ISRso16

  • Family IS3
  • Group IS407
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003295 ND Ralstonia solanacearum
Ralstonia solanacearum
DNA section
IS Length : 1238 bp

Ends


IR Length : 39/48

IRL : TGACCCTACACCAGGAAACAGTACCGCAGAGAAGTAGAGAATCCGGCATG
IRR : TGACCCTACACCGGAATTAGTACCGTCCAGAAGTGGAGATTTCCGGCGTC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TGACCCTACACCAGGAAACAGTACCGCAGAGAAGTAGAGAATCCGGCATGATTTTCACGAATTGAAAAGGAAGACATGCCATGAAGACGAGCAAGTTCAC
CGAGGCGCAGATAGCGTTCGCATTGAAGCAGGCGGAGCTAGGTACGAAGGTTGAGGAGGTGTGCCGCAAGCTGGGCATCAGCGAAGCGACGTTCTACAAC
TGGAAGAAGAAGTACGGGGGCGTCGGCCCTTCGGAGCTGCGCCGGATGCGGCAACTCGAGGAAGAGAACACGAAGCTCAAGCGGCTGGTGGCGGATCTGA
GCCTGGACAAGGCCATGCTGCAGGACGTGTTGTCAAAAAAGCTCTGAAGCCTTCCCGCAAGCGCACGCTGGTTGACGAATTGCGCGACCGCTACCGTGTG
AGCCTGACCAAGGCTTGCGCGTTGTTTCACATGTCGCGCTCGCTGTACGGGTATCGCTCGGTTGCTCGCGACTCGTCGGCACTGCTTGCGCGCATCAAAG
AGATTGCGGCCAGTCGCGTGCATTACGGCTATCGCCGTGTGCATGTGATGCTGCAGCGGGAAGGCTGGAGAGACAATCACAAACGCGTCTATCGCTTGTA
CCGGGCCGAAGGTCTGTCGCTGCGGCATAAGCGCCCCAAGCGCAACAAGTCGGCGCGGCTACGCCAGCCCAAGAGCATCGTCACGGCCATCAACGAAATC
TGGAGCATGGACTTTGTATCCGACGCGTTATTCGACGGCCGGCGCCTGCGCGCATTGACGGTCGTGGACAACTACACCAGGGAATGCCTGGCCATCGAAG
TCGGCCAAAGCCTGAAGGGGGAAGACGTCGTGCGAGTGCTCAATGCCGTTGTTGCCCAGCGTGGCTCACCCCAAACCATCAAGGTGGACAATGGCAGCGA
GTTTGTCTCGAAGGCGATGTACCGGTGGGCGTACGAGCACGGCGTGGAACTCGACTTCAGTCGGCCAGGCACGCCTCCTGACAATGCCAAGGTGGAAAGC
TTCAACGGGCGGTTCCGGCAGGAATGCCTGAACGAGCACTGGTTCTTGTCCCTGGAGGATGCTCGGGGCAAAATCGCCGACTGGCAGCGGTACTATAACG
AGAGTCGTCCCCACTCCGCGCTGCAGTGGGCGGCACCCGCCGAATTCGCCCATCAGGCAACGAAAAACGCCTCGACGGACGACTCAACGACGCCGGAAAT
CTCCACTTCTGGACGGTACTAATTCCGGTGTAGGGTCA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
267 bp88 aa81347+No
ORF function : Transposase
Description :

ORF sequence :

MKTSKFTEAQIAFALKQAELGTKVEEVCRKLGISEATFYNWKKKYGGVGPSELRRMRQLEEENTKLKRLVADLSLDKAMLQDVLSKKL

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
843 bp280 aa3801222+No
ORF function : Transposase
Description :

ORF sequence :

MRDRYRVSLTKACALFHMSRSLYGYRSVARDSSALLARIKEIAASRVHYGYRRVHVMLQREGWRDNHKRVYRLYRAEGLSLRHKRPKRNKSARLRQPKSI
VTAINEIWSMDFVSDALFDGRRLRALTVVDNYTRECLAIEVGQSLKGEDVVRVLNAVVAQRGSPQTIKVDNGSEFVSKAMYRWAYEHGVELDFSRPGTPP
DNAKVESFNGRFRQECLNEHWFLSLEDARGKIADWQRYYNESRPHSALQWAAPAEFAHQATKNASTDDSTTPEISTSGRY

 

Blast result :
Comments
ISRso16 is 81% aa similar to ISD1 (ORF1) and 65% aa similar to IS407 (ORF2).
There are two complete copies in the Megaplasmide.
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502