTGCTGCACGACGAGGTTGCCCGTCGCGAACACAAGAAGCTCGGCACCCGTCTGCTGCGCGCCG
GCTTCGCGATGGGCAAGACGCTCGAGACGTTCGACTTCGACCGGCTGCCTACGTTGAACCGCTCACACGTTCATGATCTCGCGACAGGCCGGTATCTCGA
CGAGAAGGTCGCGATCCTGATCGCCGGTCCAACCGGCACCGGCAAAAGCCACTTGGCCCAGGCGCTGGGCCACTGCGCCGCCCGCCAAGGCCGCGATGTG
CTGTTCATCTCGCAGACCGAGCTGCTCAAGCGATTGAACGCCGCGCGCGCCACCGGCGCCTATGACCGCAAGTTCCAGCAGTACGCCCGGGTGCCGCTGC
TGATCGTCGATGACTTCGCGCTCAAACCGCTACGTACCCCGCAGGACGAGGACTTCCACGATCTCGTCGCGGCCCGCTACGAGCACGCGGCGACCATCCT
GACGTCGAATCTCGACTTCGGTGAATGGGGCGCCGCGTTCCCCGACAACCGCATCCTCGGCACCGCCACACTCGACCGACTACGCCACGGCGCCTACCGG
CTCGTCCTCGAGGGCGACAGTTACCGCACCCCGAAACCGATGCCAGATCCCCCTCAAAATGCAGTTGCCAAAAACGGCAAAAAACCGCAACCTTGAAACC
GTTCGAATCCGCGTTTTACCCCCGGTTCTGCTGGCGCCATTACGCCGCCCATCCCCGGCTCCTTTACGCCGCCCCGCGACA
ACGTTAGGGGCGGCGCATAGGCGCCAGCAGCATCAGGGCGAGAACGCGGTTCGAACTTTCCGAGTCGGTACGCTCCGTTCTTTTTGAACGGAGCGTCCAT
GGCCAACAGGAGGTTCGAATTGTTTGAATACCGCCAAGTCCTTGTCCGCATGCCGGCAAGGCGATTCTGACCGCGACATCGCGCGCGGCGGTTTGATGGG
GCGCAAGAAGCTGACGACCGGATCCGGTGCAGCCGCTTCCGGAACGACGCTACGATCGCGGGTGTCTTCGGGCGCACGCCGCACCTGCCGCACACCTGTG
TGTCGACGGTTGAGCCATATCGCGAACAGGTCCGCGAATGGCTTGCCGCCGGCGTTCAGGGCACCACGATCCATGCCGCCCTTCAACGCAATCATGGCTA
CGCCGGCAGCTATTGTGCCGTGAAGCGCATGCTGCGCCATCTGGCTGCCGAGCGCAGCGTGGCCACCACAACGAATCCTCGAACTTCGCACCGGCCGACG
CCGCGCAGGTCGACTTCGGCGCGGGACCCGTGCTGACGGTCGAGGGCATTGCGGTCCGGACGTGGATCTTCGTGATGACGTTGTGCTGGTCGCGCCACCA
GTATGCCGAGATCGTGCTGGACCAGACCGTCGAGACGTGGCTCGCCAGCCACCGGCGCGCCTTCGAATGGTTCGGCGGCTGTCCCGACCGGGTCATCATC
GATAACGCGAAGTGCGCGATCATCCGGGCGTGTCGATACGAGCCGGCGGTGCAACGCTCGTACGCCGCGCTTGCCGAGGGATATGGATTCCGGATCGACG
CCTGTCCGCCGCACGATCCCCAGAAGAAGGGCGTCGTCGAATCGGGCGTCAAATACGTCAAGAAGTCCTTCGTGCCGCTGCGCGAGTTCCGGGATCTGGC
CGACGCCAACCGGCAACTGCGCGAATGGGTGATGCAGCAGGCCGGCACTCGTATCCACGGCACCGTCCACGAACGGCCGCTGACGCGCTTCGGCGTCGAG
CGCCCGTTGCTCGCTGCATTGCCGGACGTGCCGCCGGTACTGTCGGTCTGGAACGAGGTGGCGGTCCATCGCGACGGCCACGTCGTCTACAAGCACGCGC
TGTACTCTGCACCGTTCACGCTCGTCGGCAAGTCGCTCTGGCTGAAGGCGACCGATACGGTCATCCAGCTGTTCCATCGGCATGAACTCGTCGCAACCCA
TCCGCGGCAGCGGGCCGGCGGTCGCCACACGGTGCGAGATCACCAGCCGCCCGAAGCGCAGGCCTGGCTCGAGCACGATCCGCAGTGGTGTCTGGCGCGC
GCGAAGGAGATCGGGCCGTCGTGCCACGGCGTGATCCTCGCGCTGTTCAACGACAAGGTGCTCGTCAACCTGCGCGGCGCGCAGGGGATCATCCGGCTGC
GACAGAAAGTCGGCGATCAGAGGCTGGAAGCAGCCTGCGAGCGTGCGCTCGCGTTCAGCAGCGCGAAGTACAGCACCATCAAGGGCATCCTCGACAAAGG
CCTGGACAGCGAACCGGTGCCGCGTCCCGCGTCGGCCCCGACTGGCGCTTACCAGAACGGCGGCCGCTTCGGCCGTGATCTCCAATCCCTGCTGATCCAC
TGACACCATGAACCCGAGTCCCGAATTGAATTCCATCCTCAAACAGCTGCGCCTGTCCGGCATCCTCGACTCGCTTGAGCAGCGCAACCGTCAGGCGATC
GACGGGCAGCTCGCCTATACCGAGTTCCTTGCCATGCTGCTGCACGACGAGGTTGCCCGTCGCGAACACAAGAAGCTCGGCACCCGTCTGCTGCGCGCCG
GCTTCGCGATGGGCAAGACGCTCGAGACGTTCGACTTCGACCGGCTGCCTACGTTGAACCGCTCACACGTTCATGATCTCGCGACAGGCCGGTATCTCGA
CGAGAAGGTCGCGATCCTGATCGCCGGTCCAACCGGCACCGGCAAAAGCCACTTGGCCCAGGCGCTGGGCCACTGCGCCGCCCGCCAAGGCCGCGATGTG
CTGTTCATCTCGCAGACCGAGCTGCTCAAGCGATTGAACGCCGCGCGCGCCACCGGCGCCTATGACCGCAAGTTCCAGCAGTACGCCCGGGTGCCGCTGC
TGATCGTCGATGACTTCGCGCTCAAACCGCTACGTACCCCGCAGGACGAGGACTTCCACGATCTCGTCGCGGCCCGCTACGAGCACGCGGCGACCATCCT
GACGTCGAATCTCGACTTCGGTGAATGGGGCGCCGCGTTCCCCGACAACCGCATCCTCGGCACCGCCACACTCGACCGACTACGCCACGGCGCCTACCGG
CTCGTCCTCGAGGGCGACAGTTACCGCACCCCGAAACCGATGCCAGATCCCCCTCAAAATGCAGTTGCCAAAAACGGCAAAAAACCGCAACCTTGAAACC
GTTCGAATCCGCGTTTTACCCCCGGTTCTGCTGGCGCCATTACGCCGCCCATCCCCGGCTCCTTTACGCCGCCCCGCGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1266 bp | 421 aa | 438 | 1703 | + | No |
Chemistry : DDE
ORF sequence :
MACRRRSGHHDPCRPSTQSWLRRQLLCREAHAAPSGCRAQRGHHNESSNFAPADAAQVDFGAGPVLTVEGIAVRTWIFVMTLCWSRHQYAEIVLDQTVET
WLASHRRAFEWFGGCPDRVIIDNAKCAIIRACRYEPAVQRSYAALAEGYGFRIDACPPHDPQKKGVVESGVKYVKKSFVPLREFRDLADANRQLREWVMQ
QAGTRIHGTVHERPLTRFGVERPLLAALPDVPPVLSVWNEVAVHRDGHVVYKHALYSAPFTLVGKSLWLKATDTVIQLFHRHELVATHPRQRAGGRHTVR
DHQPPEAQAWLEHDPQWCLARAKEIGPSCHGVILALFNDKVLVNLRGAQGIIRLRQKVGDQRLEAACERALAFSSAKYSTIKGILDKGLDSEPVPRPASA
PTGAYQNGGRFGRDLQSLLIH
WLASHRRAFEWFGGCPDRVIIDNAKCAIIRACRYEPAVQRSYAALAEGYGFRIDACPPHDPQKKGVVESGVKYVKKSFVPLREFRDLADANRQLREWVMQ
QAGTRIHGTVHERPLTRFGVERPLLAALPDVPPVLSVWNEVAVHRDGHVVYKHALYSAPFTLVGKSLWLKATDTVIQLFHRHELVATHPRQRAGGRHTVR
DHQPPEAQAWLEHDPQWCLARAKEIGPSCHGVILALFNDKVLVNLRGAQGIIRLRQKVGDQRLEAACERALAFSSAKYSTIKGILDKGLDSEPVPRPASA
PTGAYQNGGRFGRDLQSLLIH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
789 bp | 262 aa | 1708 | 2496 | + | No |
AG : IS21 helper
ORF sequence :
MNPSPELNSILKQLRLSGILDSLEQRNRQAIDGQLAYTEFLAMLLHDEVARREHKKLGTRLLRAGFAMGKTLETFDFDRLPTLNRSHVHDLATGRYLDEK
VAILIAGPTGTGKSHLAQALGHCAARQGRDVLFISQTELLKRLNAARATGAYDRKFQQYARVPLLIVDDFALKPLRTPQDEDFHDLVAARYEHAATILTS
NLDFGEWGAAFPDNRILGTATLDRLRHGAYRLVLEGDSYRTPKPMPDPPQNAVAKNGKKPQP
VAILIAGPTGTGKSHLAQALGHCAARQGRDVLFISQTELLKRLNAARATGAYDRKFQQYARVPLLIVDDFALKPLRTPQDEDFHDLVAARYEHAATILTS
NLDFGEWGAAFPDNRILGTATLDRLRHGAYRLVLEGDSYRTPKPMPDPPQNAVAKNGKKPQP
Blast result :
Comments
ISBmu1 is 50%(ORF1) and 57% (ORF2) aa similar to ISMt2.
References
1] Yoshiyuki Ohtsubo, Hiroyuki Genka, Harunobu Komatsu, Yuji Nagata, and Masataka Tsuda,
Applied and Environmental Microbiology, in preparation.
High-Temperature-Induced Transposition of IS Elements in Burkholderia multivorans ATCC 17616
Applied and Environmental Microbiology, in preparation.
High-Temperature-Induced Transposition of IS Elements in Burkholderia multivorans ATCC 17616