ISRso16
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003295 | ND | Ralstonia solanacearum | Ralstonia solanacearum |
DNA section
IS Length : 1238 bp
Ends
IR Length : 39/48
IRL : TGACCCTACACCAGGAAACAGTACCGCAGAGAAGTAGAGAATCCGGCATG
IRR : TGACCCTACACCGGAATTAGTACCGTCCAGAAGTGGAGATTTCCGGCGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGACCCTACACCAGGAAACAGTACCGCAGAGAAGTAGAGAATCCGGCATGATTTTCACGAATTGAAAAGGAAGACATGCCATGAAGACGAGCAAGTTCAC
CGAGGCGCAGATAGCGTTCGCATTGAAGCAGGCGGAGCTAGGTACGAAGGTTGAGGAGGTGTGCCGCAAGCTGGGCATCAGCGAAGCGACGTTCTACAAC
TGGAAGAAGAAGTACGGGGGCGTCGGCCCTTCGGAGCTGCGCCGGATGCGGCAACTCGAGGAAGAGAACACGAAGCTCAAGCGGCTGGTGGCGGATCTGA
GCCTGGACAAGGCCATGCTGCAGGACGTGTTGTCAAAAAAGCTCTGAAGCCTTCCCGCAAGCGCACGCTGGTTGACGAATTGCGCGACCGCTACCGTGTG
AGCCTGACCAAGGCTTGCGCGTTGTTTCACATGTCGCGCTCGCTGTACGGGTATCGCTCGGTTGCTCGCGACTCGTCGGCACTGCTTGCGCGCATCAAAG
AGATTGCGGCCAGTCGCGTGCATTACGGCTATCGCCGTGTGCATGTGATGCTGCAGCGGGAAGGCTGGAGAGACAATCACAAACGCGTCTATCGCTTGTA
CCGGGCCGAAGGTCTGTCGCTGCGGCATAAGCGCCCCAAGCGCAACAAGTCGGCGCGGCTACGCCAGCCCAAGAGCATCGTCACGGCCATCAACGAAATC
TGGAGCATGGACTTTGTATCCGACGCGTTATTCGACGGCCGGCGCCTGCGCGCATTGACGGTCGTGGACAACTACACCAGGGAATGCCTGGCCATCGAAG
TCGGCCAAAGCCTGAAGGGGGAAGACGTCGTGCGAGTGCTCAATGCCGTTGTTGCCCAGCGTGGCTCACCCCAAACCATCAAGGTGGACAATGGCAGCGA
GTTTGTCTCGAAGGCGATGTACCGGTGGGCGTACGAGCACGGCGTGGAACTCGACTTCAGTCGGCCAGGCACGCCTCCTGACAATGCCAAGGTGGAAAGC
TTCAACGGGCGGTTCCGGCAGGAATGCCTGAACGAGCACTGGTTCTTGTCCCTGGAGGATGCTCGGGGCAAAATCGCCGACTGGCAGCGGTACTATAACG
AGAGTCGTCCCCACTCCGCGCTGCAGTGGGCGGCACCCGCCGAATTCGCCCATCAGGCAACGAAAAACGCCTCGACGGACGACTCAACGACGCCGGAAAT
CTCCACTTCTGGACGGTACTAATTCCGGTGTAGGGTCA
CGAGGCGCAGATAGCGTTCGCATTGAAGCAGGCGGAGCTAGGTACGAAGGTTGAGGAGGTGTGCCGCAAGCTGGGCATCAGCGAAGCGACGTTCTACAAC
TGGAAGAAGAAGTACGGGGGCGTCGGCCCTTCGGAGCTGCGCCGGATGCGGCAACTCGAGGAAGAGAACACGAAGCTCAAGCGGCTGGTGGCGGATCTGA
GCCTGGACAAGGCCATGCTGCAGGACGTGTTGTCAAAAAAGCTCTGAAGCCTTCCCGCAAGCGCACGCTGGTTGACGAATTGCGCGACCGCTACCGTGTG
AGCCTGACCAAGGCTTGCGCGTTGTTTCACATGTCGCGCTCGCTGTACGGGTATCGCTCGGTTGCTCGCGACTCGTCGGCACTGCTTGCGCGCATCAAAG
AGATTGCGGCCAGTCGCGTGCATTACGGCTATCGCCGTGTGCATGTGATGCTGCAGCGGGAAGGCTGGAGAGACAATCACAAACGCGTCTATCGCTTGTA
CCGGGCCGAAGGTCTGTCGCTGCGGCATAAGCGCCCCAAGCGCAACAAGTCGGCGCGGCTACGCCAGCCCAAGAGCATCGTCACGGCCATCAACGAAATC
TGGAGCATGGACTTTGTATCCGACGCGTTATTCGACGGCCGGCGCCTGCGCGCATTGACGGTCGTGGACAACTACACCAGGGAATGCCTGGCCATCGAAG
TCGGCCAAAGCCTGAAGGGGGAAGACGTCGTGCGAGTGCTCAATGCCGTTGTTGCCCAGCGTGGCTCACCCCAAACCATCAAGGTGGACAATGGCAGCGA
GTTTGTCTCGAAGGCGATGTACCGGTGGGCGTACGAGCACGGCGTGGAACTCGACTTCAGTCGGCCAGGCACGCCTCCTGACAATGCCAAGGTGGAAAGC
TTCAACGGGCGGTTCCGGCAGGAATGCCTGAACGAGCACTGGTTCTTGTCCCTGGAGGATGCTCGGGGCAAAATCGCCGACTGGCAGCGGTACTATAACG
AGAGTCGTCCCCACTCCGCGCTGCAGTGGGCGGCACCCGCCGAATTCGCCCATCAGGCAACGAAAAACGCCTCGACGGACGACTCAACGACGCCGGAAAT
CTCCACTTCTGGACGGTACTAATTCCGGTGTAGGGTCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
267 bp | 88 aa | 81 | 347 | + | No |
Description :
ORF sequence :
MKTSKFTEAQIAFALKQAELGTKVEEVCRKLGISEATFYNWKKKYGGVGPSELRRMRQLEEENTKLKRLVADLSLDKAMLQDVLSKKL
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
843 bp | 280 aa | 380 | 1222 | + | No |
Description :
ORF sequence :
MRDRYRVSLTKACALFHMSRSLYGYRSVARDSSALLARIKEIAASRVHYGYRRVHVMLQREGWRDNHKRVYRLYRAEGLSLRHKRPKRNKSARLRQPKSI
VTAINEIWSMDFVSDALFDGRRLRALTVVDNYTRECLAIEVGQSLKGEDVVRVLNAVVAQRGSPQTIKVDNGSEFVSKAMYRWAYEHGVELDFSRPGTPP
DNAKVESFNGRFRQECLNEHWFLSLEDARGKIADWQRYYNESRPHSALQWAAPAEFAHQATKNASTDDSTTPEISTSGRY
VTAINEIWSMDFVSDALFDGRRLRALTVVDNYTRECLAIEVGQSLKGEDVVRVLNAVVAQRGSPQTIKVDNGSEFVSKAMYRWAYEHGVELDFSRPGTPP
DNAKVESFNGRFRQECLNEHWFLSLEDARGKIADWQRYYNESRPHSALQWAAPAEFAHQATKNASTDDSTTPEISTSGRY
Blast result :
Comments
ISRso16 is 81% aa similar to ISD1 (ORF1) and 65% aa similar to IS407 (ORF2).
There are two complete copies in the Megaplasmide.
There are two complete copies in the Megaplasmide.
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502