ISfinder Mirror Site

ISDra4

Family IS630
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
AE000513	ND	Deinococcus radiodurans	Deinococcus radiodurans Deinococcus radiodurans plasmid pMP1

DNA section

IS Length : 1048 bp

Ends

IR Length : 19/25

IRL : TATTGATAACGGTGTAGGTATGAATTGGTAAGCTGGCCGTATGCCCGGAT
IRR : TATTGATCGCGGCGTAGATTTGAGTCGATAAGTCGTTGAGGCAGTTCGAT

Insertion site

Left flank	Direct repeat	Right flank	DR Length

DNA sequence

TATTGATAACGGTGTAGGTATGAATTGGTAAGCTGGCCGTATGCCCGGATGGCAGCCGACCCAGTATTCCCGCGCTCAGCTTGAGGAGCGCCGCTTGGCC
GCGCTTGAATGGATTGAACGTGGGACGCATCGAAACCGGGAGATTGCTCAGCACTTCGGCGTGTCGGTACACACCGTGTACACCTGGAAAGCCCGCCTGA
AGCGTAACGGTGGCCTTCAGGCCACCGTTGCCCGTGGCGCTTCTGCACGTCTGAGCGCGACGCAACACGAGCAGCTTCGCACCCTCCCGCAGGAAGGTGC
CCTGCACCATGGCTTCCCTGATGACACCTGGACGACCCTACGCGTCACCAACCTGATTGGGCGGCACTTTGACGTGTGGTACCACCACGACCACGTGCGG
AAGATTCTCAGACGCTTGGGGTTTACGCCCCAGATGCCAGATGGCCGAGCGGCCGAGCGCAACGAACTTCGGATCGCATCCTGGAAAGAACAGGTTGCAC
CGGAGTTGGAAAAAAAAGGTCGCTGAGGGCGCAATCCTAGTGTATCTGGATGAGGTCGGCTTCTCGCTGAAAGGCGTGCGAAGGCGGACTTGGGGAACCA
GGGGCGTGACGCCCCTGGTCAAGCTTCCGGCGAATTGGGAGAAGCTCTCCACCATCGGGGCAATAACCTCGGACGGACGATTCTTCCAAAACACAAGATC
TGGAGCGATTCGGAGTACGGATGTCACTCAGTTCTTTCGACACCTCCTGCGGCACATCCAAGGGGAGCTTGTGGTAGTGCTGGACAACGCGGGCATTCAT
CGATCTAAAGCCACTCAGGCGTTCGTGGGTCTCCACGAACGCCTCTCACTGGTGTTTCTACCGCCGTACGCCCCGGAATTGAACCCGATTGAGCTGGTGT
GGGCATACGTGAAGCGGAATGCGTTGGGGAATTTCTGTGCGCGTTCGATCGTTGAACTCAAAGGGCGACTGGTCAGCGCGTGGCAGCGCCTTCGGTATAT
CGAACTGCCTCAACGACTTATCGACTCAAATCTACGCCGCGATCAATA

Recoding section

Recoding by frameshift
Frame
Type
Experimentally demonstrated

Stimulators :

Shine-Dalgarno sequence :
Secondary structure :

Recoding motif :

Protein section

ORF number : 3

ORF 1

Length		Begin	End	Strand	Fusion ORF
1 bp	0 aa	0	0	+	No

ORF function : Transposase
Description : First part of the transposase

ORF sequence :

Blast result :

ORF 2

Length		Begin	End	Strand	Fusion ORF
1 bp	0 aa	0	0	+	No

ORF function : Transposase
Description : Second part of the transposase

ORF sequence :

Blast result :

ORF 3

Length		Begin	End	Strand	Fusion ORF
1 bp	0 aa	0	0	+	Yes

ORF function : Transposase
Chemistry : DDE

ORF sequence :

Blast result :

Comments

There are 5 copies in the genome.

References

1] White,O., Eisen,J.A., Heidelberg,J.F., Hickey,E.K., Peterson,J.D., Dodson,R.J., Haft,D.H., Gwinn,M.L., Nelson,W.C., Richardson,D.L., Moffat,K.S., Qin,H., Jiang,L., Pamphile,W., Crosby,M., Shen,M., Vamathevan,J.J., Lam,P., McDonald,L., Utterback,T., Zalewski,C., Makarova,K.S., Aravind,L., Daly,M.J., Minton,K.W., Fleischmann,R.D., Ketchum,K.A., Nelson,K.E., Salzberg,S., Smith,H.O., Venter,J.C. and Fraser,C.M. (1999) GenBank Direct Submission